Wall clock time and date at job start Tue Mar 31 2020 03:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.66657 * 2 1 4 4 C 1.53069 * 109.67199 * 120.53813 * 2 1 3 5 5 C 1.50181 * 109.88838 * 168.63754 * 4 2 1 6 6 O 1.21278 * 118.24154 * 162.39729 * 5 4 2 7 7 N 1.33352 * 123.50692 * 342.41156 * 5 4 2 8 8 C 1.45751 * 124.10739 * 2.22988 * 7 5 4 9 9 H 1.09005 * 109.13416 * 101.13064 * 8 7 5 10 10 C 1.50703 * 109.30078 * 220.61055 * 8 7 5 11 11 O 1.21284 * 119.99803 * 21.03582 * 10 8 7 12 12 N 1.34777 * 120.00177 * 200.76442 * 10 8 7 13 13 C 1.46501 * 119.99813 * 180.27751 * 12 10 8 14 14 C 1.52995 * 109.46702 * 179.97438 * 13 12 10 15 15 C 1.53953 * 113.74372 * 271.67064 * 14 13 12 16 16 N 1.47580 * 86.11543 * 222.05033 * 15 14 13 17 17 C 1.36938 * 134.48677 * 204.63830 * 16 15 14 18 18 H 1.08000 * 119.99786 * 173.48495 * 17 16 15 19 19 C 1.38816 * 120.00148 * 353.48293 * 17 16 15 20 20 N 1.31619 * 119.99880 * 5.06463 * 19 17 16 21 21 Si 1.86803 * 119.99882 * 185.06634 * 19 17 16 22 22 H 1.48499 * 109.47075 * 94.98874 * 21 19 17 23 23 H 1.48500 * 109.46962 * 214.98773 * 21 19 17 24 24 H 1.48502 * 109.46956 * 334.98867 * 21 19 17 25 25 C 1.47579 * 91.01967 * 24.63781 * 16 15 14 26 26 C 1.52919 * 110.48833 * 340.92316 * 8 7 5 27 27 H 1.08996 * 109.47425 * 180.49548 * 1 2 3 28 28 H 1.09003 * 109.47457 * 300.49981 * 1 2 3 29 29 H 1.09003 * 109.47250 * 60.49470 * 1 2 3 30 30 H 1.09000 * 109.40044 * 288.76016 * 4 2 1 31 31 H 1.08993 * 109.40086 * 48.58995 * 4 2 1 32 32 H 0.96996 * 117.94109 * 182.22605 * 7 5 4 33 33 H 0.96993 * 119.99475 * 0.27196 * 12 10 8 34 34 H 1.09001 * 109.46705 * 299.98953 * 13 12 10 35 35 H 1.08991 * 109.47221 * 59.99642 * 13 12 10 36 36 H 1.09007 * 112.94860 * 43.40443 * 14 13 12 37 37 H 1.08996 * 113.76196 * 336.35491 * 15 14 13 38 38 H 1.08997 * 113.76764 * 107.74624 * 15 14 13 39 39 H 0.96999 * 119.99795 * 180.02562 * 20 19 17 40 40 H 1.08993 * 113.77280 * 221.05876 * 25 16 15 41 41 H 1.09003 * 113.87128 * 89.67170 * 25 16 15 42 42 H 1.08997 * 109.60341 * 170.51234 * 26 8 7 43 43 H 1.09005 * 109.59969 * 290.83076 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8968 1.0264 0.0000 4 6 2.0453 -0.7324 1.2414 5 6 3.5210 -0.9796 1.1130 6 8 4.1474 -1.2479 2.1162 7 7 4.1794 -0.9197 -0.0452 8 6 3.5642 -0.5633 -1.3175 9 1 3.8001 0.4752 -1.5499 10 6 4.1129 -1.4535 -2.4027 11 8 4.6208 -2.5168 -2.1158 12 7 4.0343 -1.0704 -3.6925 13 6 4.5623 -1.9386 -4.7479 14 6 4.3482 -1.2742 -6.1093 15 6 2.9885 -1.6025 -6.7524 16 7 3.7344 -1.7437 -8.0180 17 6 3.4055 -1.6357 -9.3429 18 1 4.1772 -1.6863 -10.0967 19 6 2.0801 -1.4612 -9.7170 20 7 1.1525 -1.2996 -8.7973 21 14 1.6131 -1.4557 -11.5257 22 1 1.1780 -2.8171 -11.9287 23 1 0.5025 -0.4952 -11.7473 24 1 2.7877 -1.0504 -12.3389 25 6 4.9771 -2.0479 -7.2823 26 6 2.0462 -0.7327 -1.2442 27 1 -0.3634 -1.0276 0.0089 28 1 -0.3634 0.5216 0.8855 29 1 -0.3634 0.5061 -0.8944 30 1 1.8558 -0.1237 2.1256 31 1 1.5268 -1.6860 1.3404 32 1 5.1271 -1.1262 -0.0404 33 1 3.6282 -0.2200 -3.9219 34 1 5.6279 -2.1006 -4.5858 35 1 4.0416 -2.8959 -4.7253 36 1 4.5886 -0.2110 -6.1058 37 1 2.5475 -2.5334 -6.3961 38 1 2.2870 -0.7684 -6.7466 39 1 0.2263 -1.1781 -9.0587 40 1 5.8630 -1.5695 -7.6996 41 1 5.1219 -3.1094 -7.0811 42 1 1.5872 -0.3067 -2.1363 43 1 1.7994 -1.7923 -1.1764 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031679023.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:59:26 Heat of formation + Delta-G solvation = -32.100820 kcal Electronic energy + Delta-G solvation = -23702.908691 eV Core-core repulsion = 20170.197433 eV Total energy + Delta-G solvation = -3532.711257 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.01085 -39.41918 -38.09065 -36.89881 -34.66450 -34.23073 -32.27706 -30.55083 -28.78265 -28.19655 -26.16624 -24.89860 -24.54704 -22.12994 -21.75253 -20.69850 -19.55394 -19.17421 -17.76347 -17.16906 -16.78516 -16.68151 -15.78314 -15.48828 -15.21040 -14.93021 -14.67246 -14.46727 -14.00663 -13.78736 -13.71527 -13.37606 -13.02001 -12.83871 -12.47472 -12.41991 -12.10576 -11.76140 -11.50380 -11.40707 -11.28728 -11.15905 -11.05813 -10.79994 -10.64457 -10.29338 -10.03044 -9.86539 -9.82984 -9.52178 -9.26055 -8.98820 -8.85045 -6.93441 -5.85146 -3.16158 2.37249 2.40747 2.84080 3.26958 3.34844 3.40492 3.41946 4.18630 4.24397 4.26172 4.31142 4.39991 4.66258 4.76711 4.99154 5.08657 5.16986 5.20672 5.20891 5.26905 5.32254 5.38075 5.48209 5.57426 5.61485 5.73479 5.77336 5.90023 5.93885 6.14617 6.26448 6.43037 6.49979 6.55779 6.65064 7.05326 7.13413 7.25697 7.43308 7.48950 7.91359 7.97021 8.10332 8.98364 9.64228 10.53485 11.32649 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.024897 B = 0.002914 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.342226 B = 9607.371105 C =10562.980807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 H 0.083 0.917 4 C -0.132 4.132 5 C 0.525 3.475 6 O -0.558 6.558 7 N -0.699 5.699 8 C 0.126 3.874 9 H 0.099 0.901 10 C 0.498 3.502 11 O -0.534 6.534 12 N -0.714 5.714 13 C 0.129 3.871 14 C -0.154 4.154 15 C 0.172 3.828 16 N -0.612 5.612 17 C -0.225 4.225 18 H 0.080 0.920 19 C -0.007 4.007 20 N -0.920 5.920 21 Si 0.910 3.090 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.127 3.873 26 C -0.125 4.125 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.404 0.596 33 H 0.404 0.596 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.029 0.971 38 H 0.068 0.932 39 H 0.254 0.746 40 H 0.045 0.955 41 H 0.036 0.964 42 H 0.097 0.903 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.289 5.691 16.853 17.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 H 0.101 0.899 4 C -0.172 4.172 5 C 0.312 3.688 6 O -0.436 6.436 7 N -0.352 5.352 8 C 0.016 3.984 9 H 0.117 0.883 10 C 0.282 3.718 11 O -0.410 6.410 12 N -0.365 5.365 13 C 0.005 3.995 14 C -0.174 4.174 15 C 0.046 3.954 16 N -0.338 5.338 17 C -0.352 4.352 18 H 0.098 0.902 19 C -0.203 4.203 20 N -0.567 5.567 21 Si 0.740 3.260 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.205 1.205 25 C 0.001 3.999 26 C -0.163 4.163 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.241 0.759 33 H 0.238 0.762 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.109 0.891 37 H 0.046 0.954 38 H 0.086 0.914 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.053 0.947 42 H 0.115 0.885 43 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.524 4.875 17.277 17.959 hybrid contribution -0.189 0.127 -1.356 1.375 sum 0.335 5.002 15.920 16.691 Atomic orbital electron populations 1.21819 0.93553 1.02586 1.02531 1.21254 0.97014 0.99737 0.93148 0.89881 1.21781 0.91628 1.03544 1.00244 1.20157 0.90428 0.75805 0.82382 1.90768 1.68418 1.49227 1.35190 1.45233 1.13697 1.70066 1.06176 1.20906 0.95149 0.98772 0.83536 0.88304 1.20694 0.79845 0.87299 0.83958 1.90749 1.44440 1.23173 1.82636 1.46038 1.61034 1.23739 1.05723 1.21510 0.98623 0.93726 0.85599 1.23845 1.02275 1.00020 0.91275 1.22259 0.91263 0.98647 0.83191 1.45916 1.05584 1.81035 1.01286 1.19038 0.92195 1.43078 0.80929 0.90192 1.24815 0.95486 1.02258 0.97767 1.69821 1.00586 1.54986 1.31266 0.86132 0.77982 0.77452 0.84419 1.21593 1.21674 1.20534 1.22498 0.91716 0.96327 0.89386 1.21980 0.91163 1.03103 1.00100 0.92158 0.92118 0.91723 0.87960 0.87950 0.75902 0.76188 0.91779 0.91209 0.89136 0.95372 0.91352 0.93632 0.93672 0.94654 0.88465 0.89939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.20 37.16 0.34 -0.43 16 2 C -0.09 -0.56 2.80 -90.41 -0.25 -0.81 16 3 H 0.08 0.43 8.13 -51.93 -0.42 0.01 16 4 C -0.13 -1.02 5.36 -28.10 -0.15 -1.17 16 5 C 0.52 5.99 7.71 -11.87 -0.09 5.90 16 6 O -0.56 -8.69 17.78 5.56 0.10 -8.59 16 7 N -0.70 -7.26 4.79 -55.99 -0.27 -7.53 16 8 C 0.13 1.06 3.45 -69.53 -0.24 0.82 16 9 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 10 C 0.50 5.88 6.98 -10.98 -0.08 5.80 16 11 O -0.53 -8.59 16.40 5.55 0.09 -8.49 16 12 N -0.71 -7.97 5.56 -60.30 -0.33 -8.30 16 13 C 0.13 1.79 5.53 -4.04 -0.02 1.77 16 14 C -0.15 -2.51 3.94 -89.69 -0.35 -2.86 16 15 C 0.17 3.70 6.98 -2.97 -0.02 3.68 16 16 N -0.61 -15.06 3.70 -177.90 -0.66 -15.72 16 17 C -0.22 -6.16 10.70 -15.06 -0.16 -6.32 16 18 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 19 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 20 N -0.92 -26.33 11.51 55.49 0.64 -25.69 16 21 Si 0.91 21.60 29.56 -169.99 -5.02 16.58 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 25 C 0.13 2.44 8.50 -2.97 -0.03 2.41 16 26 C -0.13 -0.90 4.58 -26.60 -0.12 -1.02 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.10 0.74 8.10 -51.93 -0.42 0.32 16 32 H 0.40 4.54 8.46 -40.82 -0.35 4.19 16 33 H 0.40 3.55 8.47 -40.82 -0.35 3.21 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 1.09 7.83 -51.93 -0.41 0.68 16 36 H 0.09 1.39 8.14 -51.92 -0.42 0.96 16 37 H 0.03 0.64 7.89 -51.93 -0.41 0.23 16 38 H 0.07 1.60 7.35 -51.93 -0.38 1.22 16 39 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 40 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.04 0.66 8.10 -51.93 -0.42 0.24 16 42 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 LS Contribution 353.71 15.07 5.33 5.33 Total: -1.00 -34.79 353.71 -8.32 -43.11 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -6.92 Total: 1.80 kcal Atomic # 6 Polarization: 8.77 SS G_CDS: -1.27 Total: 7.50 kcal Atomic # 7 Polarization: -56.62 SS G_CDS: -0.62 Total: -57.24 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: 0.19 Total: -17.09 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -34.79 -8.32 -43.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031679023.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.014 kcal (2) G-P(sol) polarization free energy of solvation -34.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds