Wall clock time and date at job start Tue Mar 31 2020 04:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 5 5 C 1.34775 * 119.99693 * 275.00198 * 4 2 1 6 6 O 1.21274 * 120.00425 * 359.97438 * 5 4 2 7 7 C 1.50706 * 119.99541 * 179.97438 * 5 4 2 8 8 H 1.08995 * 109.60369 * 59.99855 * 7 5 4 9 9 C 1.53345 * 109.59903 * 180.32385 * 7 5 4 10 10 C 1.53077 * 108.42016 * 187.28632 * 9 7 5 11 11 C 1.50170 * 109.89356 * 311.09610 * 10 9 7 12 12 O 1.21277 * 118.24859 * 197.56157 * 11 10 9 13 13 N 1.33360 * 123.50556 * 17.58625 * 11 10 9 14 14 C 1.45815 * 124.17049 * 357.95489 * 13 11 10 15 15 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 16 16 C 1.53945 * 113.74529 * 158.73809 * 15 2 1 17 17 N 1.47807 * 86.04084 * 222.08774 * 16 15 2 18 18 C 1.36936 * 134.45937 * 204.64279 * 17 16 15 19 19 H 1.08005 * 120.00346 * 179.86277 * 18 17 16 20 20 C 1.38811 * 119.99896 * 359.87268 * 18 17 16 21 21 N 1.31623 * 120.00001 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00199 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47031 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47325 * 119.99616 * 22 20 18 25 25 H 1.48504 * 109.47317 * 239.99651 * 22 20 18 26 26 C 1.47576 * 91.04962 * 24.54882 * 17 16 15 27 27 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 28 28 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 29 29 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 30 30 H 0.97000 * 120.00117 * 94.99845 * 4 2 1 31 31 H 1.08996 * 109.67341 * 307.01502 * 9 7 5 32 32 H 1.08995 * 109.67837 * 67.51666 * 9 7 5 33 33 H 1.09000 * 109.39972 * 71.22921 * 10 9 7 34 34 H 1.09002 * 109.39444 * 191.05494 * 10 9 7 35 35 H 0.97003 * 117.94200 * 177.78023 * 13 11 10 36 36 H 1.09001 * 109.17845 * 258.54259 * 14 13 11 37 37 H 1.08999 * 109.46055 * 139.14005 * 14 13 11 38 38 H 1.09002 * 112.94852 * 290.34047 * 15 2 1 39 39 H 1.08997 * 113.76654 * 336.35575 * 16 15 2 40 40 H 1.09002 * 113.76615 * 107.75050 * 16 15 2 41 41 H 0.96992 * 119.99763 * 180.02562 * 21 20 18 42 42 H 1.09006 * 113.77253 * 221.14869 * 26 17 16 43 43 H 1.09007 * 113.77043 * 89.75159 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.8590 1.1586 2.4115 7 6 2.6489 -0.7288 3.5878 8 1 3.6480 -1.1223 3.4009 9 6 2.6941 0.2520 4.7656 10 6 3.3754 -0.4424 5.9475 11 6 2.7668 -1.7982 6.1635 12 8 2.9491 -2.3458 7.2301 13 7 2.0370 -2.4324 5.2450 14 6 1.7024 -1.8776 3.9387 15 6 2.0400 -0.7213 -1.2492 16 6 3.4848 -0.3521 -1.6317 17 7 2.9978 -0.3178 -3.0268 18 6 3.5875 -0.4758 -4.2526 19 1 2.9927 -0.4039 -5.1513 20 6 4.9495 -0.7285 -4.3402 21 7 5.6744 -0.8158 -3.2450 22 14 5.7538 -0.9448 -6.0122 23 1 4.7284 -0.8020 -7.0769 24 1 6.8040 0.0893 -6.1939 25 1 6.3682 -2.2942 -6.0952 26 6 1.6214 -0.0473 -2.5684 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 2.2491 -1.6318 1.1527 31 1 3.2624 1.1383 4.4835 32 1 1.6799 0.5394 5.0431 33 1 4.4395 -0.5523 5.7385 34 1 3.2432 0.1598 6.8464 35 1 1.7098 -3.3203 5.4581 36 1 0.6777 -1.5066 3.9591 37 1 1.7852 -2.6569 3.1811 38 1 1.8528 -1.7949 -1.2263 39 1 3.8047 0.6190 -1.2540 40 1 4.2071 -1.1448 -1.4367 41 1 6.6263 -0.9920 -3.3063 42 1 0.8586 -0.5970 -3.1200 43 1 1.3928 1.0136 -2.4664 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970018866.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:19:18 Heat of formation + Delta-G solvation = -31.134681 kcal Electronic energy + Delta-G solvation = -23989.389605 eV Core-core repulsion = 20456.720243 eV Total energy + Delta-G solvation = -3532.669362 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.88074 -39.66618 -38.20873 -36.45096 -34.93435 -33.28089 -32.30970 -31.12404 -29.53223 -27.57146 -25.16905 -24.90744 -24.17621 -23.39515 -21.51073 -20.52558 -19.66266 -18.95758 -17.82722 -16.84921 -16.79881 -16.39833 -16.05396 -15.66756 -15.05957 -14.92554 -14.46340 -14.24770 -13.97998 -13.88266 -13.67952 -13.52735 -13.01291 -12.55378 -12.26906 -12.16028 -12.00150 -11.72358 -11.58955 -11.38337 -11.34653 -11.31297 -10.95253 -10.76499 -10.40767 -10.05493 -10.01818 -9.81082 -9.75055 -9.46201 -9.44657 -8.90830 -8.83903 -6.91392 -5.80626 -3.12748 2.35300 2.53848 2.92226 3.16010 3.36022 3.41556 3.43989 4.18701 4.27045 4.33616 4.41499 4.43892 4.89139 4.92585 4.98059 5.06779 5.12254 5.21213 5.22984 5.32880 5.48190 5.49112 5.59140 5.70078 5.73197 5.86184 5.87871 5.96361 6.17906 6.29341 6.34416 6.41658 6.52297 6.59957 6.72690 6.95916 7.18479 7.31213 7.51412 7.53929 7.89592 7.94450 8.21501 9.01161 9.67422 10.56079 11.36530 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.022965 B = 0.003082 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.933166 B = 9082.790500 C = 9719.610347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.149 3.851 3 H 0.088 0.912 4 N -0.715 5.715 5 C 0.522 3.478 6 O -0.536 6.536 7 C -0.128 4.128 8 H 0.110 0.890 9 C -0.103 4.103 10 C -0.136 4.136 11 C 0.520 3.480 12 O -0.560 6.560 13 N -0.718 5.718 14 C 0.120 3.880 15 C -0.147 4.147 16 C 0.170 3.830 17 N -0.613 5.613 18 C -0.222 4.222 19 H 0.080 0.920 20 C -0.009 4.009 21 N -0.921 5.921 22 Si 0.911 3.089 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.290 1.290 26 C 0.130 3.870 27 H 0.067 0.933 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.399 0.601 31 H 0.090 0.910 32 H 0.077 0.923 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.401 0.599 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.026 0.974 40 H 0.071 0.929 41 H 0.253 0.747 42 H 0.044 0.956 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.204 -2.095 14.892 17.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.045 3.955 3 H 0.106 0.894 4 N -0.365 5.365 5 C 0.307 3.693 6 O -0.412 6.412 7 C -0.150 4.150 8 H 0.128 0.872 9 C -0.141 4.141 10 C -0.176 4.176 11 C 0.308 3.692 12 O -0.439 6.439 13 N -0.371 5.371 14 C -0.004 4.004 15 C -0.167 4.167 16 C 0.045 3.955 17 N -0.339 5.339 18 C -0.350 4.350 19 H 0.098 0.902 20 C -0.205 4.205 21 N -0.569 5.569 22 Si 0.742 3.258 23 H -0.205 1.205 24 H -0.217 1.217 25 H -0.217 1.217 26 C 0.003 3.997 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.234 0.766 31 H 0.109 0.891 32 H 0.096 0.904 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.237 0.763 36 H 0.091 0.909 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.044 0.956 40 H 0.089 0.911 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -8.970 -1.342 15.167 17.671 hybrid contribution 0.559 -0.835 -1.080 1.475 sum -8.410 -2.177 14.087 16.550 Atomic orbital electron populations 1.22127 0.95619 1.01733 1.02148 1.21122 0.93476 0.97631 0.83295 0.89402 1.46148 1.66591 1.14079 1.09716 1.20115 0.77780 0.87277 0.84140 1.90714 1.49751 1.15765 1.84990 1.21683 1.01636 0.96826 0.94838 0.87228 1.21490 1.02719 0.98044 0.91879 1.21706 1.01799 0.93018 1.01092 1.20281 0.77711 0.88102 0.83145 1.90766 1.60368 1.67478 1.25242 1.45431 1.54378 1.21074 1.16182 1.21315 0.98542 0.95887 0.84700 1.23825 1.00935 0.99626 0.92290 1.22295 0.91339 0.98489 0.83361 1.46005 1.03301 1.82592 1.02027 1.19075 0.91459 1.41484 0.82989 0.90219 1.24781 0.96046 1.02376 0.97296 1.69821 1.06028 1.55296 1.25722 0.86058 0.79315 0.77396 0.83057 1.20463 1.21735 1.21703 1.22493 0.89673 0.96622 0.90875 0.91391 0.92797 0.92726 0.76645 0.89126 0.90422 0.87822 0.87676 0.76283 0.90863 0.89649 0.89409 0.95644 0.91057 0.93724 0.93761 0.94764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 9.31 37.16 0.35 -1.50 16 2 C 0.15 2.04 2.38 -67.93 -0.16 1.88 16 3 H 0.09 1.43 7.41 -51.93 -0.39 1.05 16 4 N -0.72 -7.91 4.99 -53.80 -0.27 -8.17 16 5 C 0.52 5.98 7.10 -10.98 -0.08 5.91 16 6 O -0.54 -8.20 15.56 5.56 0.09 -8.11 16 7 C -0.13 -1.03 2.59 -91.63 -0.24 -1.27 16 8 H 0.11 0.80 8.12 -51.93 -0.42 0.38 16 9 C -0.10 -0.85 4.72 -26.51 -0.13 -0.98 16 10 C -0.14 -1.07 6.03 -28.10 -0.17 -1.24 16 11 C 0.52 5.25 7.71 -11.87 -0.09 5.16 16 12 O -0.56 -7.96 17.78 5.56 0.10 -7.86 16 13 N -0.72 -5.42 5.45 -61.35 -0.33 -5.75 16 14 C 0.12 0.75 6.34 -4.45 -0.03 0.73 16 15 C -0.15 -2.41 3.47 -89.69 -0.31 -2.72 16 16 C 0.17 3.78 7.08 -2.84 -0.02 3.76 16 17 N -0.61 -15.24 3.70 -177.68 -0.66 -15.90 16 18 C -0.22 -6.14 10.70 -15.06 -0.16 -6.30 16 19 H 0.08 2.13 7.83 -52.48 -0.41 1.72 16 20 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 21 N -0.92 -26.82 11.39 55.49 0.63 -26.19 16 22 Si 0.91 21.85 29.55 -169.99 -5.02 16.82 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 C 0.13 2.48 7.64 -2.97 -0.02 2.46 16 27 H 0.07 0.79 7.52 -51.93 -0.39 0.40 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.40 3.51 8.24 -40.82 -0.34 3.17 16 31 H 0.09 0.82 7.90 -51.93 -0.41 0.41 16 32 H 0.08 0.67 8.13 -51.93 -0.42 0.25 16 33 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.40 2.63 8.80 -40.82 -0.36 2.27 16 36 H 0.07 0.46 8.11 -51.93 -0.42 0.04 16 37 H 0.09 0.37 7.85 -51.93 -0.41 -0.03 16 38 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.03 0.60 7.99 -51.93 -0.41 0.19 16 40 H 0.07 1.75 7.17 -51.93 -0.37 1.37 16 41 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 42 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.03 0.64 8.10 -51.93 -0.42 0.22 16 LS Contribution 350.64 15.07 5.28 5.28 Total: -1.00 -34.90 350.64 -8.18 -43.09 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -6.84 Total: 1.27 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: -1.16 Total: 5.53 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: -0.63 Total: -56.01 kcal Atomic # 8 Polarization: -16.16 SS G_CDS: 0.19 Total: -15.98 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.90 -8.18 -43.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970018866.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.951 kcal (2) G-P(sol) polarization free energy of solvation -34.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds