Wall clock time and date at job start Tue Mar 31 2020 04:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.46899 * 2 1 4 4 C 1.50696 * 109.47506 * 119.99496 * 2 1 3 5 5 O 1.21286 * 119.99875 * 120.00275 * 4 2 1 6 6 N 1.34775 * 120.00329 * 300.00498 * 4 2 1 7 7 C 1.46499 * 120.00123 * 179.97438 * 6 4 2 8 8 C 1.53499 * 114.20527 * 205.00082 * 7 6 4 9 9 N 1.47066 * 87.98642 * 220.14732 * 8 7 6 10 10 C 1.36935 * 136.05905 * 207.08539 * 9 8 7 11 11 H 1.07996 * 120.00461 * 6.76058 * 10 9 8 12 12 C 1.38816 * 119.99877 * 186.76278 * 10 9 8 13 13 N 1.31618 * 119.99884 * 172.25761 * 12 10 9 14 14 Si 1.86798 * 120.00153 * 352.25282 * 12 10 9 15 15 H 1.48497 * 109.47359 * 175.36223 * 14 12 10 16 16 H 1.48503 * 109.47030 * 295.36478 * 14 12 10 17 17 H 1.48505 * 109.46945 * 55.36328 * 14 12 10 18 18 C 1.47070 * 87.88468 * 27.34150 * 9 8 7 19 19 N 1.46497 * 109.47346 * 239.99871 * 2 1 3 20 20 C 1.45758 * 117.94636 * 119.73498 * 19 2 1 21 21 C 1.53104 * 110.38772 * 160.74517 * 20 19 2 22 22 C 1.53344 * 108.52254 * 51.11312 * 21 20 19 23 23 C 1.53068 * 108.42701 * 292.30880 * 22 21 20 24 24 C 1.33346 * 117.94754 * 300.00167 * 19 2 1 25 25 O 1.21283 * 118.24716 * 2.23489 * 24 19 2 26 26 H 1.08997 * 109.47609 * 60.00539 * 1 2 3 27 27 H 1.09005 * 109.46732 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47485 * 299.99929 * 1 2 3 29 29 H 0.97001 * 119.99820 * 359.97438 * 6 4 2 30 30 H 1.08993 * 113.28511 * 338.06582 * 7 6 4 31 31 H 1.09001 * 113.46838 * 105.36625 * 8 7 6 32 32 H 1.09000 * 113.46983 * 334.92687 * 8 7 6 33 33 H 0.97004 * 120.00412 * 4.87236 * 13 12 10 34 34 H 1.09004 * 113.46535 * 87.44030 * 18 9 8 35 35 H 1.08996 * 113.46991 * 217.87726 * 18 9 8 36 36 H 1.09003 * 109.30291 * 281.24234 * 20 19 2 37 37 H 1.08996 * 109.30112 * 40.61233 * 20 19 2 38 38 H 1.08997 * 109.80245 * 291.32604 * 21 20 19 39 39 H 1.08992 * 109.54429 * 170.74670 * 21 20 19 40 40 H 1.09013 * 109.66924 * 172.57671 * 22 21 20 41 41 H 1.08999 * 109.67952 * 52.05047 * 22 21 20 42 42 H 1.09003 * 109.39879 * 288.77500 * 23 22 21 43 43 H 1.09006 * 109.32654 * 168.99328 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.7297 -1.6963 1.1192 6 7 1.7068 -0.2498 2.4546 7 6 2.1948 -0.9407 3.6507 8 6 1.3232 -0.7329 4.8971 9 7 2.5622 -0.6264 5.6821 10 6 2.9315 -0.8657 6.9789 11 1 2.2351 -1.3290 7.6620 12 6 4.2011 -0.5126 7.4154 13 7 4.5058 -0.6004 8.6928 14 14 5.4770 0.0871 6.1899 15 1 6.7034 0.5038 6.9161 16 1 5.8095 -1.0093 5.2451 17 1 4.9322 1.2436 5.4342 18 6 3.2287 -0.1437 4.4632 19 7 2.0183 -0.6906 -1.1961 20 6 2.8481 0.0621 -2.1285 21 6 3.6413 -0.8914 -3.0261 22 6 2.6685 -1.9061 -3.6388 23 6 2.1402 -2.8067 -2.5195 24 6 1.6714 -1.9668 -1.3663 25 8 0.9377 -2.4765 -0.5460 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.1493 0.5390 2.5436 30 1 2.4705 -1.9789 3.4663 31 1 0.7196 -1.6032 5.1547 32 1 0.7441 0.1902 4.8728 33 1 3.8682 -0.9780 9.3188 34 1 3.1518 0.9347 4.3246 35 1 4.2484 -0.5120 4.3511 36 1 2.2121 0.6975 -2.7449 37 1 3.5426 0.6881 -1.5683 38 1 4.3925 -1.4156 -2.4354 39 1 4.1272 -0.3250 -3.8205 40 1 3.1887 -2.5109 -4.3818 41 1 1.8379 -1.3802 -4.1096 42 1 2.9362 -3.4713 -2.1835 43 1 1.3078 -3.4007 -2.8970 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031428927.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:25:53 Heat of formation + Delta-G solvation = -1.771719 kcal Electronic energy + Delta-G solvation = -24686.614828 eV Core-core repulsion = 21155.218739 eV Total energy + Delta-G solvation = -3531.396089 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.10207 -39.38413 -37.85313 -36.57610 -34.79657 -33.69867 -32.17348 -30.73902 -29.67296 -27.67637 -25.36169 -25.05187 -24.54161 -23.12731 -22.06040 -20.32384 -19.83936 -18.58371 -17.49799 -17.32756 -17.13921 -16.17496 -15.85768 -15.49323 -15.27711 -14.72933 -14.42655 -14.20754 -14.04123 -13.89975 -13.58820 -13.47608 -13.14154 -12.57898 -12.44020 -12.17732 -12.16950 -11.92943 -11.80126 -11.55861 -11.38689 -11.31484 -11.31100 -11.24576 -10.54784 -10.35942 -9.75460 -9.55382 -9.52969 -9.20419 -8.87132 -8.78311 -8.47833 -7.17048 -6.33203 -3.24351 2.54967 2.78950 2.84513 3.42496 3.44144 3.48177 3.66759 4.32305 4.37578 4.40159 4.51006 4.59631 4.67535 4.80983 4.87805 4.91226 5.05151 5.12993 5.14056 5.17916 5.36401 5.41808 5.43360 5.50376 5.54369 5.56862 5.61581 5.79580 5.84978 5.93678 6.03749 6.17117 6.26594 6.29035 6.35435 6.49568 7.02744 7.07516 7.35251 7.73923 8.17964 8.23081 8.47983 8.96810 9.48668 10.33644 11.19770 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.026967 B = 0.003666 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.039558 B = 7636.326029 C = 8044.593400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.124 3.876 3 H 0.109 0.891 4 C 0.510 3.490 5 O -0.524 6.524 6 N -0.715 5.715 7 C 0.104 3.896 8 C 0.116 3.884 9 N -0.622 5.622 10 C -0.305 4.305 11 H 0.085 0.915 12 C -0.023 4.023 13 N -0.932 5.932 14 Si 1.072 2.928 15 H -0.294 1.294 16 H -0.292 1.292 17 H -0.288 1.288 18 C 0.087 3.913 19 N -0.592 5.592 20 C 0.115 3.885 21 C -0.137 4.137 22 C -0.123 4.123 23 C -0.133 4.133 24 C 0.526 3.474 25 O -0.534 6.534 26 H 0.063 0.937 27 H 0.090 0.910 28 H 0.069 0.931 29 H 0.397 0.603 30 H 0.120 0.880 31 H 0.051 0.949 32 H 0.040 0.960 33 H 0.261 0.739 34 H 0.046 0.954 35 H 0.053 0.947 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.100 0.900 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.243 4.115 -28.646 29.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.017 3.983 3 H 0.127 0.873 4 C 0.293 3.707 5 O -0.399 6.399 6 N -0.366 5.366 7 C -0.001 4.001 8 C -0.011 4.011 9 N -0.350 5.350 10 C -0.431 4.431 11 H 0.103 0.897 12 C -0.222 4.222 13 N -0.575 5.575 14 Si 0.904 3.096 15 H -0.222 1.222 16 H -0.221 1.221 17 H -0.215 1.215 18 C -0.039 4.039 19 N -0.326 5.326 20 C -0.008 4.008 21 C -0.174 4.174 22 C -0.160 4.160 23 C -0.172 4.172 24 C 0.315 3.685 25 O -0.411 6.411 26 H 0.082 0.918 27 H 0.109 0.891 28 H 0.088 0.912 29 H 0.231 0.769 30 H 0.138 0.862 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.102 0.898 40 H 0.094 0.906 41 H 0.088 0.912 42 H 0.118 0.882 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.489 3.623 -28.165 28.749 hybrid contribution -1.740 -0.026 0.264 1.760 sum -6.229 3.597 -27.901 28.813 Atomic orbital electron populations 1.22195 0.92423 1.05447 1.02350 1.20982 0.96461 0.96357 0.84541 0.87280 1.20656 0.80429 0.84892 0.84679 1.90684 1.37424 1.25450 1.86301 1.45909 1.53504 1.31748 1.05464 1.23435 0.96921 0.98048 0.81732 1.22644 0.91273 0.98891 0.88307 1.45684 1.05802 1.77075 1.06486 1.20119 1.00472 1.39331 0.83170 0.89746 1.25747 0.97326 0.99758 0.99350 1.70925 1.39727 1.45991 1.00813 0.83679 0.75953 0.76256 0.73690 1.22176 1.22053 1.21475 1.23235 0.97152 0.97081 0.86479 1.47058 1.51764 1.11660 1.22141 1.21470 0.93483 0.94251 0.91560 1.21915 0.98361 0.97852 0.99305 1.21660 0.99319 0.97576 0.97477 1.21644 1.03318 0.98377 0.93891 1.19953 0.80245 0.81212 0.87058 1.90677 1.36553 1.69835 1.43991 0.91843 0.89141 0.91244 0.76903 0.86247 0.93066 0.94243 0.92866 0.93623 0.92910 0.91587 0.90707 0.90544 0.89774 0.90617 0.91210 0.88216 0.88476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.64 8.98 37.15 0.33 -1.31 16 2 C 0.12 1.37 3.02 -69.09 -0.21 1.16 16 3 H 0.11 0.86 7.79 -51.93 -0.40 0.45 16 4 C 0.51 7.98 6.41 -10.99 -0.07 7.91 16 5 O -0.52 -10.55 14.15 -15.21 -0.22 -10.76 16 6 N -0.71 -10.67 5.28 -53.49 -0.28 -10.95 16 7 C 0.10 1.99 4.62 -67.67 -0.31 1.68 16 8 C 0.12 2.33 8.44 -8.50 -0.07 2.26 16 9 N -0.62 -15.81 3.70 -184.60 -0.68 -16.49 16 10 C -0.30 -9.03 11.08 -15.06 -0.17 -9.20 16 11 H 0.08 2.61 8.05 -52.49 -0.42 2.19 16 12 C -0.02 -0.70 5.50 -17.43 -0.10 -0.80 16 13 N -0.93 -29.98 13.70 55.49 0.76 -29.22 16 14 Si 1.07 27.75 25.13 -169.99 -4.27 23.47 16 15 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 16 H -0.29 -7.37 6.65 56.52 0.38 -7.00 16 17 H -0.29 -6.89 6.13 56.52 0.35 -6.54 16 18 C 0.09 1.93 5.53 -8.37 -0.05 1.89 16 19 N -0.59 -6.41 2.61 -168.59 -0.44 -6.85 16 20 C 0.12 0.80 6.26 -4.39 -0.03 0.77 16 21 C -0.14 -0.82 6.03 -26.50 -0.16 -0.98 16 22 C -0.12 -0.73 6.03 -26.52 -0.16 -0.89 16 23 C -0.13 -1.22 6.03 -28.10 -0.17 -1.39 16 24 C 0.53 6.88 6.12 -11.88 -0.07 6.80 16 25 O -0.53 -9.22 12.86 -15.21 -0.20 -9.41 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.09 1.19 5.84 -51.93 -0.30 0.89 16 28 H 0.07 0.57 7.56 -51.93 -0.39 0.18 16 29 H 0.40 4.56 8.17 -40.82 -0.33 4.22 16 30 H 0.12 2.56 7.45 -51.93 -0.39 2.17 16 31 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.04 0.71 8.13 -51.93 -0.42 0.29 16 33 H 0.26 8.27 8.73 -40.82 -0.36 7.91 16 34 H 0.05 0.96 7.73 -51.93 -0.40 0.56 16 35 H 0.05 1.25 4.65 -51.93 -0.24 1.01 16 36 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 37 H 0.07 0.48 8.03 -51.93 -0.42 0.07 16 38 H 0.08 0.57 8.12 -51.93 -0.42 0.15 16 39 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.08 0.34 8.14 -51.92 -0.42 -0.08 16 41 H 0.07 0.37 8.12 -51.93 -0.42 -0.06 16 42 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 336.76 15.07 5.07 5.07 Total: -1.00 -38.42 336.76 -8.24 -46.66 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: -6.76 Total: 0.54 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: -1.23 Total: 7.93 kcal Atomic # 7 Polarization: -62.87 SS G_CDS: -0.64 Total: -63.52 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -0.41 Total: -20.17 kcal Atomic # 14 Polarization: 27.75 SS G_CDS: -4.27 Total: 23.47 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -38.42 -8.24 -46.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031428927.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.893 kcal (2) G-P(sol) polarization free energy of solvation -38.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds