Wall clock time and date at job start Tue Mar 31 2020 04:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47214 * 2 1 4 4 N 1.46503 * 109.47150 * 120.00262 * 2 1 3 5 5 C 1.34777 * 119.99676 * 274.99688 * 4 2 1 6 6 O 1.21281 * 120.00263 * 0.02562 * 5 4 2 7 7 C 1.50700 * 119.99885 * 179.97438 * 5 4 2 8 8 H 1.08994 * 109.40119 * 60.17502 * 7 5 4 9 9 C 1.53072 * 109.39969 * 180.02562 * 7 5 4 10 10 C 1.53350 * 108.42470 * 169.02811 * 9 7 5 11 11 C 1.52920 * 108.67294 * 292.46955 * 10 9 7 12 12 N 1.45752 * 110.48947 * 50.75494 * 11 10 9 13 13 C 1.33353 * 124.10518 * 340.92200 * 12 11 10 14 14 O 1.21282 * 118.24698 * 182.22619 * 13 12 11 15 15 C 1.53002 * 109.46967 * 239.99568 * 2 1 3 16 16 C 1.53501 * 114.20124 * 65.00477 * 15 2 1 17 17 N 1.47074 * 87.98318 * 220.14501 * 16 15 2 18 18 C 1.36935 * 136.05671 * 207.08663 * 17 16 15 19 19 H 1.07995 * 119.99987 * 6.49427 * 18 17 16 20 20 C 1.38811 * 119.99581 * 186.50006 * 18 17 16 21 21 N 1.31614 * 120.00556 * 6.41294 * 20 18 17 22 22 Si 1.86800 * 119.99706 * 186.41763 * 20 18 17 23 23 H 1.48501 * 109.47400 * 84.98677 * 22 20 18 24 24 H 1.48504 * 109.47045 * 204.98899 * 22 20 18 25 25 H 1.48504 * 109.47349 * 324.98598 * 22 20 18 26 26 C 1.47073 * 87.88168 * 27.34207 * 17 16 15 27 27 H 1.09005 * 109.46685 * 300.00149 * 1 2 3 28 28 H 1.09003 * 109.46847 * 59.99604 * 1 2 3 29 29 H 1.08994 * 109.47214 * 180.02562 * 1 2 3 30 30 H 0.96998 * 120.00172 * 94.99573 * 4 2 1 31 31 H 1.08999 * 109.67667 * 288.75824 * 9 7 5 32 32 H 1.08999 * 109.67345 * 49.29564 * 9 7 5 33 33 H 1.09008 * 109.59859 * 52.22478 * 10 9 7 34 34 H 1.08995 * 109.60376 * 172.54891 * 10 9 7 35 35 H 1.09002 * 109.29739 * 171.06262 * 11 10 9 36 36 H 1.08993 * 109.30046 * 290.64336 * 11 10 9 37 37 H 0.97002 * 117.94726 * 160.92525 * 12 11 10 38 38 H 1.09000 * 113.28078 * 198.06720 * 15 2 1 39 39 H 1.09001 * 113.46856 * 105.37188 * 16 15 2 40 40 H 1.08994 * 113.46903 * 334.92146 * 16 15 2 41 41 H 0.97005 * 120.00690 * 179.97438 * 21 20 18 42 42 H 1.09001 * 113.46425 * 87.43869 * 26 17 16 43 43 H 1.09003 * 113.46427 * 217.87257 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 2.1471 -0.0183 2.3571 6 8 1.8583 1.1584 2.4117 7 6 2.6489 -0.7288 3.5877 8 1 3.6492 -1.1182 3.3984 9 6 2.6993 0.2560 4.7585 10 6 2.9428 -0.5366 6.0484 11 6 1.7091 -1.3928 6.3373 12 7 1.3340 -2.1615 5.1572 13 6 1.7268 -1.8675 3.9172 14 8 1.3175 -2.5564 3.0068 15 6 2.0400 -0.7214 -1.2492 16 6 1.6920 -0.0177 -2.5683 17 7 1.4190 -1.3436 -3.1433 18 6 1.4515 -1.9020 -4.3932 19 1 1.8370 -1.3353 -5.2279 20 6 0.9890 -3.1963 -4.5874 21 7 0.4040 -3.8411 -3.6004 22 14 1.1969 -4.0228 -6.2496 23 1 2.5435 -4.6440 -6.3286 24 1 0.1579 -5.0709 -6.4147 25 1 1.0547 -3.0108 -7.3270 26 6 1.0895 -1.8041 -1.7860 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 2.2490 -1.6318 1.1526 31 1 3.5116 0.9666 4.6056 32 1 1.7520 0.7905 4.8294 33 1 3.8136 -1.1803 5.9232 34 1 3.1138 0.1532 6.8748 35 1 1.9289 -2.0762 7.1575 36 1 0.8795 -0.7452 6.6205 37 1 0.7627 -2.9355 5.2815 38 1 3.0811 -1.0347 -1.1709 39 1 2.5412 0.4881 -3.0277 40 1 0.8083 0.6168 -2.5018 41 1 0.0805 -4.7455 -3.7362 42 1 0.0469 -1.6404 -1.5133 43 1 1.4254 -2.8202 -1.5789 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969884023.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:18:44 Heat of formation + Delta-G solvation = -17.429155 kcal Electronic energy + Delta-G solvation = -24429.350924 eV Core-core repulsion = 20897.275879 eV Total energy + Delta-G solvation = -3532.075046 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.04689 -39.30271 -38.17740 -36.78051 -34.60707 -33.35280 -32.16111 -30.66430 -29.61331 -27.23819 -25.52721 -24.63978 -24.11977 -23.05322 -21.72921 -20.43862 -19.41842 -18.50148 -17.63660 -17.12538 -16.65256 -16.58863 -15.93735 -15.34134 -14.83424 -14.73244 -14.47170 -14.37972 -13.98850 -13.74901 -13.62623 -13.57363 -12.73402 -12.35154 -12.20744 -11.91004 -11.78618 -11.68153 -11.58886 -11.36525 -11.29657 -10.93730 -10.78666 -10.51929 -10.35272 -10.06903 -9.94486 -9.66635 -9.62980 -9.38597 -9.12022 -8.69234 -8.68130 -6.78693 -5.72190 -3.02728 2.25641 2.63218 3.09072 3.38387 3.43061 3.47151 3.49316 4.19794 4.31195 4.37481 4.42316 4.50695 4.88063 4.94275 4.97298 5.19700 5.25755 5.33587 5.35662 5.44745 5.45149 5.62604 5.68230 5.80443 5.89343 5.90615 6.15830 6.23517 6.33879 6.45914 6.48987 6.63430 6.75780 6.81804 6.90592 6.96424 7.27665 7.46142 7.60272 7.78068 7.94058 8.03098 8.40230 9.09443 9.75808 10.72186 11.46347 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.028435 B = 0.003315 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.481128 B = 8445.618792 C = 9054.300322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.156 3.844 3 H 0.082 0.918 4 N -0.699 5.699 5 C 0.527 3.473 6 O -0.545 6.545 7 C -0.128 4.128 8 H 0.129 0.871 9 C -0.104 4.104 10 C -0.138 4.138 11 C 0.108 3.892 12 N -0.718 5.718 13 C 0.526 3.474 14 O -0.533 6.533 15 C -0.157 4.157 16 C 0.127 3.873 17 N -0.610 5.610 18 C -0.219 4.219 19 H 0.080 0.920 20 C -0.008 4.008 21 N -0.918 5.918 22 Si 0.912 3.088 23 H -0.288 1.288 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.163 3.837 27 H 0.047 0.953 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.410 0.590 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.067 0.933 37 H 0.403 0.597 38 H 0.091 0.909 39 H 0.039 0.961 40 H 0.035 0.965 41 H 0.254 0.746 42 H 0.042 0.958 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.321 6.122 23.188 24.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.051 3.949 3 H 0.100 0.900 4 N -0.350 5.350 5 C 0.311 3.689 6 O -0.423 6.423 7 C -0.152 4.152 8 H 0.147 0.853 9 C -0.142 4.142 10 C -0.176 4.176 11 C -0.016 4.016 12 N -0.371 5.371 13 C 0.311 3.689 14 O -0.409 6.409 15 C -0.177 4.177 16 C 0.000 4.000 17 N -0.336 5.336 18 C -0.346 4.346 19 H 0.098 0.902 20 C -0.205 4.205 21 N -0.564 5.564 22 Si 0.742 3.258 23 H -0.215 1.215 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.037 3.963 27 H 0.066 0.934 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.247 0.753 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.108 0.892 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.239 0.761 38 H 0.109 0.891 39 H 0.057 0.943 40 H 0.053 0.947 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 4.980 6.518 22.402 23.857 hybrid contribution -0.123 -1.298 -0.714 1.487 sum 4.857 5.220 21.688 22.830 Atomic orbital electron populations 1.22262 0.95314 1.02899 1.01403 1.20901 0.94233 0.96550 0.83176 0.90012 1.46197 1.64942 1.14709 1.09101 1.19719 0.78204 0.86923 0.84066 1.90686 1.50939 1.15806 1.84913 1.21493 1.01321 0.95956 0.96476 0.85344 1.21506 1.04796 0.96794 0.91136 1.21930 0.97635 0.99199 0.98848 1.21436 0.97755 0.95223 0.87233 1.45366 1.52825 1.32468 1.06450 1.19619 0.81315 0.85184 0.82766 1.90841 1.55493 1.50591 1.43957 1.23680 1.00922 1.00821 0.92276 1.22377 0.97266 0.90285 0.90065 1.45619 1.79014 1.05447 1.03485 1.18921 1.35112 0.96515 0.84072 0.90194 1.24823 1.00167 0.97639 0.97843 1.69852 1.43227 1.12385 1.30982 0.86146 0.77319 0.79174 0.83143 1.21510 1.21689 1.20737 1.22268 0.94873 0.95832 0.83280 0.93371 0.91426 0.91225 0.75329 0.89771 0.89876 0.90758 0.89237 0.90340 0.91426 0.76110 0.89084 0.94278 0.94738 0.93652 0.94027 0.92480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 8.22 37.16 0.31 -2.50 16 2 C 0.16 2.65 2.76 -67.93 -0.19 2.46 16 3 H 0.08 1.39 7.58 -51.93 -0.39 1.00 16 4 N -0.70 -10.89 4.56 -53.80 -0.25 -11.14 16 5 C 0.53 7.70 7.03 -10.99 -0.08 7.62 16 6 O -0.55 -9.33 15.46 5.56 0.09 -9.24 16 7 C -0.13 -1.35 2.78 -93.14 -0.26 -1.61 16 8 H 0.13 1.08 8.14 -51.93 -0.42 0.66 16 9 C -0.10 -0.84 4.78 -26.51 -0.13 -0.97 16 10 C -0.14 -0.66 6.02 -26.59 -0.16 -0.82 16 11 C 0.11 0.53 7.17 -4.49 -0.03 0.49 16 12 N -0.72 -5.84 5.45 -61.39 -0.33 -6.17 16 13 C 0.53 6.12 7.28 -11.87 -0.09 6.03 16 14 O -0.53 -8.37 15.53 5.56 0.09 -8.28 16 15 C -0.16 -3.03 4.14 -89.97 -0.37 -3.40 16 16 C 0.13 2.70 8.10 -8.50 -0.07 2.63 16 17 N -0.61 -16.21 3.76 -184.57 -0.69 -16.90 16 18 C -0.22 -6.33 10.73 -15.06 -0.16 -6.49 16 19 H 0.08 2.22 7.84 -52.49 -0.41 1.81 16 20 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 21 N -0.92 -28.09 11.81 55.49 0.66 -27.44 16 22 Si 0.91 22.65 29.56 -169.99 -5.02 17.63 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 26 C 0.16 3.93 6.36 -8.37 -0.05 3.88 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.07 1.17 6.77 -51.93 -0.35 0.82 16 29 H 0.07 1.31 6.33 -51.93 -0.33 0.98 16 30 H 0.41 6.41 7.23 -40.82 -0.30 6.11 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.80 7.73 -51.93 -0.40 0.40 16 33 H 0.07 0.33 8.12 -51.92 -0.42 -0.09 16 34 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.40 2.97 8.80 -40.82 -0.36 2.61 16 38 H 0.09 1.73 8.14 -51.93 -0.42 1.30 16 39 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.04 0.72 6.75 -51.93 -0.35 0.36 16 41 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 42 H 0.04 1.03 5.45 -51.93 -0.28 0.75 16 43 H 0.06 1.53 7.57 -51.93 -0.39 1.13 16 LS Contribution 341.94 15.07 5.15 5.15 Total: -1.00 -35.60 341.94 -8.20 -43.80 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -6.51 Total: 5.58 kcal Atomic # 6 Polarization: 8.38 SS G_CDS: -1.38 Total: 7.00 kcal Atomic # 7 Polarization: -61.03 SS G_CDS: -0.62 Total: -61.65 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: 0.17 Total: -17.52 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.60 -8.20 -43.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969884023.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.376 kcal (2) G-P(sol) polarization free energy of solvation -35.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds