Wall clock time and date at job start Tue Mar 31 2020 04:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47436 * 2 1 4 4 N 1.46496 * 109.47401 * 239.99593 * 2 1 3 5 5 C 1.34783 * 119.99982 * 85.00332 * 4 2 1 6 6 O 1.21278 * 119.99667 * 359.97438 * 5 4 2 7 7 C 1.50702 * 120.00284 * 180.02562 * 5 4 2 8 8 H 1.09004 * 109.29893 * 319.58386 * 7 5 4 9 9 C 1.52915 * 109.30109 * 78.96293 * 7 5 4 10 10 C 1.53341 * 108.67637 * 171.06559 * 9 7 5 11 11 C 1.53064 * 108.42590 * 292.46894 * 10 9 7 12 12 C 1.50180 * 109.89250 * 48.89880 * 11 10 9 13 13 O 1.21280 * 118.24953 * 162.43790 * 12 11 10 14 14 N 1.33355 * 123.50363 * 342.41967 * 12 11 10 15 15 C 1.53000 * 109.47063 * 120.00030 * 2 1 3 16 16 C 1.53504 * 114.20511 * 300.00008 * 15 2 1 17 17 N 1.47069 * 87.98363 * 220.34296 * 16 15 2 18 18 C 1.36941 * 136.05552 * 207.07801 * 17 16 15 19 19 H 1.08000 * 119.99396 * 7.56018 * 18 17 16 20 20 C 1.38806 * 119.99993 * 187.55101 * 18 17 16 21 21 N 1.31621 * 119.99759 * 174.37714 * 20 18 17 22 22 Si 1.86799 * 119.99972 * 354.38427 * 20 18 17 23 23 H 1.48501 * 109.46963 * 174.94900 * 22 20 18 24 24 H 1.48498 * 109.47184 * 294.94894 * 22 20 18 25 25 H 1.48507 * 109.47082 * 54.95224 * 22 20 18 26 26 C 1.47064 * 87.88742 * 27.34488 * 17 16 15 27 27 H 1.08997 * 109.47436 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47233 * 300.00358 * 1 2 3 29 29 H 1.09007 * 109.46363 * 60.00142 * 1 2 3 30 30 H 0.97000 * 120.00462 * 265.00413 * 4 2 1 31 31 H 1.09001 * 109.60468 * 290.82481 * 9 7 5 32 32 H 1.09000 * 109.60549 * 51.30485 * 9 7 5 33 33 H 1.09003 * 109.67625 * 172.73218 * 10 9 7 34 34 H 1.09005 * 109.69970 * 52.22055 * 10 9 7 35 35 H 1.08997 * 109.40194 * 288.77077 * 11 10 9 36 36 H 1.09003 * 109.40131 * 169.02578 * 11 10 9 37 37 H 0.97002 * 117.94314 * 182.24121 * 14 12 11 38 38 H 1.08994 * 113.28563 * 73.06520 * 15 2 1 39 39 H 1.08997 * 113.46758 * 105.55870 * 16 15 2 40 40 H 1.09005 * 113.46650 * 335.12291 * 16 15 2 41 41 H 0.96993 * 120.00423 * 354.88754 * 21 20 18 42 42 H 1.08993 * 113.47012 * 87.43421 * 26 17 16 43 43 H 1.09000 * 113.46758 * 217.87997 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1472 -0.0183 -2.3571 6 8 1.8583 1.1583 -2.4117 7 6 2.6490 -0.7289 -3.5877 8 1 3.4597 -1.4023 -3.3094 9 6 1.5094 -1.5431 -4.2013 10 6 1.9656 -2.0765 -5.5646 11 6 2.1291 -0.8903 -6.5181 12 6 2.9414 0.1871 -5.8588 13 8 3.4380 1.0423 -6.5608 14 7 3.1455 0.2539 -4.5427 15 6 2.0400 -0.7213 1.2492 16 6 1.5897 -0.0846 2.5715 17 7 2.9389 -0.3446 3.0960 18 6 3.4924 -0.5603 4.3298 19 1 2.8556 -0.6816 5.1935 20 6 4.8720 -0.6231 4.4702 21 7 5.4078 -0.7193 5.6685 22 14 5.9679 -0.5708 2.9584 23 1 7.3912 -0.5294 3.3801 24 1 5.7312 -1.7825 2.1332 25 1 5.6528 0.6412 2.1602 26 6 3.4329 -0.2642 1.7131 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3632 0.5139 -0.8901 30 1 2.2490 -1.6318 -1.1525 31 1 1.2625 -2.3783 -3.5458 32 1 0.6342 -0.9067 -4.3318 33 1 1.2172 -2.7639 -5.9590 34 1 2.9186 -2.5944 -5.4564 35 1 1.1465 -0.4958 -6.7770 36 1 2.6352 -1.2217 -7.4249 37 1 3.6562 1.0037 -4.1993 38 1 1.9086 -1.8024 1.2063 39 1 0.8094 -0.6492 3.0816 40 1 1.3548 0.9763 2.4845 41 1 4.8447 -0.6718 6.4568 42 1 3.6837 0.7492 1.4000 43 1 4.2228 -0.9820 1.4920 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969917753.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:18:33 Heat of formation + Delta-G solvation = -51.040293 kcal Electronic energy + Delta-G solvation = -24171.535620 eV Core-core repulsion = 20638.003086 eV Total energy + Delta-G solvation = -3533.532534 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.83945 -40.83315 -39.91285 -37.36161 -36.32276 -34.54870 -33.93207 -32.41260 -30.56791 -29.46477 -27.12434 -26.28684 -25.24685 -23.76757 -22.88871 -21.60224 -21.01818 -20.08418 -19.55840 -18.79878 -18.07735 -17.60356 -17.20348 -16.80903 -16.30527 -16.04610 -15.79298 -15.46522 -15.14271 -15.13033 -14.76935 -14.69174 -14.52763 -14.15536 -13.65761 -13.29619 -13.23108 -13.12376 -12.99411 -12.63262 -12.46829 -12.35029 -12.11466 -11.98290 -11.84867 -11.70396 -11.34708 -11.23749 -11.09992 -10.84900 -10.73423 -10.18668 -10.05741 -9.23961 -8.62841 -5.49241 1.35302 1.47087 1.48108 1.51951 1.65892 1.97234 2.39166 2.53024 2.98047 3.17626 3.39895 3.57561 3.64184 3.70774 3.87326 3.90475 4.09904 4.21977 4.28847 4.39758 4.47289 4.55850 4.59108 4.66770 4.70086 4.81475 4.82149 4.86909 4.88465 4.99344 5.05519 5.10982 5.19755 5.31464 5.32271 5.41694 5.55902 5.62847 5.94191 6.25462 6.54540 6.68826 7.10743 7.22074 7.31575 8.26450 8.88730 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.022682 B = 0.003504 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.147021 B = 7989.256232 C = 8628.101790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.160 3.840 3 H 0.064 0.936 4 N -0.701 5.701 5 C 0.502 3.498 6 O -0.577 6.577 7 C 0.125 3.875 8 H 0.133 0.867 9 C -0.125 4.125 10 C -0.113 4.113 11 C -0.134 4.134 12 C 0.516 3.484 13 O -0.613 6.613 14 N -0.703 5.703 15 C -0.099 4.099 16 C 0.128 3.872 17 N -0.663 5.663 18 C -0.291 4.291 19 H 0.051 0.949 20 C -0.087 4.087 21 N -0.972 5.972 22 Si 1.109 2.891 23 H -0.307 1.307 24 H -0.259 1.259 25 H -0.271 1.271 26 C 0.092 3.908 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.050 0.950 30 H 0.420 0.580 31 H 0.126 0.874 32 H 0.068 0.932 33 H 0.110 0.890 34 H 0.087 0.913 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.394 0.606 38 H 0.125 0.875 39 H 0.057 0.943 40 H 0.045 0.955 41 H 0.246 0.754 42 H 0.039 0.961 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.764 -8.517 -24.839 28.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.054 3.946 3 H 0.082 0.918 4 N -0.354 5.354 5 C 0.288 3.712 6 O -0.456 6.456 7 C 0.017 3.983 8 H 0.150 0.850 9 C -0.163 4.163 10 C -0.150 4.150 11 C -0.173 4.173 12 C 0.305 3.695 13 O -0.495 6.495 14 N -0.352 5.352 15 C -0.118 4.118 16 C 0.002 3.998 17 N -0.392 5.392 18 C -0.419 4.419 19 H 0.069 0.931 20 C -0.279 4.279 21 N -0.618 5.618 22 Si 0.935 3.065 23 H -0.236 1.236 24 H -0.185 1.185 25 H -0.197 1.197 26 C -0.033 4.033 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.258 0.742 31 H 0.144 0.856 32 H 0.087 0.913 33 H 0.129 0.871 34 H 0.106 0.894 35 H 0.127 0.873 36 H 0.129 0.871 37 H 0.229 0.771 38 H 0.143 0.857 39 H 0.075 0.925 40 H 0.063 0.937 41 H 0.055 0.945 42 H 0.057 0.943 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.226 -7.605 -25.561 28.562 hybrid contribution -1.056 0.842 1.853 2.293 sum -11.282 -6.762 -23.709 27.113 Atomic orbital electron populations 1.22044 0.93311 1.03467 1.02097 1.20757 0.95176 0.95981 0.82645 0.91769 1.45894 1.66204 1.14954 1.08335 1.21249 0.77420 0.87080 0.85456 1.90748 1.51378 1.18019 1.85494 1.21213 1.00460 0.90214 0.86408 0.84970 1.21969 0.95301 1.00267 0.98761 1.21686 1.04456 0.96327 0.92546 1.21758 1.01032 0.94083 1.00442 1.21023 0.79886 0.86973 0.81605 1.90744 1.52903 1.43469 1.62416 1.45424 1.54989 1.28371 1.06465 1.23253 0.94653 1.01516 0.92411 1.22500 0.88007 0.97999 0.91299 1.46130 1.07067 1.84108 1.01847 1.20049 0.91963 1.45369 0.84502 0.93115 1.27078 0.96294 0.99675 1.04829 1.71013 1.37452 1.55589 0.97721 0.83265 0.73311 0.78151 0.71737 1.23559 1.18461 1.19706 1.23041 0.97589 0.98459 0.84202 0.90091 0.91423 0.93104 0.74219 0.85609 0.91311 0.87137 0.89445 0.87303 0.87091 0.77090 0.85732 0.92469 0.93732 0.94481 0.94317 0.92893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 9.29 71.98 0.67 -2.07 16 2 C 0.16 3.46 2.47 44.99 0.11 3.57 16 3 H 0.06 1.79 7.32 -2.39 -0.02 1.78 16 4 N -0.70 -10.90 5.08 -442.54 -2.25 -13.15 16 5 C 0.50 9.41 6.95 87.66 0.61 10.02 16 6 O -0.58 -16.79 16.04 -3.02 -0.05 -16.84 16 7 C 0.13 1.47 3.46 44.36 0.15 1.62 16 8 H 0.13 0.79 8.14 -2.38 -0.02 0.77 16 9 C -0.13 -0.71 5.29 30.68 0.16 -0.55 16 10 C -0.11 -0.42 6.03 30.73 0.19 -0.23 16 11 C -0.13 -1.40 6.03 29.71 0.18 -1.22 16 12 C 0.52 10.79 7.71 87.71 0.68 11.46 16 13 O -0.61 -19.26 17.78 -3.03 -0.05 -19.31 16 14 N -0.70 -13.26 4.79 -450.24 -2.16 -15.42 16 15 C -0.10 -2.59 3.67 -10.37 -0.04 -2.63 16 16 C 0.13 4.39 7.33 83.18 0.61 5.00 16 17 N -0.66 -30.85 3.69 -737.86 -2.72 -33.57 16 18 C -0.29 -16.81 11.08 84.03 0.93 -15.88 16 19 H 0.05 3.16 8.06 -2.91 -0.02 3.14 16 20 C -0.09 -5.21 5.50 84.86 0.47 -4.74 16 21 N -0.97 -63.09 13.70 21.65 0.30 -62.80 16 22 Si 1.11 52.89 25.16 68.60 1.73 54.62 16 23 H -0.31 -15.19 7.11 99.48 0.71 -14.49 16 24 H -0.26 -10.75 6.51 99.48 0.65 -10.10 16 25 H -0.27 -12.03 6.21 99.48 0.62 -11.41 16 26 C 0.09 3.42 5.27 83.27 0.44 3.86 16 27 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.07 1.27 7.48 -2.39 -0.02 1.25 16 29 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 30 H 0.42 3.55 8.60 -92.71 -0.80 2.75 16 31 H 0.13 -0.02 8.14 -2.39 -0.02 -0.04 16 32 H 0.07 0.62 8.10 -2.39 -0.02 0.60 16 33 H 0.11 -0.06 8.14 -2.39 -0.02 -0.08 16 34 H 0.09 0.20 8.13 -2.38 -0.02 0.18 16 35 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.39 9.00 8.44 -92.71 -0.78 8.22 16 38 H 0.12 2.73 8.14 -2.39 -0.02 2.71 16 39 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.04 1.51 8.10 -2.38 -0.02 1.49 16 41 H 0.25 16.03 8.73 -92.71 -0.81 15.22 16 42 H 0.04 1.51 7.44 -2.39 -0.02 1.49 16 43 H 0.05 1.97 4.73 -2.39 -0.01 1.96 16 Total: -1.00 -86.16 344.57 -0.79 -86.95 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -0.74 Total: 11.31 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: 5.15 Total: 8.21 kcal Atomic # 7 Polarization: -118.11 SS G_CDS: -6.83 Total: -124.94 kcal Atomic # 8 Polarization: -36.05 SS G_CDS: -0.10 Total: -36.15 kcal Atomic # 14 Polarization: 52.89 SS G_CDS: 1.73 Total: 54.62 kcal Total: -86.16 -0.79 -86.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969917753.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.908 kcal (2) G-P(sol) polarization free energy of solvation -86.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds