Wall clock time and date at job start Tue Mar 31 2020 04:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 110.88143 * 2 1 4 4 C 1.55154 * 110.99928 * 236.12387 * 2 1 3 5 5 C 1.54329 * 102.93916 * 206.41919 * 4 2 1 6 6 N 1.47021 * 107.27049 * 22.19395 * 5 4 2 7 7 C 1.34772 * 125.64950 * 181.02295 * 6 5 4 8 8 O 1.21351 * 119.99944 * 180.02562 * 7 6 5 9 9 C 1.49452 * 119.99969 * 0.02562 * 7 6 5 10 10 O 1.21349 * 120.00077 * 0.02562 * 9 7 6 11 11 N 1.34780 * 119.99715 * 180.02562 * 9 7 6 12 12 C 1.46502 * 119.99429 * 180.02562 * 11 9 7 13 13 H 1.09003 * 110.88965 * 31.11885 * 12 11 9 14 14 C 1.55158 * 111.00219 * 155.00102 * 12 11 9 15 15 C 1.54319 * 102.94410 * 82.57210 * 14 12 11 16 16 N 1.47021 * 107.27252 * 22.18969 * 15 14 12 17 17 C 1.36938 * 125.65221 * 181.02638 * 16 15 14 18 18 H 1.08003 * 120.00337 * 185.84575 * 17 16 15 19 19 C 1.38817 * 119.99764 * 5.84393 * 17 16 15 20 20 N 1.31620 * 120.00070 * 7.31981 * 19 17 16 21 21 Si 1.86800 * 119.99820 * 187.32267 * 19 17 16 22 22 H 1.48502 * 109.46976 * 265.01263 * 21 19 17 23 23 H 1.48492 * 109.47389 * 25.01241 * 21 19 17 24 24 H 1.48498 * 109.46851 * 145.01544 * 21 19 17 25 25 C 1.47425 * 108.70421 * 1.28958 * 16 15 14 26 26 C 1.47431 * 108.70291 * 1.28710 * 6 5 4 27 27 H 1.09001 * 109.46913 * 183.88327 * 1 2 3 28 28 H 1.09000 * 109.46990 * 303.87533 * 1 2 3 29 29 H 1.08998 * 109.47624 * 63.87507 * 1 2 3 30 30 H 1.09006 * 110.72190 * 88.06414 * 4 2 1 31 31 H 1.08996 * 110.72565 * 324.78308 * 4 2 1 32 32 H 1.09003 * 109.88019 * 262.77997 * 5 4 2 33 33 H 1.08998 * 109.88273 * 141.61016 * 5 4 2 34 34 H 0.96995 * 120.00311 * 359.97438 * 11 9 7 35 35 H 1.08994 * 110.72068 * 324.20648 * 14 12 11 36 36 H 1.09000 * 110.72109 * 200.93226 * 14 12 11 37 37 H 1.09007 * 109.87935 * 262.77579 * 15 14 12 38 38 H 1.08999 * 109.88700 * 141.61306 * 15 14 12 39 39 H 0.96992 * 119.99883 * 179.97438 * 20 19 17 40 40 H 1.09005 * 110.36495 * 94.47926 * 25 16 15 41 41 H 1.08999 * 110.36968 * 216.80344 * 25 16 15 42 42 H 1.08989 * 110.36542 * 94.48290 * 26 6 5 43 43 H 1.09001 * 110.36280 * 216.80860 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9185 1.0184 0.0000 4 6 2.0860 -0.8074 -1.2026 5 6 3.4674 -1.2738 -0.6967 6 7 3.4272 -1.2433 0.7727 7 6 4.4477 -1.5621 1.5932 8 8 4.3008 -1.5010 2.7962 9 6 5.7603 -1.9909 1.0214 10 8 5.9073 -2.0516 -0.1816 11 7 6.7807 -2.3102 1.8420 12 6 8.0675 -2.7301 1.2815 13 1 8.2499 -2.2461 0.3220 14 6 9.2253 -2.4487 2.2753 15 6 9.1737 -3.6676 3.2203 16 7 8.4894 -4.7506 2.4989 17 6 8.2224 -5.9976 2.9975 18 1 7.7982 -6.7562 2.3564 19 6 8.4972 -6.2869 4.3272 20 7 8.8776 -5.3277 5.1443 21 14 8.3271 -8.0374 4.9566 22 1 6.9837 -8.2168 5.5636 23 1 8.4909 -8.9876 3.8273 24 1 9.3714 -8.2992 5.9794 25 6 8.1438 -4.2737 1.1473 26 6 2.0836 -0.8124 1.2000 27 1 -0.3633 -1.0253 0.0696 28 1 -0.3633 0.5728 0.8532 29 1 -0.3634 0.4525 -0.9226 30 1 2.1921 -0.1690 -2.0798 31 1 1.4467 -1.6626 -1.4217 32 1 4.2425 -0.5991 -1.0603 33 1 3.6650 -2.2888 -1.0411 34 1 6.6633 -2.2614 2.8036 35 1 9.0449 -1.5257 2.8262 36 1 10.1807 -2.4064 1.7524 37 1 8.6171 -3.4138 4.1226 38 1 10.1855 -3.9775 3.4813 39 1 9.0692 -5.5297 6.0734 40 1 8.9191 -4.5570 0.4354 41 1 7.1788 -4.6754 0.8385 42 1 1.4525 -1.6787 1.3980 43 1 2.1516 -0.1810 2.0859 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015963267.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:00:29 Heat of formation + Delta-G solvation = -39.478619 kcal Electronic energy + Delta-G solvation = -24320.032503 eV Core-core repulsion = 20787.001321 eV Total energy + Delta-G solvation = -3533.031182 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.66092 -39.04227 -37.68390 -37.17420 -33.91329 -33.01057 -31.77166 -29.86464 -29.23914 -27.73472 -27.04991 -24.78576 -24.02205 -22.53219 -20.69760 -20.18414 -19.97099 -19.67979 -17.77118 -16.87802 -16.81487 -16.38333 -15.73484 -15.39654 -14.64118 -14.41088 -14.19922 -13.98380 -13.84358 -13.52110 -13.37158 -13.14005 -12.83322 -12.72261 -12.39068 -12.08713 -11.97302 -11.81695 -11.54205 -11.22161 -11.03428 -11.00487 -10.90021 -10.83020 -10.77900 -10.34524 -10.12743 -9.97133 -9.69578 -9.31758 -8.90541 -8.75298 -8.56669 -6.81244 -5.69481 -3.05265 1.63470 2.40999 3.41300 3.41796 3.46973 3.48908 3.63933 4.17663 4.34099 4.51296 4.51445 4.66895 5.01590 5.05838 5.12926 5.24178 5.31653 5.37125 5.41120 5.47725 5.52482 5.60575 5.68403 5.71863 5.78597 5.80503 5.81873 5.95802 6.09652 6.14074 6.30962 6.43644 6.46012 6.62742 6.87359 7.16141 7.43890 7.54048 7.62718 7.80095 7.92268 8.26371 8.27695 9.21542 9.82361 10.47402 11.40161 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.021683 B = 0.003553 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.996562 B = 7879.401503 C = 8430.056133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.107 4.107 3 H 0.086 0.914 4 C -0.132 4.132 5 C 0.109 3.891 6 N -0.597 5.597 7 C 0.521 3.479 8 O -0.517 6.517 9 C 0.508 3.492 10 O -0.530 6.530 11 N -0.669 5.669 12 C 0.125 3.875 13 H 0.094 0.906 14 C -0.152 4.152 15 C 0.167 3.833 16 N -0.602 5.602 17 C -0.228 4.228 18 H 0.076 0.924 19 C -0.008 4.008 20 N -0.919 5.919 21 Si 0.911 3.089 22 H -0.289 1.289 23 H -0.281 1.281 24 H -0.290 1.290 25 C 0.126 3.874 26 C 0.108 3.892 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.083 0.917 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.416 0.584 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.032 0.968 39 H 0.252 0.748 40 H 0.032 0.968 41 H 0.042 0.958 42 H 0.073 0.927 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.488 12.823 -11.706 21.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.126 4.126 3 H 0.104 0.896 4 C -0.170 4.170 5 C -0.014 4.014 6 N -0.332 5.332 7 C 0.304 3.696 8 O -0.392 6.392 9 C 0.288 3.712 10 O -0.408 6.408 11 N -0.320 5.320 12 C 0.020 3.980 13 H 0.112 0.888 14 C -0.191 4.191 15 C 0.042 3.958 16 N -0.329 5.329 17 C -0.356 4.356 18 H 0.094 0.906 19 C -0.204 4.204 20 N -0.567 5.567 21 Si 0.742 3.258 22 H -0.217 1.217 23 H -0.207 1.207 24 H -0.217 1.217 25 C -0.002 4.002 26 C -0.014 4.014 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.253 0.747 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.050 0.950 39 H 0.062 0.938 40 H 0.050 0.950 41 H 0.061 0.939 42 H 0.091 0.909 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -12.326 12.656 -11.635 21.153 hybrid contribution -0.078 -1.002 0.873 1.332 sum -12.404 11.654 -10.761 20.136 Atomic orbital electron populations 1.21697 0.93545 1.02389 1.02208 1.22417 0.96316 0.99422 0.94437 0.89563 1.22832 0.95823 1.00329 0.98023 1.22167 0.97500 1.03047 0.78671 1.48220 1.11620 1.65479 1.07900 1.20048 0.84773 0.78663 0.86115 1.90788 1.82777 1.51572 1.14062 1.19820 0.85028 0.79376 0.86947 1.90701 1.82655 1.53261 1.14158 1.45671 1.11315 1.63792 1.11195 1.22351 0.81518 0.96935 0.97245 0.88782 1.23215 0.96708 1.00762 0.98405 1.21289 0.97130 0.84267 0.93087 1.44473 1.67377 1.11693 1.09378 1.19032 1.36315 0.86733 0.93519 0.90571 1.24793 1.01905 0.97833 0.95860 1.69932 1.52302 1.30035 1.04403 0.86112 0.77296 0.84020 0.78412 1.21667 1.20692 1.21655 1.21998 0.98147 0.90610 0.89404 1.22464 0.82341 0.98616 0.98009 0.92180 0.92204 0.91998 0.89843 0.90389 0.90299 0.90317 0.74732 0.91327 0.90724 0.91736 0.94995 0.93774 0.95033 0.93930 0.90854 0.90051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.79 9.31 37.16 0.35 -0.44 16 2 C -0.11 -0.78 3.65 -88.36 -0.32 -1.11 16 3 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 4 C -0.13 -0.98 6.42 -24.90 -0.16 -1.14 16 5 C 0.11 1.18 5.49 -3.06 -0.02 1.17 16 6 N -0.60 -7.90 3.32 -170.89 -0.57 -8.46 16 7 C 0.52 8.63 7.91 -11.59 -0.09 8.54 16 8 O -0.52 -9.83 16.73 5.50 0.09 -9.74 16 9 C 0.51 8.81 7.86 -11.58 -0.09 8.72 16 10 O -0.53 -9.39 13.76 5.50 0.08 -9.32 16 11 N -0.67 -12.05 5.19 -52.04 -0.27 -12.32 16 12 C 0.12 2.24 3.43 -65.66 -0.23 2.01 16 13 H 0.09 1.56 7.54 -51.93 -0.39 1.17 16 14 C -0.15 -2.71 6.54 -24.90 -0.16 -2.87 16 15 C 0.17 3.94 5.44 -3.07 -0.02 3.92 16 16 N -0.60 -15.31 3.39 -169.93 -0.58 -15.88 16 17 C -0.23 -6.41 10.26 -15.06 -0.15 -6.56 16 18 H 0.08 2.10 7.84 -52.48 -0.41 1.69 16 19 C -0.01 -0.21 5.45 -17.43 -0.09 -0.31 16 20 N -0.92 -26.95 10.46 55.49 0.58 -26.37 16 21 Si 0.91 22.41 29.56 -169.99 -5.02 17.39 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 C 0.13 2.66 6.95 -2.41 -0.02 2.65 16 26 C 0.11 1.12 6.38 -2.41 -0.02 1.10 16 27 H 0.06 0.34 8.07 -51.93 -0.42 -0.08 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.53 8.04 -51.93 -0.42 0.11 16 32 H 0.08 0.89 7.58 -51.93 -0.39 0.50 16 33 H 0.08 0.94 7.69 -51.93 -0.40 0.54 16 34 H 0.42 7.87 8.14 -40.82 -0.33 7.54 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.06 1.69 6.88 -51.93 -0.36 1.34 16 38 H 0.03 0.82 7.98 -51.93 -0.41 0.41 16 39 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 40 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.07 0.74 7.99 -51.94 -0.41 0.32 16 43 H 0.08 0.88 8.03 -51.93 -0.42 0.47 16 LS Contribution 348.06 15.07 5.25 5.25 Total: -1.00 -32.20 348.06 -8.35 -40.56 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -6.89 Total: 3.22 kcal Atomic # 6 Polarization: 16.71 SS G_CDS: -1.02 Total: 15.69 kcal Atomic # 7 Polarization: -62.20 SS G_CDS: -0.83 Total: -63.04 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: 0.17 Total: -19.06 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.20 -8.35 -40.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015963267.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.077 kcal (2) G-P(sol) polarization free energy of solvation -32.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds