Wall clock time and date at job start Tue Mar 31 2020 04:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.29645 * 2 1 4 4 C 1.52901 * 109.14318 * 119.46781 * 2 1 3 5 5 C 1.53347 * 108.68510 * 170.94074 * 4 2 1 6 6 H 1.08992 * 109.70312 * 52.23617 * 5 4 2 7 7 C 1.50702 * 109.67409 * 172.75207 * 5 4 2 8 8 O 1.21282 * 119.99581 * 358.96422 * 7 5 4 9 9 N 1.34774 * 120.00264 * 178.96750 * 7 5 4 10 10 C 1.46496 * 120.00225 * 179.97438 * 9 7 5 11 11 H 1.09007 * 112.84752 * 336.19727 * 10 9 7 12 12 C 1.53775 * 113.69070 * 107.46653 * 10 9 7 13 13 C 1.53784 * 87.08265 * 139.99581 * 12 10 9 14 14 H 1.08994 * 113.69066 * 89.12475 * 13 12 10 15 15 N 1.46499 * 113.61002 * 220.02083 * 13 12 10 16 16 C 1.36935 * 119.99926 * 252.49368 * 15 13 12 17 17 H 1.08005 * 119.99877 * 359.97438 * 16 15 13 18 18 C 1.38811 * 120.00369 * 179.73019 * 16 15 13 19 19 N 1.31617 * 119.99773 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00451 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47154 * 89.99247 * 20 18 16 22 22 H 1.48496 * 109.47375 * 209.99772 * 20 18 16 23 23 H 1.48502 * 109.46736 * 329.99467 * 20 18 16 24 24 C 1.53777 * 87.07743 * 334.56448 * 13 12 10 25 25 C 1.53072 * 108.42489 * 292.48226 * 5 4 2 26 26 C 1.50174 * 109.88838 * 48.90436 * 25 5 4 27 27 O 1.21284 * 118.24573 * 162.39861 * 26 25 5 28 28 N 1.33351 * 123.51217 * 342.40838 * 26 25 5 29 29 H 1.09004 * 109.46844 * 179.57994 * 1 2 3 30 30 H 1.08994 * 109.47127 * 299.57999 * 1 2 3 31 31 H 1.09001 * 109.47199 * 59.58733 * 1 2 3 32 32 H 1.09001 * 109.58230 * 51.19205 * 4 2 1 33 33 H 1.09001 * 109.61217 * 290.70795 * 4 2 1 34 34 H 0.96996 * 119.99931 * 0.02562 * 9 7 5 35 35 H 1.08997 * 113.61959 * 25.44153 * 12 10 9 36 36 H 1.09002 * 113.61358 * 254.54042 * 12 10 9 37 37 H 0.97005 * 120.00261 * 72.49492 * 15 13 12 38 38 H 0.97004 * 120.00382 * 180.02562 * 19 18 16 39 39 H 1.09003 * 113.61102 * 139.98204 * 24 13 12 40 40 H 1.09003 * 113.61896 * 270.80213 * 24 13 12 41 41 H 1.09004 * 109.40001 * 169.02974 * 25 5 4 42 42 H 1.08992 * 109.40263 * 288.77026 * 25 5 4 43 43 H 0.96999 * 117.95135 * 182.22307 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8902 1.0288 0.0000 4 6 2.0314 -0.7106 1.2576 5 6 3.5477 -0.9066 1.1396 6 1 4.0243 0.0456 0.9069 7 6 4.0926 -1.4427 2.4383 8 8 3.3476 -1.6317 3.3765 9 7 5.4078 -1.7121 2.5573 10 6 5.9375 -2.2328 3.8200 11 1 5.3128 -1.9808 4.6771 12 6 6.3304 -3.7183 3.7595 13 6 7.5559 -3.3478 4.6115 14 1 7.3751 -3.4005 5.6851 15 7 8.7826 -4.0387 4.2065 16 6 9.2953 -5.0388 4.9889 17 1 8.7955 -5.3179 5.9048 18 6 10.4545 -5.6974 4.6025 19 7 11.0606 -5.3609 3.4837 20 14 11.1535 -7.0621 5.6694 21 1 10.5716 -8.3633 5.2528 22 1 12.6294 -7.1068 5.5121 23 1 10.8149 -6.8011 7.0915 24 6 7.4295 -1.9280 4.0345 25 6 3.8200 -1.9078 0.0141 26 6 3.0473 -1.5190 -1.2135 27 8 3.3833 -1.9943 -2.2776 28 7 2.0117 -0.6791 -1.1964 29 1 -0.3633 -1.0277 -0.0075 30 1 -0.3633 0.5073 0.8937 31 1 -0.3634 0.5202 -0.8863 32 1 1.5432 -1.6809 1.3481 33 1 1.8084 -0.1030 2.1346 34 1 6.0037 -1.5606 1.8072 35 1 6.5836 -4.0625 2.7568 36 1 5.6273 -4.3770 4.2693 37 1 9.2317 -3.7878 3.3842 38 1 11.8705 -5.8213 3.2133 39 1 7.6137 -1.1414 4.7662 40 1 7.9844 -1.7823 3.1076 41 1 4.8855 -1.9136 -0.2154 42 1 3.5144 -2.9040 0.3340 43 1 1.5500 -0.5095 -2.0324 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022343805.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:17:51 Heat of formation + Delta-G solvation = -55.151265 kcal Electronic energy + Delta-G solvation = -23584.040291 eV Core-core repulsion = 20050.329492 eV Total energy + Delta-G solvation = -3533.710799 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.03200 -39.71129 -38.13489 -36.97719 -34.24127 -33.76100 -32.53206 -31.45592 -29.87138 -27.60043 -25.50983 -25.15989 -24.05715 -22.71524 -21.92930 -20.44911 -19.61480 -19.25157 -17.67554 -17.22309 -17.04725 -16.55047 -16.20794 -15.55076 -15.10274 -14.97387 -14.65495 -14.48200 -13.98770 -13.76406 -13.60361 -13.17818 -13.06094 -12.91620 -12.62371 -12.17505 -11.97915 -11.95584 -11.81595 -11.46279 -11.37746 -11.27049 -10.94625 -10.70736 -10.52559 -10.41663 -10.30540 -10.06494 -9.72648 -9.55222 -9.46815 -8.93830 -8.81572 -7.00876 -5.81941 -3.11031 2.33099 2.51943 2.89195 3.11616 3.41663 3.47146 3.48479 4.06713 4.21185 4.22746 4.35412 4.56857 4.68468 4.74541 4.75425 4.94829 5.04710 5.17610 5.20055 5.21762 5.31394 5.34515 5.44877 5.45338 5.54699 5.63254 5.79731 5.83226 5.91178 6.07925 6.21784 6.27309 6.41602 6.44416 6.57594 6.70194 6.97205 7.02057 7.53270 7.66997 7.88668 8.17597 8.36450 9.47866 10.04206 10.38584 11.40401 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.028055 B = 0.002712 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.796714 B =10323.621138 C =10937.666973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.135 3.865 3 H 0.078 0.922 4 C -0.112 4.112 5 C -0.113 4.113 6 H 0.105 0.895 7 C 0.518 3.482 8 O -0.541 6.541 9 N -0.711 5.711 10 C 0.116 3.884 11 H 0.109 0.891 12 C -0.176 4.176 13 C 0.169 3.831 14 H 0.080 0.920 15 N -0.710 5.710 16 C -0.245 4.245 17 H 0.072 0.928 18 C -0.012 4.012 19 N -0.933 5.933 20 Si 0.908 3.092 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C -0.159 4.159 25 C -0.128 4.128 26 C 0.525 3.475 27 O -0.554 6.554 28 N -0.717 5.717 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.400 0.600 35 H 0.080 0.920 36 H 0.059 0.941 37 H 0.385 0.615 38 H 0.256 0.744 39 H 0.066 0.934 40 H 0.082 0.918 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.977 14.642 -6.742 25.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.030 3.970 3 H 0.096 0.904 4 C -0.150 4.150 5 C -0.135 4.135 6 H 0.123 0.877 7 C 0.303 3.697 8 O -0.418 6.418 9 N -0.360 5.360 10 C 0.012 3.988 11 H 0.127 0.873 12 C -0.219 4.219 13 C 0.056 3.944 14 H 0.098 0.902 15 N -0.348 5.348 16 C -0.376 4.376 17 H 0.090 0.910 18 C -0.209 4.209 19 N -0.581 5.581 20 Si 0.739 3.261 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.207 1.207 24 C -0.199 4.199 25 C -0.168 4.168 26 C 0.312 3.688 27 O -0.432 6.432 28 N -0.370 5.370 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.114 0.886 34 H 0.234 0.766 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.219 0.781 38 H 0.066 0.934 39 H 0.085 0.915 40 H 0.101 0.899 41 H 0.127 0.873 42 H 0.126 0.874 43 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -20.106 14.064 -6.239 25.317 hybrid contribution 0.661 -0.527 -0.443 0.955 sum -19.444 13.537 -6.682 24.617 Atomic orbital electron populations 1.22162 0.93863 1.03203 1.03028 1.21035 0.94949 0.96242 0.84733 0.90403 1.21795 0.93051 1.02912 0.97238 1.21482 0.98098 1.00515 0.93364 0.87690 1.20323 0.82572 0.77666 0.89108 1.90701 1.57601 1.52885 1.40609 1.46090 1.08233 1.65519 1.16201 1.22523 0.94274 0.95761 0.86258 0.87267 1.24339 1.00661 0.94344 1.02526 1.21343 0.86974 0.89589 0.96490 0.90230 1.42357 1.25242 1.40403 1.26794 1.19307 1.05553 1.09790 1.02963 0.90994 1.24770 0.98208 1.00198 0.97677 1.69654 1.20792 1.44295 1.23309 0.86176 0.78166 0.82074 0.79697 1.21656 1.21748 1.20680 1.23869 0.93812 1.00330 1.01884 1.21670 1.02409 1.00937 0.91803 1.20008 0.80104 0.77968 0.90740 1.90796 1.67270 1.53666 1.31440 1.45680 1.32762 1.46394 1.12159 0.91680 0.90587 0.91922 0.90033 0.88575 0.76554 0.90148 0.92248 0.78077 0.93415 0.91503 0.89935 0.87307 0.87401 0.76562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.66 9.39 37.16 0.35 -0.31 16 2 C 0.14 0.71 3.68 -68.38 -0.25 0.46 16 3 H 0.08 0.32 8.14 -51.92 -0.42 -0.10 16 4 C -0.11 -0.79 3.99 -26.60 -0.11 -0.89 16 5 C -0.11 -0.89 2.60 -91.55 -0.24 -1.13 16 6 H 0.11 0.65 8.13 -51.93 -0.42 0.22 16 7 C 0.52 5.95 7.14 -10.99 -0.08 5.87 16 8 O -0.54 -8.16 15.49 5.56 0.09 -8.07 16 9 N -0.71 -8.11 5.27 -53.02 -0.28 -8.39 16 10 C 0.12 1.63 4.24 -67.12 -0.28 1.34 16 11 H 0.11 1.60 7.47 -51.92 -0.39 1.21 16 12 C -0.18 -2.97 7.68 -25.92 -0.20 -3.17 16 13 C 0.17 3.19 4.48 -67.12 -0.30 2.89 16 14 H 0.08 1.50 8.10 -51.93 -0.42 1.08 16 15 N -0.71 -17.25 5.40 -52.64 -0.28 -17.53 16 16 C -0.24 -6.69 9.97 -15.06 -0.15 -6.84 16 17 H 0.07 1.91 7.83 -52.48 -0.41 1.49 16 18 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 19 N -0.93 -27.78 13.06 55.49 0.72 -27.05 16 20 Si 0.91 22.18 29.55 -169.99 -5.02 17.15 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 C -0.16 -2.38 7.58 -25.92 -0.20 -2.58 16 25 C -0.13 -1.12 5.18 -28.10 -0.15 -1.27 16 26 C 0.52 5.38 7.71 -11.87 -0.09 5.28 16 27 O -0.55 -8.11 17.78 5.55 0.10 -8.01 16 28 N -0.72 -5.16 5.12 -54.86 -0.28 -5.44 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 33 H 0.10 0.68 7.89 -51.93 -0.41 0.27 16 34 H 0.40 3.75 8.42 -40.82 -0.34 3.41 16 35 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.39 9.87 7.92 -40.82 -0.32 9.55 16 38 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 39 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.08 1.22 8.10 -51.93 -0.42 0.80 16 41 H 0.11 0.89 7.92 -51.93 -0.41 0.48 16 42 H 0.11 1.01 8.09 -51.93 -0.42 0.59 16 43 H 0.40 2.54 8.67 -40.82 -0.35 2.19 16 LS Contribution 354.06 15.07 5.34 5.34 Total: -1.00 -34.12 354.06 -8.25 -42.37 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -6.84 Total: 10.42 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -1.79 Total: -0.80 kcal Atomic # 7 Polarization: -58.29 SS G_CDS: -0.12 Total: -58.41 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: 0.18 Total: -16.08 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.12 -8.25 -42.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022343805.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.777 kcal (2) G-P(sol) polarization free energy of solvation -34.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds