Wall clock time and date at job start Tue Mar 31 2020 04:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.88495 * 2 1 4 4 C 1.55163 * 110.99848 * 236.12505 * 2 1 3 5 5 C 1.54323 * 102.93929 * 206.38588 * 4 2 1 6 6 N 1.47027 * 107.27098 * 22.19002 * 5 4 2 7 7 C 1.34777 * 125.64614 * 181.01898 * 6 5 4 8 8 O 1.21343 * 120.00084 * 180.02562 * 7 6 5 9 9 C 1.49454 * 120.00164 * 0.03357 * 7 6 5 10 10 O 1.21353 * 119.99759 * 359.97438 * 9 7 6 11 11 N 1.34773 * 120.00135 * 180.27489 * 9 7 6 12 12 C 1.46500 * 120.00432 * 179.72278 * 11 9 7 13 13 H 1.09000 * 112.84397 * 25.33013 * 12 11 9 14 14 C 1.53779 * 113.61678 * 156.52341 * 12 11 9 15 15 C 1.53781 * 87.07868 * 139.98176 * 14 12 11 16 16 H 1.09004 * 113.61249 * 89.11944 * 15 14 12 17 17 N 1.46496 * 113.61558 * 219.93636 * 15 14 12 18 18 C 1.36941 * 120.00078 * 205.00609 * 17 15 14 19 19 H 1.07997 * 120.00080 * 359.97438 * 18 17 15 20 20 C 1.38814 * 119.99977 * 180.02562 * 18 17 15 21 21 N 1.31619 * 119.99887 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 120.00003 * 359.97438 * 20 18 17 23 23 H 1.48506 * 109.46763 * 90.00505 * 22 20 18 24 24 H 1.48501 * 109.47000 * 210.00271 * 22 20 18 25 25 H 1.48494 * 109.47416 * 330.00720 * 22 20 18 26 26 C 1.53777 * 113.61440 * 254.13757 * 12 11 9 27 27 C 1.47415 * 108.70443 * 1.28922 * 6 5 4 28 28 H 1.08995 * 109.47478 * 183.87634 * 1 2 3 29 29 H 1.09003 * 109.46640 * 303.87967 * 1 2 3 30 30 H 1.09001 * 109.47405 * 63.87081 * 1 2 3 31 31 H 1.09002 * 110.71815 * 88.02222 * 4 2 1 32 32 H 1.08997 * 110.72005 * 324.74434 * 4 2 1 33 33 H 1.09004 * 109.88073 * 262.77569 * 5 4 2 34 34 H 1.08998 * 110.01192 * 141.68154 * 5 4 2 35 35 H 0.97001 * 120.00114 * 359.71542 * 11 9 7 36 36 H 1.08996 * 113.61868 * 254.52992 * 14 12 11 37 37 H 1.08997 * 113.61012 * 25.43720 * 14 12 11 38 38 H 0.96998 * 119.99860 * 24.99838 * 17 15 14 39 39 H 0.96994 * 119.99855 * 179.97438 * 21 20 18 40 40 H 1.08998 * 113.61249 * 334.55923 * 26 12 11 41 41 H 1.08997 * 113.61453 * 105.46590 * 26 12 11 42 42 H 1.09000 * 110.36943 * 94.47559 * 27 6 5 43 43 H 1.08999 * 110.37057 * 216.80436 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0860 -0.8074 -1.2027 5 6 3.4677 -1.2731 -0.6971 6 7 3.4280 -1.2423 0.7723 7 6 4.4490 -1.5605 1.5925 8 8 4.3026 -1.4992 2.7955 9 6 5.7616 -1.9889 1.0203 10 8 5.9078 -2.0505 -0.1828 11 7 6.7808 -2.3125 1.8406 12 6 8.0656 -2.7382 1.2799 13 1 8.2369 -2.3532 0.2746 14 6 9.2542 -2.5251 2.2320 15 6 9.7851 -3.8844 1.7468 16 1 10.4272 -3.8141 0.8688 17 7 10.3680 -4.7015 2.8138 18 6 11.3069 -5.6519 2.5132 19 1 11.6175 -5.7993 1.4894 20 6 11.8588 -6.4266 3.5242 21 7 12.7610 -7.3404 3.2352 22 14 11.3212 -6.1722 5.2950 23 1 10.1631 -7.0531 5.5920 24 1 12.4447 -6.5073 6.2064 25 1 10.9282 -4.7541 5.4942 26 6 8.3265 -4.2477 1.4143 27 6 2.0845 -0.8119 1.1999 28 1 -0.3634 -1.0252 0.0695 29 1 -0.3633 0.5729 0.8532 30 1 -0.3634 0.4526 -0.9226 31 1 2.1914 -0.1691 -2.0800 32 1 1.4470 -1.6629 -1.4213 33 1 4.2424 -0.5982 -1.0612 34 1 3.6684 -2.2876 -1.0414 35 1 6.6638 -2.2634 2.8022 36 1 9.8900 -1.6841 1.9554 37 1 8.9738 -2.5167 3.2852 38 1 10.0889 -4.5694 3.7334 39 1 13.1468 -7.8814 3.9417 40 1 7.7920 -4.7110 2.2436 41 1 8.2143 -4.7952 0.4785 42 1 1.4537 -1.6784 1.3984 43 1 2.1524 -0.1803 2.0857 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022952432.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:06:53 Heat of formation + Delta-G solvation = -55.591912 kcal Electronic energy + Delta-G solvation = -23433.200647 eV Core-core repulsion = 19899.470740 eV Total energy + Delta-G solvation = -3533.729907 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.96264 -40.55279 -39.25370 -38.77352 -35.95984 -34.45643 -33.84720 -32.44823 -30.66104 -28.42798 -26.72546 -26.58548 -25.32227 -23.92762 -22.64730 -21.49356 -21.30699 -20.74758 -19.49796 -18.71969 -18.24297 -17.50211 -17.36242 -16.61129 -16.44702 -16.07036 -15.74056 -15.33152 -14.90199 -14.75898 -14.71502 -14.39025 -14.17023 -13.81337 -13.65470 -13.60168 -13.43021 -13.36974 -12.92684 -12.81287 -12.69479 -12.33863 -12.06157 -11.99636 -11.93324 -11.81799 -11.69352 -11.63953 -11.55940 -10.93019 -10.65461 -10.22931 -9.89314 -9.29797 -8.02828 -5.36538 0.26207 1.18295 1.38094 1.41522 1.48652 2.04122 2.39972 2.48156 3.19896 3.26617 3.54549 3.56294 3.60542 3.72381 3.76764 3.89825 4.07228 4.21465 4.25643 4.34962 4.55345 4.57458 4.63747 4.76630 4.81883 4.82269 4.83587 4.92867 4.96796 5.01653 5.09787 5.11322 5.17227 5.20588 5.30292 5.45180 5.50035 5.77233 5.96332 6.17719 6.22399 6.57765 6.87115 7.07004 7.83179 8.02028 9.18462 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.037412 B = 0.002605 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.240169 B =10746.193216 C =11122.940243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.097 4.097 3 H 0.090 0.910 4 C -0.123 4.123 5 C 0.102 3.898 6 N -0.591 5.591 7 C 0.516 3.484 8 O -0.549 6.549 9 C 0.508 3.492 10 O -0.534 6.534 11 N -0.678 5.678 12 C 0.134 3.866 13 H 0.121 0.879 14 C -0.142 4.142 15 C 0.155 3.845 16 H 0.084 0.916 17 N -0.738 5.738 18 C -0.234 4.234 19 H 0.059 0.941 20 C -0.067 4.067 21 N -0.984 5.984 22 Si 0.955 3.045 23 H -0.281 1.281 24 H -0.297 1.297 25 H -0.248 1.248 26 C -0.172 4.172 27 C 0.099 3.901 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.103 0.897 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.417 0.583 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.367 0.633 39 H 0.257 0.743 40 H 0.075 0.925 41 H 0.061 0.939 42 H 0.080 0.920 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.788 19.071 -7.448 33.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.116 4.116 3 H 0.108 0.892 4 C -0.160 4.160 5 C -0.020 4.020 6 N -0.324 5.324 7 C 0.299 3.701 8 O -0.428 6.428 9 C 0.288 3.712 10 O -0.412 6.412 11 N -0.329 5.329 12 C 0.029 3.971 13 H 0.139 0.861 14 C -0.181 4.181 15 C 0.045 3.955 16 H 0.102 0.898 17 N -0.379 5.379 18 C -0.365 4.365 19 H 0.077 0.923 20 C -0.258 4.258 21 N -0.634 5.634 22 Si 0.783 3.217 23 H -0.208 1.208 24 H -0.224 1.224 25 H -0.172 1.172 26 C -0.214 4.214 27 C -0.022 4.022 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.122 0.878 32 H 0.107 0.893 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.254 0.746 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.201 0.799 39 H 0.066 0.934 40 H 0.094 0.906 41 H 0.079 0.921 42 H 0.099 0.901 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -26.525 18.913 -7.753 33.487 hybrid contribution 0.307 -0.631 1.561 1.711 sum -26.217 18.283 -6.192 32.557 Atomic orbital electron populations 1.21685 0.91900 1.02775 1.03146 1.22412 0.97483 0.99027 0.92719 0.89205 1.22840 0.93556 1.01077 0.98572 1.22338 0.99791 1.02544 0.77354 1.48444 1.11922 1.63230 1.08813 1.19903 0.85046 0.79155 0.86008 1.90749 1.83296 1.53793 1.14917 1.20099 0.85446 0.78734 0.86886 1.90732 1.82941 1.52757 1.14724 1.45796 1.11438 1.64670 1.11017 1.22411 0.80748 0.94859 0.99085 0.86133 1.23733 0.95767 0.98633 0.99964 1.21656 0.91635 0.90346 0.91825 0.89827 1.42674 1.47960 1.41798 1.05503 1.19113 1.13486 1.09684 0.94218 0.92283 1.25546 0.99336 0.98452 1.02463 1.69886 1.33411 1.26672 1.33415 0.85405 0.77115 0.79098 0.80128 1.20777 1.22378 1.17192 1.24225 0.99661 0.95831 1.01689 1.22745 0.80968 0.99286 0.99209 0.91980 0.91850 0.90690 0.87848 0.89290 0.90839 0.91270 0.74600 0.88870 0.88930 0.79890 0.93379 0.90595 0.92058 0.90135 0.90608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.72 9.31 71.98 0.67 -0.05 16 2 C -0.10 -0.84 3.65 -9.32 -0.03 -0.88 16 3 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 4 C -0.12 -1.06 6.42 31.78 0.20 -0.86 16 5 C 0.10 1.64 5.49 86.73 0.48 2.12 16 6 N -0.59 -11.88 3.32 -812.95 -2.70 -14.58 16 7 C 0.52 13.17 7.91 87.27 0.69 13.86 16 8 O -0.55 -16.20 16.73 -3.23 -0.05 -16.25 16 9 C 0.51 13.41 7.86 87.27 0.69 14.10 16 10 O -0.53 -15.47 13.74 -3.26 -0.04 -15.51 16 11 N -0.68 -16.81 5.35 -441.37 -2.36 -19.18 16 12 C 0.13 3.48 4.21 45.52 0.19 3.67 16 13 H 0.12 3.11 7.50 -2.39 -0.02 3.09 16 14 C -0.14 -3.75 7.58 31.12 0.24 -3.51 16 15 C 0.16 5.51 4.48 45.58 0.20 5.72 16 16 H 0.08 3.06 8.10 -2.38 -0.02 3.04 16 17 N -0.74 -33.35 5.21 -320.16 -1.67 -35.02 16 18 C -0.23 -13.18 10.45 84.03 0.88 -12.31 16 19 H 0.06 3.64 8.06 -2.91 -0.02 3.62 16 20 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 21 N -0.98 -63.16 13.97 21.65 0.30 -62.85 16 22 Si 0.96 45.24 27.74 68.60 1.90 47.14 16 23 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 24 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 25 H -0.25 -10.40 6.52 99.48 0.65 -9.75 16 26 C -0.17 -5.48 7.70 31.18 0.24 -5.24 16 27 C 0.10 1.45 6.38 86.93 0.55 2.00 16 28 H 0.06 0.32 8.07 -2.39 -0.02 0.30 16 29 H 0.06 0.31 8.14 -2.39 -0.02 0.30 16 30 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.09 0.63 8.04 -2.39 -0.02 0.62 16 33 H 0.07 1.30 7.58 -2.39 -0.02 1.28 16 34 H 0.07 1.28 7.69 -2.39 -0.02 1.26 16 35 H 0.42 9.57 8.18 -92.71 -0.76 8.81 16 36 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.09 2.34 8.09 -2.39 -0.02 2.32 16 38 H 0.37 15.82 5.79 -92.71 -0.54 15.29 16 39 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 40 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 41 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.08 1.09 7.99 -2.39 -0.02 1.07 16 43 H 0.08 1.22 8.03 -2.39 -0.02 1.20 16 Total: -1.00 -72.02 352.16 0.50 -71.51 By element: Atomic # 1 Polarization: 29.89 SS G_CDS: -0.33 Total: 29.56 kcal Atomic # 6 Polarization: 9.71 SS G_CDS: 5.46 Total: 15.18 kcal Atomic # 7 Polarization: -125.19 SS G_CDS: -6.43 Total: -131.62 kcal Atomic # 8 Polarization: -31.67 SS G_CDS: -0.10 Total: -31.76 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.90 Total: 47.14 kcal Total: -72.02 0.50 -71.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022952432.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.921 kcal (2) G-P(sol) polarization free energy of solvation -72.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds