Wall clock time and date at job start Tue Mar 31 2020 04:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47436 * 2 1 4 4 N 1.46496 * 109.47401 * 239.99593 * 2 1 3 5 5 C 1.34783 * 119.99982 * 85.00332 * 4 2 1 6 6 O 1.21278 * 119.99667 * 359.97438 * 5 4 2 7 7 C 1.50702 * 120.00284 * 180.02562 * 5 4 2 8 8 H 1.09004 * 109.29893 * 319.58386 * 7 5 4 9 9 C 1.52915 * 109.30109 * 78.96293 * 7 5 4 10 10 C 1.53341 * 108.67637 * 171.06559 * 9 7 5 11 11 C 1.53064 * 108.42590 * 292.46894 * 10 9 7 12 12 C 1.50180 * 109.89250 * 48.89880 * 11 10 9 13 13 O 1.21280 * 118.24953 * 162.43790 * 12 11 10 14 14 N 1.33355 * 123.50363 * 342.41967 * 12 11 10 15 15 C 1.53000 * 109.47063 * 120.00030 * 2 1 3 16 16 C 1.53504 * 114.20511 * 300.00008 * 15 2 1 17 17 N 1.47069 * 87.98363 * 220.34296 * 16 15 2 18 18 C 1.36941 * 136.05552 * 207.07801 * 17 16 15 19 19 H 1.08000 * 119.99396 * 7.56018 * 18 17 16 20 20 C 1.38806 * 119.99993 * 187.55101 * 18 17 16 21 21 N 1.31621 * 119.99759 * 174.37714 * 20 18 17 22 22 Si 1.86799 * 119.99972 * 354.38427 * 20 18 17 23 23 H 1.48501 * 109.46963 * 174.94900 * 22 20 18 24 24 H 1.48498 * 109.47184 * 294.94894 * 22 20 18 25 25 H 1.48507 * 109.47082 * 54.95224 * 22 20 18 26 26 C 1.47064 * 87.88742 * 27.34488 * 17 16 15 27 27 H 1.08997 * 109.47436 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47233 * 300.00358 * 1 2 3 29 29 H 1.09007 * 109.46363 * 60.00142 * 1 2 3 30 30 H 0.97000 * 120.00462 * 265.00413 * 4 2 1 31 31 H 1.09001 * 109.60468 * 290.82481 * 9 7 5 32 32 H 1.09000 * 109.60549 * 51.30485 * 9 7 5 33 33 H 1.09003 * 109.67625 * 172.73218 * 10 9 7 34 34 H 1.09005 * 109.69970 * 52.22055 * 10 9 7 35 35 H 1.08997 * 109.40194 * 288.77077 * 11 10 9 36 36 H 1.09003 * 109.40131 * 169.02578 * 11 10 9 37 37 H 0.97002 * 117.94314 * 182.24121 * 14 12 11 38 38 H 1.08994 * 113.28563 * 73.06520 * 15 2 1 39 39 H 1.08997 * 113.46758 * 105.55870 * 16 15 2 40 40 H 1.09005 * 113.46650 * 335.12291 * 16 15 2 41 41 H 0.96993 * 120.00423 * 354.88754 * 21 20 18 42 42 H 1.08993 * 113.47012 * 87.43421 * 26 17 16 43 43 H 1.09000 * 113.46758 * 217.87997 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1472 -0.0183 -2.3571 6 8 1.8583 1.1583 -2.4117 7 6 2.6490 -0.7289 -3.5877 8 1 3.4597 -1.4023 -3.3094 9 6 1.5094 -1.5431 -4.2013 10 6 1.9656 -2.0765 -5.5646 11 6 2.1291 -0.8903 -6.5181 12 6 2.9414 0.1871 -5.8588 13 8 3.4380 1.0423 -6.5608 14 7 3.1455 0.2539 -4.5427 15 6 2.0400 -0.7213 1.2492 16 6 1.5897 -0.0846 2.5715 17 7 2.9389 -0.3446 3.0960 18 6 3.4924 -0.5603 4.3298 19 1 2.8556 -0.6816 5.1935 20 6 4.8720 -0.6231 4.4702 21 7 5.4078 -0.7193 5.6685 22 14 5.9679 -0.5708 2.9584 23 1 7.3912 -0.5294 3.3801 24 1 5.7312 -1.7825 2.1332 25 1 5.6528 0.6412 2.1602 26 6 3.4329 -0.2642 1.7131 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3632 0.5139 -0.8901 30 1 2.2490 -1.6318 -1.1525 31 1 1.2625 -2.3783 -3.5458 32 1 0.6342 -0.9067 -4.3318 33 1 1.2172 -2.7639 -5.9590 34 1 2.9186 -2.5944 -5.4564 35 1 1.1465 -0.4958 -6.7770 36 1 2.6352 -1.2217 -7.4249 37 1 3.6562 1.0037 -4.1993 38 1 1.9086 -1.8024 1.2063 39 1 0.8094 -0.6492 3.0816 40 1 1.3548 0.9763 2.4845 41 1 4.8447 -0.6718 6.4568 42 1 3.6837 0.7492 1.4000 43 1 4.2228 -0.9820 1.4920 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969917753.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:18:34 Heat of formation + Delta-G solvation = -20.649856 kcal Electronic energy + Delta-G solvation = -24170.217792 eV Core-core repulsion = 20638.003086 eV Total energy + Delta-G solvation = -3532.214706 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.05898 -39.74480 -38.65180 -36.59165 -35.20794 -33.36933 -32.53653 -31.33545 -29.77268 -27.82389 -25.94152 -25.28529 -23.84685 -23.22818 -21.46069 -20.67652 -19.56630 -19.52976 -17.93198 -17.52111 -17.29152 -16.70687 -16.06622 -15.51766 -15.38497 -15.10842 -14.52035 -14.34733 -14.16688 -14.06320 -13.82372 -13.76227 -13.21771 -13.02703 -12.47980 -12.39843 -12.02087 -11.97907 -11.89843 -11.59223 -11.57386 -11.50672 -11.01398 -10.74623 -10.43441 -10.42158 -10.28179 -9.93586 -9.40573 -9.32626 -9.18168 -9.04027 -8.95384 -7.21950 -6.33965 -3.28457 2.28559 2.31718 2.74432 3.14602 3.34090 3.40492 3.60488 4.11077 4.15041 4.19101 4.30632 4.54121 4.55117 4.64172 4.74271 4.81104 4.94352 5.00796 5.19692 5.22455 5.33751 5.34836 5.36475 5.41388 5.47833 5.62911 5.65343 5.76822 5.92042 6.05119 6.15550 6.19215 6.21321 6.31245 6.44207 6.44966 6.83070 6.99458 7.06549 7.30646 7.90530 7.99791 8.19171 8.92910 9.45133 10.31222 11.15928 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.022682 B = 0.003504 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.147021 B = 7989.256232 C = 8628.101790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.151 3.849 3 H 0.090 0.910 4 N -0.714 5.714 5 C 0.501 3.499 6 O -0.529 6.529 7 C 0.124 3.876 8 H 0.101 0.899 9 C -0.128 4.128 10 C -0.122 4.122 11 C -0.137 4.137 12 C 0.523 3.477 13 O -0.556 6.556 14 N -0.700 5.700 15 C -0.140 4.140 16 C 0.134 3.866 17 N -0.629 5.629 18 C -0.305 4.305 19 H 0.083 0.917 20 C -0.025 4.025 21 N -0.934 5.934 22 Si 1.071 2.929 23 H -0.295 1.295 24 H -0.294 1.294 25 H -0.287 1.287 26 C 0.103 3.897 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.055 0.945 30 H 0.402 0.598 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.406 0.594 38 H 0.099 0.901 39 H 0.047 0.953 40 H 0.039 0.961 41 H 0.261 0.739 42 H 0.045 0.955 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.414 -6.009 -22.135 25.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.046 3.954 3 H 0.109 0.891 4 N -0.365 5.365 5 C 0.285 3.715 6 O -0.404 6.404 7 C 0.014 3.986 8 H 0.118 0.882 9 C -0.166 4.166 10 C -0.160 4.160 11 C -0.177 4.177 12 C 0.311 3.689 13 O -0.434 6.434 14 N -0.352 5.352 15 C -0.160 4.160 16 C 0.007 3.993 17 N -0.356 5.356 18 C -0.431 4.431 19 H 0.101 0.899 20 C -0.224 4.224 21 N -0.576 5.576 22 Si 0.904 3.096 23 H -0.222 1.222 24 H -0.222 1.222 25 H -0.214 1.214 26 C -0.023 4.023 27 H 0.075 0.925 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.236 0.764 31 H 0.112 0.888 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.243 0.757 38 H 0.117 0.883 39 H 0.065 0.935 40 H 0.057 0.943 41 H 0.071 0.929 42 H 0.062 0.938 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.804 -5.030 -22.841 24.991 hybrid contribution -1.354 -0.005 0.945 1.651 sum -10.158 -5.035 -21.897 24.658 Atomic orbital electron populations 1.22114 0.95040 1.02037 1.02431 1.21070 0.94022 0.97515 0.82756 0.89147 1.46097 1.66749 1.14197 1.09479 1.20703 0.78495 0.87667 0.84617 1.90755 1.49268 1.15697 1.84718 1.20920 0.98491 0.90832 0.88333 0.88153 1.21870 0.97041 0.99993 0.97670 1.21669 1.03003 0.97304 0.93978 1.21687 1.01666 0.94490 0.99850 1.20154 0.80403 0.86688 0.81689 1.90779 1.50430 1.41034 1.61127 1.45236 1.55669 1.28279 1.06059 1.23573 0.99087 1.00285 0.93018 1.22259 0.90115 0.97157 0.89773 1.45974 1.04053 1.83689 1.01927 1.20163 0.92157 1.47747 0.83071 0.89917 1.25728 0.94245 0.99234 1.03168 1.70911 1.37336 1.52090 0.97219 0.83701 0.75799 0.76077 0.74048 1.22181 1.22190 1.21449 1.22836 0.94695 0.98493 0.86269 0.92455 0.91159 0.92583 0.76411 0.88806 0.90083 0.89785 0.90560 0.88038 0.87902 0.75699 0.88312 0.93462 0.94325 0.92887 0.93785 0.93043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 9.29 37.16 0.35 -1.36 16 2 C 0.15 1.87 2.47 -67.93 -0.17 1.70 16 3 H 0.09 1.34 7.32 -51.93 -0.38 0.96 16 4 N -0.71 -6.98 5.08 -53.81 -0.27 -7.25 16 5 C 0.50 5.38 6.95 -10.98 -0.08 5.30 16 6 O -0.53 -7.94 16.04 5.56 0.09 -7.86 16 7 C 0.12 0.94 3.46 -69.53 -0.24 0.69 16 8 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 9 C -0.13 -0.65 5.29 -26.60 -0.14 -0.79 16 10 C -0.12 -0.51 6.03 -26.52 -0.16 -0.67 16 11 C -0.14 -0.89 6.03 -28.10 -0.17 -1.06 16 12 C 0.52 5.69 7.71 -11.87 -0.09 5.60 16 13 O -0.56 -8.53 17.78 5.56 0.10 -8.43 16 14 N -0.70 -7.04 4.79 -55.99 -0.27 -7.31 16 15 C -0.14 -2.09 3.67 -89.96 -0.33 -2.42 16 16 C 0.13 2.45 7.33 -8.50 -0.06 2.38 16 17 N -0.63 -15.00 3.69 -184.57 -0.68 -15.68 16 18 C -0.31 -8.70 11.08 -15.06 -0.17 -8.87 16 19 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 20 C -0.02 -0.74 5.50 -17.43 -0.10 -0.83 16 21 N -0.93 -29.35 13.70 55.49 0.76 -28.59 16 22 Si 1.07 26.50 25.16 -169.99 -4.28 22.22 16 23 H -0.29 -7.45 7.11 56.52 0.40 -7.04 16 24 H -0.29 -6.71 6.51 56.52 0.37 -6.35 16 25 H -0.29 -6.73 6.21 56.52 0.35 -6.38 16 26 C 0.10 2.05 5.27 -8.36 -0.04 2.00 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.76 7.48 -51.93 -0.39 0.37 16 29 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 30 H 0.40 2.81 8.60 -40.82 -0.35 2.46 16 31 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.08 0.51 8.10 -51.93 -0.42 0.09 16 33 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.08 0.28 8.13 -51.93 -0.42 -0.14 16 35 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.41 4.63 8.44 -40.82 -0.34 4.29 16 38 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.04 0.69 8.10 -51.93 -0.42 0.27 16 41 H 0.26 8.10 8.73 -40.82 -0.36 7.74 16 42 H 0.04 0.90 7.44 -51.93 -0.39 0.52 16 43 H 0.05 1.06 4.73 -51.93 -0.25 0.81 16 LS Contribution 344.57 15.07 5.19 5.19 Total: -1.00 -37.00 344.57 -7.58 -44.59 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -6.82 Total: 1.42 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: -1.40 Total: 1.69 kcal Atomic # 7 Polarization: -58.37 SS G_CDS: -0.46 Total: -58.83 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: 0.19 Total: -16.28 kcal Atomic # 14 Polarization: 26.50 SS G_CDS: -4.28 Total: 22.22 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -37.00 -7.58 -44.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969917753.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.936 kcal (2) G-P(sol) polarization free energy of solvation -37.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds