Wall clock time and date at job start Tue Mar 31 2020 04:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21279 * 119.99939 * 2 1 4 4 N 1.34778 * 119.99846 * 179.97438 * 2 1 3 5 5 C 1.47581 * 134.48983 * 179.97438 * 4 2 1 6 6 C 1.53953 * 86.11560 * 155.36545 * 5 4 2 7 7 C 1.50693 * 113.74353 * 137.95512 * 6 5 4 8 8 O 1.21285 * 119.99666 * 359.97438 * 7 6 5 9 9 N 1.34771 * 119.99950 * 180.02562 * 7 6 5 10 10 C 1.47425 * 125.65189 * 359.96495 * 9 7 6 11 11 C 1.54906 * 104.83815 * 204.15389 * 10 9 7 12 12 C 1.55157 * 101.57850 * 322.99441 * 11 10 9 13 13 H 1.09003 * 110.72490 * 277.13366 * 12 11 10 14 14 N 1.46505 * 110.71973 * 153.86334 * 12 11 10 15 15 C 1.36933 * 119.99900 * 91.47408 * 14 12 11 16 16 H 1.08001 * 120.00575 * 0.02562 * 15 14 12 17 17 C 1.38820 * 120.00046 * 180.02562 * 15 14 12 18 18 N 1.31624 * 119.99517 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00093 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47444 * 60.00070 * 19 17 15 21 21 H 1.48503 * 109.47151 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47187 * 299.99980 * 19 17 15 23 23 C 1.47027 * 125.64733 * 180.02562 * 9 7 6 24 24 H 1.09002 * 109.88429 * 59.49757 * 23 9 7 25 25 C 1.53005 * 110.00938 * 298.40164 * 23 9 7 26 26 C 1.47574 * 134.49400 * 0.02562 * 4 2 1 27 27 H 1.09004 * 109.47009 * 270.00337 * 1 2 3 28 28 H 1.09001 * 109.47041 * 30.00078 * 1 2 3 29 29 H 1.09000 * 109.47245 * 150.00506 * 1 2 3 30 30 H 1.08996 * 113.76798 * 41.06649 * 5 4 2 31 31 H 1.08997 * 113.87072 * 269.67781 * 5 4 2 32 32 H 1.08996 * 113.73719 * 269.16025 * 6 5 4 33 33 H 1.09009 * 110.35863 * 85.31658 * 10 9 7 34 34 H 1.09001 * 110.45922 * 323.04922 * 10 9 7 35 35 H 1.08994 * 111.00476 * 204.92106 * 11 10 9 36 36 H 1.09001 * 110.99920 * 81.06228 * 11 10 9 37 37 H 0.97000 * 120.00109 * 271.47584 * 14 12 11 38 38 H 0.97002 * 119.99392 * 180.02562 * 18 17 15 39 39 H 1.08994 * 109.47215 * 301.80506 * 25 23 9 40 40 H 1.09001 * 109.46642 * 61.80009 * 25 23 9 41 41 H 1.09002 * 109.46991 * 181.80028 * 25 23 9 42 42 H 1.09003 * 113.77663 * 90.33060 * 26 4 2 43 43 H 1.09003 * 113.77008 * 318.93719 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6098 -1.5365 0.0002 6 6 3.1597 -2.8618 0.6415 7 6 3.8593 -4.0742 0.0836 8 8 4.6905 -3.9461 -0.7903 9 7 3.5606 -5.3010 0.5550 10 6 2.5753 -5.5997 1.6101 11 6 3.0303 -6.9553 2.2056 12 6 3.5365 -7.6971 0.9404 13 1 2.7062 -8.1577 0.4052 14 7 4.5453 -8.6984 1.2954 15 6 4.1661 -9.9860 1.5665 16 1 3.1235 -10.2635 1.5182 17 6 5.1219 -10.9347 1.9034 18 7 6.3926 -10.5967 1.9617 19 14 4.6047 -12.6913 2.2725 20 1 3.9297 -13.2690 1.0826 21 1 5.8045 -13.5014 2.6036 22 1 3.6688 -12.6999 3.4254 23 6 4.1645 -6.5630 0.1030 24 1 5.2423 -6.5367 0.2635 25 6 3.8648 -6.7850 -1.3808 26 6 1.7864 -2.5892 0.0007 27 1 -0.3633 0.0001 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3634 -0.8900 -0.5137 30 1 4.2235 -0.9179 0.6549 31 1 4.0350 -1.6530 -0.9966 32 1 3.1497 -2.8408 1.7312 33 1 1.5767 -5.6894 1.1820 34 1 2.5905 -4.8244 2.3762 35 1 2.1920 -7.4839 2.6592 36 1 3.8370 -6.8148 2.9251 37 1 5.4818 -8.4494 1.3384 38 1 7.0605 -11.2597 2.1968 39 1 2.7860 -6.7977 -1.5357 40 1 4.3062 -5.9777 -1.9653 41 1 4.2888 -7.7375 -1.6986 42 1 1.6748 -3.0145 -0.9968 43 1 0.9439 -2.8114 0.6557 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986208046.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:03:57 Heat of formation + Delta-G solvation = -17.794394 kcal Electronic energy + Delta-G solvation = -24044.783626 eV Core-core repulsion = 20512.692742 eV Total energy + Delta-G solvation = -3532.090884 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.05066 -39.61730 -38.11205 -36.99248 -34.20301 -31.95084 -31.30751 -30.95460 -29.50600 -28.52976 -26.49927 -25.28242 -24.21818 -23.05560 -21.90818 -20.15132 -19.32229 -18.85745 -17.48223 -17.30152 -17.24220 -16.16503 -16.13695 -15.48412 -15.09701 -14.79795 -14.06694 -13.90283 -13.54322 -13.46821 -13.37261 -13.13410 -13.02950 -12.84552 -12.67489 -12.59859 -12.18687 -12.12279 -11.91375 -11.69635 -11.37533 -11.22695 -11.07680 -10.88070 -10.65797 -10.32914 -10.23445 -10.11268 -9.83329 -9.65431 -9.04453 -8.99892 -8.51840 -7.09843 -5.86961 -3.17852 2.29177 2.43357 2.54123 3.04815 3.37510 3.42423 3.43688 3.95378 4.10270 4.41234 4.49768 4.59285 4.75982 4.84134 4.93525 4.94327 5.03434 5.11696 5.17429 5.27227 5.30944 5.36683 5.40388 5.50702 5.54664 5.59990 5.71315 5.74890 5.86084 6.01277 6.06129 6.21736 6.37714 6.50643 6.54167 6.63836 6.83881 7.32749 7.59377 7.63832 7.82796 8.18076 8.30266 9.41686 9.95646 10.30008 11.35002 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.039008 B = 0.002880 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.633725 B = 9719.650705 C = 9994.208812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.534 3.466 3 O -0.547 6.547 4 N -0.648 5.648 5 C 0.129 3.871 6 C -0.147 4.147 7 C 0.536 3.464 8 O -0.537 6.537 9 N -0.604 5.604 10 C 0.098 3.902 11 C -0.158 4.158 12 C 0.177 3.823 13 H 0.068 0.932 14 N -0.714 5.714 15 C -0.247 4.247 16 H 0.072 0.928 17 C -0.009 4.009 18 N -0.929 5.929 19 Si 0.909 3.091 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.285 1.285 23 C 0.124 3.876 24 H 0.078 0.922 25 C -0.154 4.154 26 C 0.121 3.879 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.102 0.898 32 H 0.125 0.875 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.386 0.614 38 H 0.258 0.742 39 H 0.050 0.950 40 H 0.061 0.939 41 H 0.070 0.930 42 H 0.093 0.907 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.276 15.381 -2.043 20.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.325 3.675 3 O -0.425 6.425 4 N -0.384 5.384 5 C 0.006 3.994 6 C -0.169 4.169 7 C 0.323 3.677 8 O -0.415 6.415 9 N -0.337 5.337 10 C -0.026 4.026 11 C -0.199 4.199 12 C 0.065 3.935 13 H 0.086 0.914 14 N -0.354 5.354 15 C -0.378 4.378 16 H 0.090 0.910 17 C -0.206 4.206 18 N -0.577 5.577 19 Si 0.740 3.260 20 H -0.212 1.212 21 H -0.217 1.217 22 H -0.212 1.212 23 C 0.020 3.980 24 H 0.096 0.904 25 C -0.212 4.212 26 C -0.002 4.002 27 H 0.112 0.888 28 H 0.112 0.888 29 H 0.098 0.902 30 H 0.106 0.894 31 H 0.120 0.880 32 H 0.143 0.857 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.220 0.780 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.111 0.889 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.660 16.088 -2.519 20.626 hybrid contribution -0.002 -1.047 0.411 1.125 sum -12.662 15.041 -2.108 19.774 Atomic orbital electron populations 1.21842 0.91173 1.04842 1.04812 1.20518 0.90254 0.81617 0.75133 1.90737 1.70865 1.30427 1.50434 1.50064 1.09231 1.05351 1.73796 1.23053 0.83291 0.90789 1.02248 1.23322 0.97004 0.93847 1.02702 1.19714 0.82749 0.82818 0.82445 1.90713 1.33926 1.85479 1.31347 1.48588 1.40844 1.05809 1.38486 1.22410 0.91871 0.98724 0.89557 1.23594 1.01816 0.93753 1.00731 1.21237 0.92600 0.88003 0.91652 0.91444 1.42344 1.05011 1.06149 1.81878 1.19157 0.92958 0.85744 1.39898 0.91026 1.24776 0.95287 0.98345 1.02153 1.69656 0.99677 1.33991 1.54343 0.86253 0.77123 0.84531 0.78143 1.21160 1.21662 1.21188 1.22003 0.98460 0.82651 0.94844 0.90406 1.22034 1.01075 1.02612 0.95446 1.23115 0.96407 0.79264 1.01420 0.88767 0.88769 0.90226 0.89416 0.87995 0.85747 0.91551 0.91298 0.90491 0.90634 0.77956 0.93260 0.93127 0.92043 0.91080 0.88898 0.88896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.03 10.14 36.01 0.37 -0.66 16 2 C 0.53 5.76 8.17 -10.98 -0.09 5.67 16 3 O -0.55 -8.39 17.83 5.56 0.10 -8.29 16 4 N -0.65 -6.24 3.61 -178.39 -0.64 -6.89 16 5 C 0.13 1.34 8.18 -2.97 -0.02 1.32 16 6 C -0.15 -1.34 3.51 -90.83 -0.32 -1.66 16 7 C 0.54 6.99 7.18 -10.99 -0.08 6.91 16 8 O -0.54 -8.97 14.94 5.55 0.08 -8.88 16 9 N -0.60 -7.97 3.07 -163.01 -0.50 -8.47 16 10 C 0.10 1.04 6.69 -2.53 -0.02 1.03 16 11 C -0.16 -2.29 6.77 -24.58 -0.17 -2.46 16 12 C 0.18 3.12 3.14 -66.09 -0.21 2.91 16 13 H 0.07 1.19 7.80 -51.93 -0.41 0.78 16 14 N -0.71 -16.52 5.22 -51.65 -0.27 -16.79 16 15 C -0.25 -6.38 9.96 -15.06 -0.15 -6.53 16 16 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 17 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 18 N -0.93 -27.01 13.06 55.49 0.72 -26.28 16 19 Si 0.91 21.37 29.55 -169.99 -5.02 16.35 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 22 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 23 C 0.12 2.01 3.20 -66.95 -0.21 1.80 16 24 H 0.08 1.46 7.72 -51.93 -0.40 1.06 16 25 C -0.15 -2.36 9.11 37.16 0.34 -2.02 16 26 C 0.12 0.87 7.94 -2.96 -0.02 0.84 16 27 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.35 7.84 -51.93 -0.41 -0.06 16 30 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.10 1.18 7.41 -51.93 -0.38 0.80 16 32 H 0.12 0.95 7.46 -51.93 -0.39 0.56 16 33 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 34 H 0.07 0.59 7.24 -51.93 -0.38 0.21 16 35 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 36 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.39 9.74 7.56 -40.82 -0.31 9.43 16 38 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.98 6.90 -51.93 -0.36 0.62 16 41 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.09 0.67 8.09 -51.93 -0.42 0.25 16 43 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 355.53 15.07 5.36 5.36 Total: -1.00 -33.17 355.53 -7.65 -40.82 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -6.80 Total: 6.28 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: -0.68 Total: 6.80 kcal Atomic # 7 Polarization: -57.74 SS G_CDS: -0.69 Total: -58.43 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: 0.18 Total: -17.18 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.17 -7.65 -40.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986208046.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.028 kcal (2) G-P(sol) polarization free energy of solvation -33.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds