Wall clock time and date at job start Tue Mar 31 2020 04:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.47028 * 2 1 4 4 C 1.46766 * 124.35254 * 270.05233 * 3 2 1 5 5 C 1.54480 * 105.47468 * 162.96273 * 4 3 2 6 6 H 1.09005 * 111.00087 * 267.27866 * 5 4 3 7 7 C 1.50706 * 110.96825 * 143.53647 * 5 4 3 8 8 O 1.21283 * 120.00003 * 6.16167 * 7 5 4 9 9 N 1.34769 * 119.99945 * 186.16611 * 7 5 4 10 10 C 1.46497 * 120.00274 * 179.97438 * 9 7 5 11 11 H 1.09002 * 112.90477 * 336.24972 * 10 9 7 12 12 C 1.53779 * 113.61581 * 107.50145 * 10 9 7 13 13 C 1.53779 * 87.08402 * 139.98450 * 12 10 9 14 14 H 1.08997 * 113.61646 * 220.02209 * 13 12 10 15 15 N 1.46499 * 113.61746 * 89.11614 * 13 12 10 16 16 C 1.36935 * 120.00065 * 107.50394 * 15 13 12 17 17 H 1.07999 * 119.99835 * 359.97438 * 16 15 13 18 18 C 1.38812 * 120.00004 * 180.02562 * 16 15 13 19 19 N 1.31626 * 119.99911 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00127 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47074 * 90.00040 * 20 18 16 22 22 H 1.48497 * 109.47297 * 210.00175 * 20 18 16 23 23 H 1.48501 * 109.46975 * 330.00190 * 20 18 16 24 24 C 1.53784 * 113.61569 * 204.99925 * 10 9 7 25 25 C 1.54621 * 101.76573 * 25.41317 * 5 4 3 26 26 C 1.34423 * 124.35279 * 90.02488 * 3 2 1 27 27 O 1.21285 * 124.93900 * 0.39334 * 26 3 2 28 28 H 1.09003 * 109.46651 * 299.99608 * 1 2 3 29 29 H 1.08995 * 109.47158 * 60.00132 * 1 2 3 30 30 H 1.08998 * 109.46957 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47383 * 240.00526 * 2 1 3 32 32 H 1.08997 * 109.47615 * 120.00107 * 2 1 3 33 33 H 1.08995 * 110.24539 * 43.95584 * 4 3 2 34 34 H 1.09000 * 110.24476 * 281.96296 * 4 3 2 35 35 H 0.97009 * 120.00192 * 359.97438 * 9 7 5 36 36 H 1.09006 * 113.61307 * 25.43652 * 12 10 9 37 37 H 1.08999 * 113.69146 * 254.54138 * 12 10 9 38 38 H 0.97001 * 119.99349 * 287.50724 * 15 13 12 39 39 H 0.96994 * 119.99603 * 179.97438 * 19 18 16 40 40 H 1.09004 * 113.61451 * 105.47149 * 24 10 9 41 41 H 1.08994 * 113.61477 * 334.56451 * 24 10 9 42 42 H 1.09004 * 110.48654 * 93.88493 * 25 5 4 43 43 H 1.09002 * 110.48816 * 216.38907 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2933 2.1624 -1.2117 5 6 2.3517 3.6349 -0.7483 6 1 1.3769 4.1134 -0.8437 7 6 3.4017 4.3995 -1.5125 8 8 3.9841 3.8718 -2.4362 9 7 3.6937 5.6697 -1.1694 10 6 4.7148 6.4128 -1.9118 11 1 5.4338 5.7629 -2.4105 12 6 4.1381 7.5081 -2.8243 13 6 5.3197 8.3879 -2.3832 14 1 5.0482 9.4294 -2.2113 15 7 6.5083 8.2402 -3.2267 16 6 6.8656 9.2429 -4.0881 17 1 6.2708 10.1425 -4.1460 18 6 7.9916 9.1027 -4.8877 19 7 8.7162 8.0061 -4.8175 20 14 8.4785 10.4702 -6.0633 21 1 9.3921 11.4152 -5.3722 22 1 9.1685 9.8874 -7.2420 23 1 7.2620 11.1953 -6.5102 24 6 5.3669 7.5436 -1.0987 25 6 2.7501 3.4822 0.7379 26 6 2.2716 2.0962 1.1098 27 8 2.1356 1.6894 2.2442 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.4919 2.0269 -1.9378 34 1 3.2488 1.8647 -1.6436 35 1 3.2277 6.0919 -0.4307 36 1 3.1683 7.8832 -2.4970 37 1 4.1569 7.2507 -3.8833 38 1 7.0423 7.4320 -3.1749 39 1 9.5028 7.9080 -5.3765 40 1 6.3786 7.3136 -0.7644 41 1 4.7332 7.9284 -0.2998 42 1 3.8316 3.5560 0.8524 43 1 2.2508 4.2364 1.3461 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020209839.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:37:00 Heat of formation + Delta-G solvation = -63.824460 kcal Electronic energy + Delta-G solvation = -23495.451051 eV Core-core repulsion = 19961.364153 eV Total energy + Delta-G solvation = -3534.086897 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.92038 -40.73110 -39.36227 -37.41113 -35.72506 -35.00236 -34.07691 -31.71369 -30.63129 -28.75200 -26.52215 -26.42943 -25.30885 -24.16695 -23.40349 -21.31774 -20.45635 -20.13194 -19.33288 -18.46393 -17.98136 -17.36672 -16.91311 -16.64368 -16.24964 -16.02515 -15.68420 -15.22252 -15.04820 -14.87461 -14.69782 -14.43473 -14.21760 -14.09446 -13.57429 -13.32932 -13.27576 -13.22621 -12.87355 -12.80038 -12.61560 -12.50333 -12.37898 -12.16306 -12.02299 -11.79740 -11.68953 -11.30544 -11.11679 -10.87524 -10.69343 -9.95335 -9.79186 -9.01067 -7.94996 -5.24251 1.46166 1.48151 1.49971 1.58140 1.58340 1.87208 2.25632 2.56210 3.16853 3.32201 3.37444 3.68524 3.76529 3.85340 3.89112 3.94701 4.09595 4.19095 4.24070 4.34525 4.39442 4.46294 4.54806 4.59718 4.74982 4.82730 4.85402 4.88400 4.93038 4.93994 5.05620 5.19884 5.26180 5.29459 5.36093 5.52029 5.52775 5.73030 6.03291 6.27950 6.61536 7.05747 7.30359 7.32504 8.09820 8.30136 9.28567 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.036896 B = 0.002551 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.707292 B =10971.493632 C =11250.932187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.112 3.888 3 N -0.616 5.616 4 C 0.116 3.884 5 C -0.106 4.106 6 H 0.155 0.845 7 C 0.521 3.479 8 O -0.583 6.583 9 N -0.695 5.695 10 C 0.132 3.868 11 H 0.071 0.929 12 C -0.169 4.169 13 C 0.147 3.853 14 H 0.076 0.924 15 N -0.724 5.724 16 C -0.241 4.241 17 H 0.082 0.918 18 C -0.080 4.080 19 N -0.972 5.972 20 Si 0.975 3.025 21 H -0.286 1.286 22 H -0.299 1.299 23 H -0.267 1.267 24 C -0.139 4.139 25 C -0.138 4.138 26 C 0.511 3.489 27 O -0.576 6.576 28 H 0.042 0.958 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.069 0.931 33 H 0.106 0.894 34 H 0.072 0.928 35 H 0.420 0.580 36 H 0.108 0.892 37 H 0.034 0.966 38 H 0.371 0.629 39 H 0.250 0.750 40 H 0.058 0.942 41 H 0.127 0.873 42 H 0.107 0.893 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.794 -10.335 11.856 25.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.009 4.009 3 N -0.349 5.349 4 C -0.007 4.007 5 C -0.128 4.128 6 H 0.173 0.827 7 C 0.307 3.693 8 O -0.462 6.462 9 N -0.346 5.346 10 C 0.027 3.973 11 H 0.089 0.911 12 C -0.211 4.211 13 C 0.036 3.964 14 H 0.095 0.905 15 N -0.361 5.361 16 C -0.373 4.373 17 H 0.100 0.900 18 C -0.272 4.272 19 N -0.623 5.623 20 Si 0.804 3.196 21 H -0.213 1.213 22 H -0.226 1.226 23 H -0.192 1.192 24 C -0.179 4.179 25 C -0.178 4.178 26 C 0.300 3.700 27 O -0.456 6.456 28 H 0.061 0.939 29 H 0.086 0.914 30 H 0.102 0.898 31 H 0.117 0.883 32 H 0.088 0.912 33 H 0.124 0.876 34 H 0.090 0.910 35 H 0.258 0.742 36 H 0.127 0.873 37 H 0.053 0.947 38 H 0.203 0.797 39 H 0.059 0.941 40 H 0.077 0.923 41 H 0.145 0.855 42 H 0.125 0.875 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -19.473 -10.827 11.677 25.155 hybrid contribution 0.863 0.220 -0.702 1.134 sum -18.609 -10.608 10.975 24.068 Atomic orbital electron populations 1.22091 0.94487 1.03371 1.02014 1.21541 0.95366 0.80328 1.03630 1.48527 1.64746 1.14514 1.07106 1.22017 1.03420 0.88451 0.86839 1.22205 1.00517 0.95838 0.94224 0.82729 1.20657 0.83082 0.82104 0.83428 1.90759 1.53843 1.69583 1.32041 1.45822 1.39999 1.12934 1.35873 1.22179 0.90325 0.90832 0.94004 0.91089 1.24160 1.00529 0.97834 0.98561 1.21277 0.86822 0.97377 0.90892 0.90548 1.42400 1.28429 1.19646 1.45674 1.19710 1.06647 0.97305 1.13618 0.89997 1.25627 0.98718 1.00022 1.02810 1.69836 1.19285 1.28679 1.44479 0.85115 0.78094 0.78393 0.78008 1.21252 1.22622 1.19186 1.23749 1.01170 0.95058 0.97884 1.22373 1.04588 0.95623 0.95187 1.21241 0.75941 0.88756 0.84045 1.90709 1.55620 1.76610 1.22709 0.93910 0.91411 0.89800 0.88334 0.91219 0.87613 0.90967 0.74162 0.87347 0.94690 0.79689 0.94096 0.92289 0.85478 0.87511 0.84150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 10.24 71.98 0.74 -1.07 16 2 C 0.11 1.57 6.65 86.38 0.57 2.14 16 3 N -0.62 -10.35 2.93 -817.99 -2.40 -12.75 16 4 C 0.12 1.74 6.66 86.83 0.58 2.32 16 5 C -0.11 -1.37 3.54 -10.48 -0.04 -1.41 16 6 H 0.16 0.97 8.14 -2.38 -0.02 0.95 16 7 C 0.52 11.38 7.07 87.66 0.62 12.00 16 8 O -0.58 -19.31 15.17 -3.04 -0.05 -19.36 16 9 N -0.70 -13.42 5.30 -440.04 -2.33 -15.75 16 10 C 0.13 3.83 4.12 45.52 0.19 4.01 16 11 H 0.07 2.75 7.47 -2.39 -0.02 2.73 16 12 C -0.17 -5.26 7.68 31.12 0.24 -5.02 16 13 C 0.15 5.28 4.56 45.52 0.21 5.48 16 14 H 0.08 2.61 8.10 -2.39 -0.02 2.59 16 15 N -0.72 -35.84 5.31 -320.45 -1.70 -37.55 16 16 C -0.24 -13.19 9.97 84.03 0.84 -12.35 16 17 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 18 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 19 N -0.97 -60.26 13.06 21.65 0.28 -59.98 16 20 Si 0.97 46.00 29.55 68.60 2.03 48.03 16 21 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 22 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 23 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 24 C -0.14 -3.75 7.58 31.12 0.24 -3.51 16 25 C -0.14 -1.81 6.37 30.58 0.19 -1.61 16 26 C 0.51 10.42 8.02 87.89 0.71 11.13 16 27 O -0.58 -16.53 17.59 -3.04 -0.05 -16.58 16 28 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.07 1.16 7.92 -2.39 -0.02 1.14 16 33 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.07 1.45 7.06 -2.39 -0.02 1.43 16 35 H 0.42 4.45 8.73 -92.70 -0.81 3.64 16 36 H 0.11 2.53 8.14 -2.38 -0.02 2.51 16 37 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.37 20.23 7.90 -92.71 -0.73 19.49 16 39 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 40 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.13 2.25 8.12 -2.39 -0.02 2.23 16 42 H 0.11 1.56 7.89 -2.38 -0.02 1.54 16 43 H 0.14 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -79.00 358.94 0.80 -78.20 By element: Atomic # 1 Polarization: 28.25 SS G_CDS: -0.52 Total: 27.73 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: 5.55 Total: 8.01 kcal Atomic # 7 Polarization: -119.88 SS G_CDS: -6.15 Total: -126.03 kcal Atomic # 8 Polarization: -35.84 SS G_CDS: -0.10 Total: -35.94 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -79.00 0.80 -78.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020209839.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.372 kcal (2) G-P(sol) polarization free energy of solvation -79.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds