Wall clock time and date at job start Tue Mar 31 2020 04:19:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47061 * 2 1 4 4 N 1.46505 * 109.46983 * 240.00103 * 2 1 3 5 5 C 1.34772 * 119.99761 * 84.99937 * 4 2 1 6 6 O 1.21279 * 120.00573 * 359.97438 * 5 4 2 7 7 C 1.50708 * 119.99450 * 180.02562 * 5 4 2 8 8 H 1.08995 * 110.43279 * 298.91140 * 7 5 4 9 9 C 1.54634 * 110.59456 * 176.29476 * 7 5 4 10 10 C 1.54481 * 101.76141 * 216.46693 * 9 7 5 11 11 N 1.46765 * 105.53232 * 25.20849 * 10 9 7 12 12 C 1.46499 * 124.34435 * 163.21142 * 11 10 9 13 13 C 1.34414 * 111.30437 * 343.36467 * 11 10 9 14 14 O 1.21281 * 124.94076 * 180.27356 * 13 11 10 15 15 C 1.52996 * 109.47107 * 120.00075 * 2 1 3 16 16 C 1.53947 * 113.74444 * 281.67881 * 15 2 1 17 17 N 1.47572 * 86.11914 * 222.05138 * 16 15 2 18 18 C 1.36945 * 134.48984 * 204.64262 * 17 16 15 19 19 H 1.08009 * 119.99863 * 179.97438 * 18 17 16 20 20 C 1.38805 * 120.00142 * 359.97438 * 18 17 16 21 21 N 1.31617 * 120.00113 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99907 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47393 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46948 * 120.00051 * 22 20 18 25 25 H 1.48495 * 109.47168 * 239.99571 * 22 20 18 26 26 C 1.47579 * 91.01780 * 24.63642 * 17 16 15 27 27 H 1.09004 * 109.47090 * 300.09402 * 1 2 3 28 28 H 1.08996 * 109.47273 * 60.09710 * 1 2 3 29 29 H 1.09000 * 109.46888 * 180.09539 * 1 2 3 30 30 H 0.96999 * 119.99130 * 265.00095 * 4 2 1 31 31 H 1.09001 * 110.96600 * 334.58560 * 9 7 5 32 32 H 1.08999 * 110.96698 * 98.35028 * 9 7 5 33 33 H 1.08996 * 110.24291 * 144.41410 * 10 9 7 34 34 H 1.08997 * 110.24555 * 266.32806 * 10 9 7 35 35 H 1.08997 * 109.47133 * 180.19273 * 12 11 10 36 36 H 1.08994 * 109.47363 * 300.19968 * 12 11 10 37 37 H 1.09004 * 109.47179 * 60.19964 * 12 11 10 38 38 H 1.08999 * 112.94944 * 53.41525 * 15 2 1 39 39 H 1.09003 * 113.76513 * 336.35314 * 16 15 2 40 40 H 1.08994 * 113.76994 * 107.74197 * 16 15 2 41 41 H 0.97005 * 120.00223 * 179.97438 * 21 20 18 42 42 H 1.08994 * 113.77045 * 221.05742 * 26 17 16 43 43 H 1.09005 * 113.86890 * 89.67490 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3571 6 8 1.8581 1.1584 -2.4117 7 6 2.6488 -0.7289 -3.5878 8 1 3.6558 -1.1115 -3.4222 9 6 2.6236 0.2174 -4.8105 10 6 2.2207 -0.7478 -5.9474 11 7 1.4890 -1.8400 -5.2948 12 6 0.6245 -2.7914 -5.9975 13 6 1.7112 -1.8531 -3.9693 14 8 1.2337 -2.6531 -3.1928 15 6 2.0400 -0.7212 1.2492 16 6 1.9777 0.1341 2.5277 17 7 3.3098 -0.4178 2.8416 18 6 4.0195 -0.6144 3.9962 19 1 5.0066 -1.0508 3.9557 20 6 3.4701 -0.2528 5.2186 21 7 2.2674 0.2795 5.2679 22 14 4.4384 -0.5202 6.7935 23 1 5.7541 -1.1274 6.4686 24 1 4.6496 0.7836 7.4722 25 1 3.6816 -1.4288 7.6916 26 6 3.5701 -0.6730 1.4115 27 1 -0.3633 0.5153 0.8892 28 1 -0.3633 0.5123 -0.8908 29 1 -0.3633 -1.0277 0.0017 30 1 2.2490 -1.6318 -1.1526 31 1 1.8775 1.0015 -4.6817 32 1 3.6094 0.6451 -4.9931 33 1 1.5796 -0.2374 -6.6660 34 1 3.1092 -1.1366 -6.4448 35 1 0.2012 -3.4954 -5.2811 36 1 -0.1807 -2.2514 -6.4956 37 1 1.2100 -3.3353 -6.7388 38 1 1.6177 -1.7193 1.3659 39 1 1.9803 1.2076 2.3386 40 1 1.1989 -0.1743 3.2250 41 1 1.8833 0.5318 6.1222 42 1 4.0628 -1.6258 1.2178 43 1 4.0408 0.1623 0.8929 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970292220.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:19:31 Heat of formation + Delta-G solvation = -13.543584 kcal Electronic energy + Delta-G solvation = -24219.159566 eV Core-core repulsion = 20687.253011 eV Total energy + Delta-G solvation = -3531.906555 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.13917 -39.28189 -37.94222 -36.71970 -34.72056 -33.18164 -32.09537 -30.50091 -28.13087 -27.41810 -27.09130 -24.77085 -24.03814 -22.81905 -21.21515 -20.54776 -19.82767 -18.95641 -17.50126 -17.16516 -16.72499 -16.44973 -15.92712 -15.34263 -14.79018 -14.70810 -14.19167 -14.03916 -13.94725 -13.55875 -13.47812 -13.14183 -13.03734 -12.80400 -12.56293 -12.32814 -12.08160 -11.89420 -11.49747 -11.41372 -11.35218 -11.16860 -10.85718 -10.63042 -10.28249 -10.21275 -9.98849 -9.76348 -9.60627 -9.35868 -9.11178 -8.77808 -8.72964 -6.82495 -5.72596 -3.04534 2.13051 2.49814 2.83159 3.31755 3.41676 3.46626 3.49411 3.93017 4.09891 4.49051 4.55053 4.59756 4.88178 4.90389 4.95346 5.12752 5.13783 5.20389 5.29300 5.35943 5.47179 5.50900 5.61087 5.73702 5.76607 5.91624 6.08186 6.10490 6.16918 6.33684 6.43300 6.54052 6.66081 6.66439 6.69135 6.88366 7.28030 7.42740 7.61463 7.69962 7.79916 8.03033 8.33117 9.09268 9.75214 10.65200 11.44713 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.033962 B = 0.003006 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.264931 B = 9311.535961 C = 9340.894259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.150 3.850 3 H 0.087 0.913 4 N -0.703 5.703 5 C 0.530 3.470 6 O -0.540 6.540 7 C -0.151 4.151 8 H 0.136 0.864 9 C -0.116 4.116 10 C 0.101 3.899 11 N -0.623 5.623 12 C 0.094 3.906 13 C 0.527 3.473 14 O -0.515 6.515 15 C -0.147 4.147 16 C 0.176 3.824 17 N -0.612 5.612 18 C -0.222 4.222 19 H 0.080 0.920 20 C -0.009 4.009 21 N -0.921 5.921 22 Si 0.911 3.089 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.290 1.290 26 C 0.125 3.875 27 H 0.070 0.930 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.405 0.595 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.089 0.911 39 H 0.028 0.972 40 H 0.075 0.925 41 H 0.253 0.747 42 H 0.040 0.960 43 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.727 -3.506 -25.575 25.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.046 3.954 3 H 0.105 0.895 4 N -0.353 5.353 5 C 0.313 3.687 6 O -0.418 6.418 7 C -0.176 4.176 8 H 0.153 0.847 9 C -0.154 4.154 10 C -0.022 4.022 11 N -0.358 5.358 12 C -0.048 4.048 13 C 0.313 3.687 14 O -0.390 6.390 15 C -0.167 4.167 16 C 0.050 3.950 17 N -0.338 5.338 18 C -0.349 4.349 19 H 0.097 0.903 20 C -0.206 4.206 21 N -0.568 5.568 22 Si 0.742 3.258 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.217 1.217 26 C -0.001 4.001 27 H 0.089 0.911 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.240 0.760 31 H 0.120 0.880 32 H 0.116 0.884 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.108 0.892 39 H 0.045 0.955 40 H 0.093 0.907 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -2.183 -3.155 -24.859 25.153 hybrid contribution 0.729 -0.510 0.763 1.172 sum -1.454 -3.665 -24.095 24.416 Atomic orbital electron populations 1.22089 0.95445 1.01937 1.02001 1.21141 0.93903 0.97279 0.83084 0.89457 1.46111 1.65474 1.14370 1.09331 1.19636 0.78097 0.86958 0.83969 1.90695 1.50683 1.15680 1.84711 1.22201 1.02075 0.97029 0.96282 0.84691 1.22589 1.04983 0.97226 0.90567 1.22179 0.96551 0.87373 0.96077 1.48072 1.47773 1.32039 1.07894 1.21586 0.93468 0.92342 0.97416 1.20371 0.81095 0.84853 0.82337 1.90768 1.52686 1.41656 1.53913 1.23855 0.97528 1.00840 0.94470 1.22186 0.89627 0.93814 0.89361 1.45939 1.16454 1.71761 0.99662 1.19074 0.98441 1.34577 0.82832 0.90269 1.24782 0.97091 1.01214 0.97479 1.69823 1.15392 1.47398 1.24219 0.86052 0.78928 0.77314 0.83504 1.20516 1.21779 1.21720 1.22540 0.93182 0.97627 0.86779 0.91137 0.93052 0.92620 0.75975 0.88050 0.88443 0.89943 0.90733 0.89734 0.91934 0.91915 0.89247 0.95457 0.90710 0.93710 0.94129 0.95037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 9.44 37.16 0.35 -2.10 16 2 C 0.15 2.50 2.29 -67.93 -0.16 2.35 16 3 H 0.09 1.61 7.48 -51.93 -0.39 1.22 16 4 N -0.70 -10.31 4.64 -53.80 -0.25 -10.56 16 5 C 0.53 7.50 7.13 -10.98 -0.08 7.43 16 6 O -0.54 -9.20 15.20 5.56 0.08 -9.11 16 7 C -0.15 -1.53 3.32 -91.78 -0.30 -1.84 16 8 H 0.14 1.07 8.14 -51.93 -0.42 0.65 16 9 C -0.12 -0.86 6.45 -25.10 -0.16 -1.03 16 10 C 0.10 0.57 7.35 -3.12 -0.02 0.55 16 11 N -0.62 -5.29 3.33 -180.30 -0.60 -5.89 16 12 C 0.09 0.60 11.14 59.85 0.67 1.27 16 13 C 0.53 6.04 7.44 -10.86 -0.08 5.96 16 14 O -0.52 -7.60 16.17 5.56 0.09 -7.51 16 15 C -0.15 -2.79 3.36 -89.69 -0.30 -3.10 16 16 C 0.18 4.21 6.98 -2.98 -0.02 4.19 16 17 N -0.61 -16.13 3.70 -177.92 -0.66 -16.79 16 18 C -0.22 -6.38 10.70 -15.06 -0.16 -6.54 16 19 H 0.08 2.20 7.83 -52.48 -0.41 1.79 16 20 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 21 N -0.92 -27.79 11.38 55.49 0.63 -27.16 16 22 Si 0.91 22.55 29.55 -169.99 -5.02 17.52 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 26 C 0.12 2.61 8.37 -2.98 -0.02 2.59 16 27 H 0.07 1.10 8.09 -51.93 -0.42 0.68 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.41 5.60 7.81 -40.82 -0.32 5.28 16 31 H 0.10 0.95 7.07 -51.93 -0.37 0.58 16 32 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 35 H 0.08 0.67 7.53 -51.93 -0.39 0.28 16 36 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 38 H 0.09 1.69 8.14 -51.93 -0.42 1.26 16 39 H 0.03 0.67 8.03 -51.93 -0.42 0.26 16 40 H 0.07 1.96 7.16 -51.93 -0.37 1.59 16 41 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.03 0.66 8.10 -51.93 -0.42 0.24 16 LS Contribution 353.60 15.07 5.33 5.33 Total: -1.00 -35.35 353.60 -7.66 -43.01 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -6.87 Total: 1.78 kcal Atomic # 6 Polarization: 9.76 SS G_CDS: -0.39 Total: 9.37 kcal Atomic # 7 Polarization: -59.51 SS G_CDS: -0.88 Total: -60.39 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: 0.17 Total: -16.62 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.35 -7.66 -43.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970292220.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.462 kcal (2) G-P(sol) polarization free energy of solvation -35.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds