Wall clock time and date at job start Tue Mar 31 2020 03:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 110.00321 * 2 1 4 4 C 1.54333 * 109.99004 * 238.95830 * 2 1 3 5 5 C 1.55156 * 103.02551 * 218.66920 * 4 2 1 6 6 H 1.08997 * 111.03593 * 277.22355 * 5 4 2 7 7 N 1.46494 * 111.00563 * 153.38064 * 5 4 2 8 8 C 1.36944 * 119.99814 * 161.35300 * 7 5 4 9 9 H 1.08006 * 119.99600 * 359.97438 * 8 7 5 10 10 C 1.38812 * 119.99949 * 180.02562 * 8 7 5 11 11 N 1.31616 * 119.99912 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99793 * 179.97438 * 10 8 7 13 13 H 1.48499 * 109.47323 * 90.00024 * 12 10 8 14 14 H 1.48502 * 109.46982 * 209.99850 * 12 10 8 15 15 H 1.48502 * 109.47092 * 329.99487 * 12 10 8 16 16 C 1.54911 * 101.57846 * 35.30562 * 5 4 2 17 17 N 1.47028 * 109.87931 * 121.09976 * 2 1 3 18 18 C 1.34777 * 125.64354 * 298.38503 * 17 2 1 19 19 O 1.21283 * 120.00463 * 359.72563 * 18 17 2 20 20 C 1.50700 * 119.99675 * 179.44686 * 18 17 2 21 21 N 1.46499 * 109.47257 * 180.27849 * 20 18 17 22 22 C 1.46767 * 124.34929 * 269.72829 * 21 20 18 23 23 C 1.54655 * 105.38079 * 162.85134 * 22 21 20 24 24 C 1.54631 * 101.69012 * 25.76573 * 23 22 21 25 25 C 1.34423 * 124.35144 * 90.01992 * 21 20 18 26 26 O 1.21285 * 124.94023 * 0.39528 * 25 21 20 27 27 H 1.09004 * 109.46854 * 300.35671 * 1 2 3 28 28 H 1.08997 * 109.46778 * 60.35445 * 1 2 3 29 29 H 1.08997 * 109.47185 * 180.35990 * 1 2 3 30 30 H 1.08994 * 110.84853 * 100.19898 * 4 2 1 31 31 H 1.09001 * 110.51971 * 336.98212 * 4 2 1 32 32 H 0.96993 * 120.00236 * 341.35453 * 7 5 4 33 33 H 0.97005 * 119.99785 * 180.02562 * 11 10 8 34 34 H 1.08998 * 110.36692 * 204.15432 * 16 5 4 35 35 H 1.09003 * 110.36327 * 81.83254 * 16 5 4 36 36 H 1.09009 * 109.47352 * 300.27556 * 20 18 17 37 37 H 1.08998 * 109.47585 * 60.27844 * 20 18 17 38 38 H 1.08998 * 110.24406 * 281.97885 * 22 21 20 39 39 H 1.08997 * 110.24887 * 43.97982 * 22 21 20 40 40 H 1.09000 * 111.19441 * 267.58732 * 23 22 21 41 41 H 1.09004 * 110.85320 * 143.79036 * 23 22 21 42 42 H 1.08996 * 110.48382 * 216.31158 * 24 23 22 43 43 H 1.08995 * 110.48660 * 93.66260 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9029 1.0242 0.0000 4 6 2.0576 -0.7479 -1.2426 5 6 3.2863 -1.5185 -0.6915 6 1 4.1673 -0.8776 -0.6579 7 7 3.5474 -2.7244 -1.4813 8 6 4.7733 -3.3316 -1.4190 9 1 5.5477 -2.9211 -0.7879 10 6 5.0209 -4.4739 -2.1678 11 7 4.0772 -4.9737 -2.9372 12 14 6.6933 -5.3017 -2.0833 13 1 6.6900 -6.3148 -0.9976 14 1 6.9827 -5.9661 -3.3795 15 1 7.7368 -4.2821 -1.8059 16 6 2.8099 -1.8826 0.7369 17 7 2.0300 -0.7142 1.1839 18 6 1.8074 -0.3621 2.4657 19 8 1.1476 0.6238 2.7180 20 6 2.3732 -1.1969 3.5855 21 7 1.9882 -0.6128 4.8727 22 6 2.7798 0.3881 5.5978 23 6 1.8081 1.0134 6.6257 24 6 0.7859 -0.1295 6.8260 25 6 0.8674 -0.9288 5.5442 26 8 0.0415 -1.7370 5.1758 27 1 -0.3633 0.5194 0.8868 28 1 -0.3633 0.5083 -0.8931 29 1 -0.3633 -1.0276 0.0065 30 1 2.3597 -0.0452 -2.0191 31 1 1.3053 -1.4407 -1.6197 32 1 2.8520 -3.0928 -2.0483 33 1 4.2501 -5.7722 -3.4601 34 1 3.6655 -2.0413 1.3933 35 1 2.1800 -2.7719 0.7115 36 1 1.9819 -2.2119 3.5156 37 1 3.4602 -1.2204 3.5079 38 1 3.6163 -0.0897 6.1075 39 1 3.1427 1.1522 4.9104 40 1 1.3248 1.9026 6.2209 41 1 2.3243 1.2427 7.5580 42 1 -0.2172 0.2752 6.9601 43 1 1.0664 -0.7470 7.6792 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987982511.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:51 Heat of formation + Delta-G solvation = -72.148514 kcal Electronic energy + Delta-G solvation = -24335.087342 eV Core-core repulsion = 20800.639487 eV Total energy + Delta-G solvation = -3534.447855 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.73678 -40.82029 -38.74461 -37.42483 -35.98141 -34.10399 -33.26021 -32.67386 -30.10007 -28.48783 -28.43046 -26.76067 -25.78666 -23.33083 -22.74852 -21.83724 -20.77317 -19.86426 -19.22481 -18.40119 -17.81389 -17.58118 -17.10984 -16.64327 -16.43299 -15.77332 -15.52662 -15.33252 -14.88650 -14.76267 -14.57227 -14.46201 -14.25676 -13.85118 -13.78372 -13.51114 -13.38562 -13.14212 -13.00580 -12.84275 -12.83309 -12.31537 -12.30518 -12.12558 -12.05028 -11.89472 -11.73255 -11.52415 -11.18342 -10.94536 -10.93744 -9.78760 -9.71908 -9.04962 -7.93320 -5.23610 1.35967 1.50716 1.52400 1.52693 1.60934 1.80943 2.19189 2.58512 3.34076 3.38440 3.40247 3.62537 3.77802 3.82542 3.95251 4.05874 4.08436 4.13662 4.19818 4.26278 4.29601 4.43170 4.48461 4.64496 4.68785 4.70164 4.73808 4.82131 4.86663 5.02491 5.07691 5.09838 5.17066 5.23190 5.31359 5.37455 5.44539 5.56467 6.06139 6.27301 6.47100 7.00436 7.10906 7.35161 8.06512 8.30136 9.29712 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.018618 B = 0.003657 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.577886 B = 7655.747253 C = 8511.834078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.139 3.861 3 H 0.080 0.920 4 C -0.124 4.124 5 C 0.167 3.833 6 H 0.070 0.930 7 N -0.724 5.724 8 C -0.242 4.242 9 H 0.084 0.916 10 C -0.071 4.071 11 N -0.968 5.968 12 Si 0.970 3.030 13 H -0.288 1.288 14 H -0.301 1.301 15 H -0.266 1.266 16 C 0.084 3.916 17 N -0.607 5.607 18 C 0.507 3.493 19 O -0.571 6.571 20 C 0.109 3.891 21 N -0.606 5.606 22 C 0.096 3.904 23 C -0.118 4.118 24 C -0.145 4.145 25 C 0.501 3.499 26 O -0.591 6.591 27 H 0.046 0.954 28 H 0.085 0.915 29 H 0.045 0.955 30 H 0.095 0.905 31 H 0.071 0.929 32 H 0.376 0.624 33 H 0.250 0.750 34 H 0.085 0.915 35 H 0.054 0.946 36 H 0.100 0.900 37 H 0.142 0.858 38 H 0.104 0.896 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.128 0.872 42 H 0.103 0.897 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.990 13.822 17.932 22.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.036 3.964 3 H 0.098 0.902 4 C -0.163 4.163 5 C 0.057 3.943 6 H 0.088 0.912 7 N -0.363 5.363 8 C -0.373 4.373 9 H 0.102 0.898 10 C -0.264 4.264 11 N -0.618 5.618 12 Si 0.799 3.201 13 H -0.216 1.216 14 H -0.228 1.228 15 H -0.191 1.191 16 C -0.042 4.042 17 N -0.341 5.341 18 C 0.296 3.704 19 O -0.450 6.450 20 C -0.017 4.017 21 N -0.338 5.338 22 C -0.025 4.025 23 C -0.155 4.155 24 C -0.184 4.184 25 C 0.292 3.708 26 O -0.472 6.472 27 H 0.065 0.935 28 H 0.104 0.896 29 H 0.064 0.936 30 H 0.114 0.886 31 H 0.090 0.910 32 H 0.208 0.792 33 H 0.059 0.941 34 H 0.104 0.896 35 H 0.072 0.928 36 H 0.118 0.882 37 H 0.159 0.841 38 H 0.122 0.878 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.146 0.854 42 H 0.121 0.879 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.533 13.901 17.922 22.733 hybrid contribution 0.215 -1.142 -0.826 1.426 sum -1.318 12.759 17.096 21.373 Atomic orbital electron populations 1.22040 0.94859 1.01577 1.02552 1.21566 0.94431 0.96274 0.84146 0.90175 1.22909 0.97579 0.99457 0.96333 1.21439 0.95950 0.87974 0.88951 0.91181 1.42465 1.13309 1.28891 1.51667 1.19651 0.91164 1.05687 1.20821 0.89805 1.25538 1.01140 0.99765 0.99945 1.69813 1.34437 1.24602 1.32996 0.85194 0.80126 0.78529 0.76212 1.21565 1.22799 1.19065 1.23233 0.94710 0.87114 0.99158 1.48689 1.52087 1.28539 1.04823 1.21245 0.80289 0.85616 0.83291 1.90630 1.41430 1.29240 1.83738 1.21238 1.03096 0.96579 0.80754 1.48097 1.23487 1.43211 1.19013 1.22479 0.94826 0.90459 0.94714 1.22652 0.95626 0.96629 1.00621 1.22357 1.03318 0.98106 0.94666 1.21946 0.79770 0.81588 0.87541 1.90690 1.43926 1.38242 1.74336 0.93534 0.89573 0.93611 0.88631 0.91033 0.79159 0.94080 0.89627 0.92801 0.88173 0.84066 0.87809 0.90417 0.90513 0.85379 0.87905 0.85311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.35 9.11 71.98 0.66 -3.69 16 2 C 0.14 4.00 3.46 45.34 0.16 4.16 16 3 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 4 C -0.12 -3.69 6.11 31.79 0.19 -3.50 16 5 C 0.17 5.86 3.69 46.38 0.17 6.03 16 6 H 0.07 2.41 8.13 -2.39 -0.02 2.39 16 7 N -0.72 -33.22 5.28 -316.38 -1.67 -34.89 16 8 C -0.24 -12.27 9.98 84.03 0.84 -11.43 16 9 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 10 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 11 N -0.97 -56.80 13.06 21.65 0.28 -56.52 16 12 Si 0.97 43.65 29.55 68.60 2.03 45.68 16 13 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 14 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 15 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 16 C 0.08 2.66 6.38 86.86 0.55 3.21 16 17 N -0.61 -18.43 3.06 -788.03 -2.41 -20.84 16 18 C 0.51 15.80 7.71 87.66 0.68 16.48 16 19 O -0.57 -20.87 15.48 -3.04 -0.05 -20.92 16 20 C 0.11 2.74 5.42 85.63 0.46 3.21 16 21 N -0.61 -14.10 2.42 -821.95 -1.99 -16.09 16 22 C 0.10 1.31 7.36 86.89 0.64 1.95 16 23 C -0.12 -1.19 7.19 31.71 0.23 -0.96 16 24 C -0.14 -2.21 6.86 30.59 0.21 -2.00 16 25 C 0.50 13.70 8.02 87.90 0.70 14.40 16 26 O -0.59 -22.46 17.59 -3.05 -0.05 -22.51 16 27 H 0.05 1.50 6.89 -2.39 -0.02 1.49 16 28 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 31 H 0.07 2.25 7.70 -2.39 -0.02 2.23 16 32 H 0.38 18.89 7.71 -92.71 -0.71 18.17 16 33 H 0.25 14.39 8.31 -92.70 -0.77 13.62 16 34 H 0.09 2.43 7.49 -2.39 -0.02 2.41 16 35 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.10 2.77 7.92 -2.38 -0.02 2.75 16 37 H 0.14 2.55 7.85 -2.39 -0.02 2.53 16 38 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.13 0.37 8.14 -2.38 -0.02 0.35 16 42 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -74.31 353.93 2.38 -71.92 By element: Atomic # 1 Polarization: 29.42 SS G_CDS: 0.29 Total: 29.71 kcal Atomic # 6 Polarization: 18.51 SS G_CDS: 5.96 Total: 24.47 kcal Atomic # 7 Polarization: -122.55 SS G_CDS: -5.79 Total: -128.34 kcal Atomic # 8 Polarization: -43.33 SS G_CDS: -0.10 Total: -43.43 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -74.31 2.38 -71.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987982511.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.227 kcal (2) G-P(sol) polarization free energy of solvation -74.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds