Wall clock time and date at job start Tue Mar 31 2020 04:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46769 * 2 1 4 4 N 1.46494 * 109.47118 * 120.00496 * 2 1 3 5 5 C 1.34784 * 119.99635 * 274.99773 * 4 2 1 6 6 O 1.21279 * 119.99925 * 359.97438 * 5 4 2 7 7 C 1.50700 * 119.99961 * 180.02562 * 5 4 2 8 8 H 1.09004 * 110.21469 * 320.47339 * 7 5 4 9 9 C 1.54474 * 110.24544 * 82.49419 * 7 5 4 10 10 C 1.54629 * 101.76433 * 144.41771 * 9 7 5 11 11 C 1.51288 * 104.19366 * 335.20383 * 10 9 7 12 12 O 1.21278 * 124.94034 * 196.27032 * 11 10 9 13 13 N 1.34416 * 110.11243 * 16.25125 * 11 10 9 14 14 C 1.46505 * 124.34590 * 180.38580 * 13 11 10 15 15 C 1.53004 * 109.46705 * 240.00068 * 2 1 3 16 16 C 1.53943 * 113.73899 * 156.67555 * 15 2 1 17 17 N 1.47575 * 86.11787 * 222.04893 * 16 15 2 18 18 C 1.36936 * 134.49142 * 204.64490 * 17 16 15 19 19 H 1.08001 * 119.99980 * 179.97438 * 18 17 16 20 20 C 1.38810 * 120.00360 * 359.97438 * 18 17 16 21 21 N 1.31623 * 119.99750 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00444 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47007 * 59.99799 * 22 20 18 24 24 H 1.48496 * 109.47341 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.47029 * 299.99860 * 22 20 18 26 26 C 1.47581 * 91.01614 * 24.63914 * 17 16 15 27 27 H 1.08996 * 109.47503 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47041 * 300.00119 * 1 2 3 29 29 H 1.09005 * 109.46855 * 59.99655 * 1 2 3 30 30 H 0.96995 * 120.00292 * 95.27206 * 4 2 1 31 31 H 1.08998 * 110.97303 * 262.53366 * 9 7 5 32 32 H 1.09001 * 110.97155 * 26.30266 * 9 7 5 33 33 H 1.08996 * 110.48927 * 216.52783 * 10 9 7 34 34 H 1.09002 * 110.60176 * 93.93207 * 10 9 7 35 35 H 1.09002 * 109.47289 * 270.02713 * 14 13 11 36 36 H 1.09002 * 109.46877 * 30.02334 * 14 13 11 37 37 H 1.08999 * 109.47365 * 150.02406 * 14 13 11 38 38 H 1.08995 * 112.94586 * 288.40981 * 15 2 1 39 39 H 1.09001 * 113.76953 * 336.34792 * 16 15 2 40 40 H 1.08999 * 113.77108 * 107.74303 * 16 15 2 41 41 H 0.97005 * 120.00024 * 179.97438 * 21 20 18 42 42 H 1.08997 * 113.76701 * 221.05743 * 26 17 16 43 43 H 1.09000 * 113.86974 * 89.67497 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8591 1.1585 2.4114 7 6 2.6500 -0.7286 3.5874 8 1 2.2293 -1.7328 3.6410 9 6 4.1933 -0.7936 3.5738 10 6 4.5286 -0.6377 5.0753 11 6 3.3355 0.0955 5.6477 12 8 3.3158 0.6580 6.7219 13 7 2.3007 0.0332 4.7921 14 6 0.9920 0.6467 5.0317 15 6 2.0400 -0.7213 -1.2493 16 6 3.4665 -0.3146 -1.6608 17 7 2.9583 -0.3119 -3.0463 18 6 3.5327 -0.4677 -4.2795 19 1 2.9222 -0.4226 -5.1692 20 6 4.8998 -0.6836 -4.3862 21 7 5.6440 -0.7381 -3.3019 22 14 5.6836 -0.8955 -6.0685 23 1 5.4487 0.3249 -6.8812 24 1 7.1441 -1.1121 -5.9105 25 1 5.0808 -2.0684 -6.7512 26 6 1.5822 -0.0739 -2.5689 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 2.2528 -1.6308 1.1515 31 1 4.5400 -1.7548 3.1945 32 1 4.6133 0.0277 2.9931 33 1 5.4364 -0.0484 5.2043 34 1 4.6385 -1.6142 5.5471 35 1 0.3453 -0.0654 5.5443 36 1 1.1153 1.5359 5.6500 37 1 0.5417 0.9260 4.0792 38 1 1.8827 -1.7992 -1.2116 39 1 3.7640 0.6700 -1.3001 40 1 4.2151 -1.0833 -1.4689 41 1 6.5993 -0.8894 -3.3764 42 1 0.8264 -0.6505 -3.1022 43 1 1.3243 0.9809 -2.4745 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970314942.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:19:04 Heat of formation + Delta-G solvation = -11.021314 kcal Electronic energy + Delta-G solvation = -24262.464263 eV Core-core repulsion = 20730.667082 eV Total energy + Delta-G solvation = -3531.797181 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.07290 -39.43412 -38.13219 -36.33120 -34.92170 -33.02026 -32.24872 -30.76770 -28.22018 -27.56971 -26.78529 -24.92120 -24.08495 -22.90780 -21.49073 -20.53306 -19.76209 -19.04644 -17.62247 -17.06520 -16.75532 -16.23408 -15.92774 -15.27750 -14.97637 -14.84838 -14.16228 -14.07335 -13.90182 -13.70657 -13.54961 -13.20471 -12.80938 -12.73540 -12.50136 -12.34650 -12.07341 -12.00910 -11.72354 -11.43148 -11.35855 -11.33745 -10.94361 -10.77493 -10.43748 -10.15620 -10.01270 -9.84088 -9.82242 -9.46984 -8.94771 -8.85237 -8.82002 -6.91919 -5.80798 -3.13028 2.35806 2.44407 2.72563 3.20834 3.36815 3.41236 3.42180 4.05182 4.15411 4.41501 4.47610 4.64830 4.76813 5.00826 5.07432 5.19885 5.20764 5.22156 5.40076 5.42734 5.47995 5.54967 5.57998 5.67780 5.69956 5.74681 5.86839 5.95071 6.15093 6.21188 6.28520 6.33407 6.50465 6.58575 6.71506 6.86854 7.17652 7.30530 7.49291 7.51380 7.94489 7.95959 8.17401 9.01058 9.67130 10.55880 11.36189 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.023560 B = 0.003368 C = 0.003023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.164755 B = 8310.656276 C = 9260.437028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.150 3.850 3 H 0.088 0.912 4 N -0.711 5.711 5 C 0.506 3.494 6 O -0.530 6.530 7 C 0.112 3.888 8 H 0.104 0.896 9 C -0.121 4.121 10 C -0.153 4.153 11 C 0.519 3.481 12 O -0.533 6.533 13 N -0.600 5.600 14 C 0.093 3.907 15 C -0.146 4.146 16 C 0.171 3.829 17 N -0.612 5.612 18 C -0.225 4.225 19 H 0.079 0.921 20 C -0.007 4.007 21 N -0.922 5.922 22 Si 0.912 3.088 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.284 1.284 26 C 0.130 3.870 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.401 0.599 31 H 0.104 0.896 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.051 0.949 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.025 0.975 40 H 0.072 0.928 41 H 0.254 0.746 42 H 0.044 0.956 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.551 -4.268 14.318 16.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.046 3.954 3 H 0.106 0.894 4 N -0.361 5.361 5 C 0.290 3.710 6 O -0.406 6.406 7 C 0.004 3.996 8 H 0.121 0.879 9 C -0.159 4.159 10 C -0.193 4.193 11 C 0.307 3.693 12 O -0.410 6.410 13 N -0.334 5.334 14 C -0.048 4.048 15 C -0.167 4.167 16 C 0.045 3.955 17 N -0.338 5.338 18 C -0.352 4.352 19 H 0.097 0.903 20 C -0.204 4.204 21 N -0.569 5.569 22 Si 0.742 3.258 23 H -0.212 1.212 24 H -0.215 1.215 25 H -0.211 1.211 26 C 0.003 3.997 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.235 0.765 31 H 0.122 0.878 32 H 0.111 0.889 33 H 0.125 0.875 34 H 0.126 0.874 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.107 0.893 39 H 0.043 0.957 40 H 0.090 0.910 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -7.585 -3.122 14.696 16.831 hybrid contribution 0.535 -0.453 -1.110 1.313 sum -7.050 -3.575 13.586 15.718 Atomic orbital electron populations 1.22126 0.95582 1.01782 1.02119 1.21135 0.93504 0.97623 0.83184 0.89421 1.46097 1.66257 1.14248 1.09544 1.20549 0.78235 0.87593 0.84629 1.90712 1.49618 1.15572 1.84726 1.21671 0.97651 0.95759 0.84524 0.87884 1.22626 0.91265 1.05474 0.96583 1.22361 0.98302 1.02863 0.95794 1.20880 0.84872 0.79595 0.83938 1.90721 1.83278 1.45292 1.21683 1.47837 1.13572 1.53722 1.18250 1.21670 0.82337 0.97808 1.02998 1.23833 1.00998 0.99684 0.92138 1.22262 0.91638 0.98250 0.83311 1.45936 1.02451 1.83267 1.02154 1.18984 0.91109 1.42224 0.82916 0.90327 1.24771 0.95925 1.02324 0.97333 1.69800 1.05226 1.55554 1.26304 0.86206 0.78339 0.78013 0.83235 1.21188 1.21528 1.21082 1.22495 0.89757 0.96750 0.90709 0.92667 0.92896 0.91330 0.76467 0.87763 0.88930 0.87510 0.87391 0.92999 0.90721 0.89652 0.89319 0.95726 0.90982 0.93609 0.93756 0.94797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 9.29 37.16 0.35 -1.53 16 2 C 0.15 2.06 2.42 -67.93 -0.16 1.90 16 3 H 0.09 1.44 7.37 -51.93 -0.38 1.06 16 4 N -0.71 -7.94 5.08 -53.80 -0.27 -8.21 16 5 C 0.51 6.09 6.49 -10.98 -0.07 6.02 16 6 O -0.53 -8.45 14.26 5.56 0.08 -8.37 16 7 C 0.11 1.02 3.71 -68.17 -0.25 0.77 16 8 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 9 C -0.12 -0.95 6.67 -25.10 -0.17 -1.12 16 10 C -0.15 -1.26 6.86 -26.74 -0.18 -1.45 16 11 C 0.52 6.47 8.02 -10.86 -0.09 6.38 16 12 O -0.53 -8.67 17.59 5.56 0.10 -8.57 16 13 N -0.60 -6.84 3.00 -174.02 -0.52 -7.36 16 14 C 0.09 1.02 10.43 59.85 0.62 1.65 16 15 C -0.15 -2.40 3.50 -89.69 -0.31 -2.71 16 16 C 0.17 3.75 7.07 -2.98 -0.02 3.73 16 17 N -0.61 -15.15 3.70 -177.93 -0.66 -15.80 16 18 C -0.22 -6.18 10.70 -15.06 -0.16 -6.34 16 19 H 0.08 2.08 7.83 -52.49 -0.41 1.67 16 20 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 21 N -0.92 -26.60 11.38 55.49 0.63 -25.96 16 22 Si 0.91 21.72 29.55 -169.99 -5.02 16.70 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 C 0.13 2.47 7.56 -2.98 -0.02 2.45 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.81 7.43 -51.93 -0.39 0.42 16 30 H 0.40 3.46 8.60 -40.82 -0.35 3.11 16 31 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.09 0.88 7.91 -51.93 -0.41 0.47 16 33 H 0.11 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.88 7.93 -51.93 -0.41 0.47 16 37 H 0.08 0.99 5.98 -51.93 -0.31 0.68 16 38 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.02 0.58 7.96 -51.93 -0.41 0.17 16 40 H 0.07 1.74 7.16 -51.93 -0.37 1.37 16 41 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 42 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.03 0.64 8.06 -51.93 -0.42 0.22 16 LS Contribution 351.91 15.07 5.30 5.30 Total: -1.00 -35.03 351.91 -7.74 -42.78 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -6.81 Total: 0.06 kcal Atomic # 6 Polarization: 10.02 SS G_CDS: -0.57 Total: 9.45 kcal Atomic # 7 Polarization: -56.52 SS G_CDS: -0.82 Total: -57.34 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: 0.18 Total: -16.94 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.03 -7.74 -42.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970314942.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.755 kcal (2) G-P(sol) polarization free energy of solvation -35.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds