Wall clock time and date at job start Tue Mar 31 2020 03:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.66657 * 2 1 4 4 C 1.53069 * 109.67199 * 120.53813 * 2 1 3 5 5 C 1.50181 * 109.88838 * 168.63754 * 4 2 1 6 6 O 1.21278 * 118.24154 * 162.39729 * 5 4 2 7 7 N 1.33352 * 123.50692 * 342.41156 * 5 4 2 8 8 C 1.45751 * 124.10739 * 2.22988 * 7 5 4 9 9 H 1.09005 * 109.13416 * 101.13064 * 8 7 5 10 10 C 1.50703 * 109.30078 * 220.61055 * 8 7 5 11 11 O 1.21284 * 119.99803 * 21.03582 * 10 8 7 12 12 N 1.34777 * 120.00177 * 200.76442 * 10 8 7 13 13 C 1.46501 * 119.99813 * 180.27751 * 12 10 8 14 14 C 1.52995 * 109.46702 * 179.97438 * 13 12 10 15 15 C 1.53953 * 113.74372 * 271.67064 * 14 13 12 16 16 N 1.47580 * 86.11543 * 222.05033 * 15 14 13 17 17 C 1.36938 * 134.48677 * 204.63830 * 16 15 14 18 18 H 1.08000 * 119.99786 * 173.48495 * 17 16 15 19 19 C 1.38816 * 120.00148 * 353.48293 * 17 16 15 20 20 N 1.31619 * 119.99880 * 5.06463 * 19 17 16 21 21 Si 1.86803 * 119.99882 * 185.06634 * 19 17 16 22 22 H 1.48499 * 109.47075 * 94.98874 * 21 19 17 23 23 H 1.48500 * 109.46962 * 214.98773 * 21 19 17 24 24 H 1.48502 * 109.46956 * 334.98867 * 21 19 17 25 25 C 1.47579 * 91.01967 * 24.63781 * 16 15 14 26 26 C 1.52919 * 110.48833 * 340.92316 * 8 7 5 27 27 H 1.08996 * 109.47425 * 180.49548 * 1 2 3 28 28 H 1.09003 * 109.47457 * 300.49981 * 1 2 3 29 29 H 1.09003 * 109.47250 * 60.49470 * 1 2 3 30 30 H 1.09000 * 109.40044 * 288.76016 * 4 2 1 31 31 H 1.08993 * 109.40086 * 48.58995 * 4 2 1 32 32 H 0.96996 * 117.94109 * 182.22605 * 7 5 4 33 33 H 0.96993 * 119.99475 * 0.27196 * 12 10 8 34 34 H 1.09001 * 109.46705 * 299.98953 * 13 12 10 35 35 H 1.08991 * 109.47221 * 59.99642 * 13 12 10 36 36 H 1.09007 * 112.94860 * 43.40443 * 14 13 12 37 37 H 1.08996 * 113.76196 * 336.35491 * 15 14 13 38 38 H 1.08997 * 113.76764 * 107.74624 * 15 14 13 39 39 H 0.96999 * 119.99795 * 180.02562 * 20 19 17 40 40 H 1.08993 * 113.77280 * 221.05876 * 25 16 15 41 41 H 1.09003 * 113.87128 * 89.67170 * 25 16 15 42 42 H 1.08997 * 109.60341 * 170.51234 * 26 8 7 43 43 H 1.09005 * 109.59969 * 290.83076 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8968 1.0264 0.0000 4 6 2.0453 -0.7324 1.2414 5 6 3.5210 -0.9796 1.1130 6 8 4.1474 -1.2479 2.1162 7 7 4.1794 -0.9197 -0.0452 8 6 3.5642 -0.5633 -1.3175 9 1 3.8001 0.4752 -1.5499 10 6 4.1129 -1.4535 -2.4027 11 8 4.6208 -2.5168 -2.1158 12 7 4.0343 -1.0704 -3.6925 13 6 4.5623 -1.9386 -4.7479 14 6 4.3482 -1.2742 -6.1093 15 6 2.9885 -1.6025 -6.7524 16 7 3.7344 -1.7437 -8.0180 17 6 3.4055 -1.6357 -9.3429 18 1 4.1772 -1.6863 -10.0967 19 6 2.0801 -1.4612 -9.7170 20 7 1.1525 -1.2996 -8.7973 21 14 1.6131 -1.4557 -11.5257 22 1 1.1780 -2.8171 -11.9287 23 1 0.5025 -0.4952 -11.7473 24 1 2.7877 -1.0504 -12.3389 25 6 4.9771 -2.0479 -7.2823 26 6 2.0462 -0.7327 -1.2442 27 1 -0.3634 -1.0276 0.0089 28 1 -0.3634 0.5216 0.8855 29 1 -0.3634 0.5061 -0.8944 30 1 1.8558 -0.1237 2.1256 31 1 1.5268 -1.6860 1.3404 32 1 5.1271 -1.1262 -0.0404 33 1 3.6282 -0.2200 -3.9219 34 1 5.6279 -2.1006 -4.5858 35 1 4.0416 -2.8959 -4.7253 36 1 4.5886 -0.2110 -6.1058 37 1 2.5475 -2.5334 -6.3961 38 1 2.2870 -0.7684 -6.7466 39 1 0.2263 -1.1781 -9.0587 40 1 5.8630 -1.5695 -7.6996 41 1 5.1219 -3.1094 -7.0811 42 1 1.5872 -0.3067 -2.1363 43 1 1.7994 -1.7923 -1.1764 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031679023.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:59:25 Heat of formation + Delta-G solvation = -58.263760 kcal Electronic energy + Delta-G solvation = -23704.043201 eV Core-core repulsion = 20170.197433 eV Total energy + Delta-G solvation = -3533.845767 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.86036 -40.49645 -39.59450 -37.70740 -35.83417 -34.98140 -34.18192 -31.53146 -30.21300 -28.78792 -27.62805 -26.53026 -25.50348 -23.69392 -22.48067 -21.68455 -20.64022 -20.21152 -18.81209 -18.59456 -18.01743 -17.61296 -16.96022 -16.68083 -16.43110 -16.09598 -15.73362 -15.44181 -15.41119 -14.97572 -14.68944 -14.44153 -14.23146 -13.94091 -13.45543 -13.29207 -13.08396 -12.97672 -12.87982 -12.76685 -12.53358 -12.42473 -12.20383 -11.88955 -11.80725 -11.63971 -11.58766 -11.27639 -11.15953 -10.85802 -10.77046 -10.18206 -10.05920 -8.88827 -7.91768 -5.23077 1.46421 1.46463 1.48121 1.50524 1.56541 1.96236 2.40774 2.48323 3.29174 3.41301 3.50445 3.54907 3.63210 3.74173 3.77673 4.00293 4.09840 4.20794 4.38229 4.45705 4.62313 4.69109 4.69845 4.79429 4.79900 4.85761 4.88383 4.90430 4.99414 5.11696 5.16190 5.27844 5.33451 5.39825 5.49439 5.57072 5.63804 5.67439 5.96100 6.22862 6.52200 6.94403 7.09608 7.18642 7.61696 8.58088 9.25683 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.024897 B = 0.002914 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.342226 B = 9607.371105 C =10562.980807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.082 4.082 3 H 0.100 0.900 4 C -0.128 4.128 5 C 0.520 3.480 6 O -0.608 6.608 7 N -0.699 5.699 8 C 0.132 3.868 9 H 0.139 0.861 10 C 0.500 3.500 11 O -0.580 6.580 12 N -0.704 5.704 13 C 0.141 3.859 14 C -0.112 4.112 15 C 0.169 3.831 16 N -0.646 5.646 17 C -0.237 4.237 18 H 0.081 0.919 19 C -0.064 4.064 20 N -0.948 5.948 21 Si 0.973 3.027 22 H -0.291 1.291 23 H -0.292 1.292 24 H -0.268 1.268 25 C 0.122 3.878 26 C -0.126 4.126 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.114 0.886 31 H 0.105 0.895 32 H 0.398 0.602 33 H 0.418 0.582 34 H 0.074 0.926 35 H 0.051 0.949 36 H 0.110 0.890 37 H 0.011 0.989 38 H 0.045 0.955 39 H 0.249 0.751 40 H 0.061 0.939 41 H 0.043 0.957 42 H 0.116 0.884 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.320 7.261 16.825 18.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.101 4.101 3 H 0.119 0.881 4 C -0.167 4.167 5 C 0.309 3.691 6 O -0.490 6.490 7 N -0.349 5.349 8 C 0.024 3.976 9 H 0.156 0.844 10 C 0.286 3.714 11 O -0.459 6.459 12 N -0.356 5.356 13 C 0.016 3.984 14 C -0.132 4.132 15 C 0.044 3.956 16 N -0.372 5.372 17 C -0.366 4.366 18 H 0.099 0.901 19 C -0.257 4.257 20 N -0.597 5.597 21 Si 0.802 3.198 22 H -0.219 1.219 23 H -0.219 1.219 24 H -0.192 1.192 25 C -0.003 4.003 26 C -0.164 4.164 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.133 0.867 31 H 0.123 0.877 32 H 0.233 0.767 33 H 0.256 0.744 34 H 0.093 0.907 35 H 0.069 0.931 36 H 0.128 0.872 37 H 0.029 0.971 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.079 0.921 41 H 0.060 0.940 42 H 0.134 0.866 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.562 6.477 17.225 18.411 hybrid contribution -0.142 -0.408 -1.361 1.428 sum 0.420 6.069 15.864 16.990 Atomic orbital electron populations 1.21806 0.92695 1.02525 1.03290 1.21221 0.97521 1.00053 0.91294 0.88126 1.21825 0.88816 1.04262 1.01832 1.20828 0.91736 0.74728 0.81791 1.90740 1.69715 1.51660 1.36894 1.45348 1.13514 1.69277 1.06758 1.21109 0.95615 0.99619 0.81284 0.84392 1.21246 0.78786 0.86937 0.84433 1.90739 1.46564 1.25346 1.83289 1.45866 1.60675 1.23910 1.05104 1.21187 0.99109 0.93045 0.85011 1.23419 0.97465 1.00815 0.91497 1.22192 0.93169 0.97008 0.83225 1.46345 1.08199 1.81433 1.01248 1.19410 0.92466 1.42023 0.82684 0.90078 1.25594 0.95626 1.02852 1.01639 1.69979 1.00457 1.56415 1.32851 0.85135 0.77713 0.76934 0.80028 1.21870 1.21870 1.19249 1.22714 0.90642 0.97260 0.89690 1.22048 0.90131 1.02478 1.01708 0.92690 0.91154 0.91184 0.86740 0.87677 0.76686 0.74420 0.90748 0.93051 0.87186 0.97142 0.93661 0.94201 0.92089 0.93965 0.86596 0.91729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.20 71.98 0.66 -0.46 16 2 C -0.08 -0.75 2.80 -10.66 -0.03 -0.78 16 3 H 0.10 0.64 8.13 -2.39 -0.02 0.62 16 4 C -0.13 -1.76 5.36 29.71 0.16 -1.60 16 5 C 0.52 11.54 7.71 87.72 0.68 12.22 16 6 O -0.61 -19.23 17.78 -3.02 -0.05 -19.29 16 7 N -0.70 -13.79 4.79 -450.23 -2.16 -15.95 16 8 C 0.13 1.91 3.45 44.36 0.15 2.06 16 9 H 0.14 1.03 8.14 -2.38 -0.02 1.01 16 10 C 0.50 10.97 6.98 87.66 0.61 11.59 16 11 O -0.58 -18.39 16.40 -3.04 -0.05 -18.44 16 12 N -0.70 -14.08 5.56 -463.07 -2.57 -16.65 16 13 C 0.14 3.67 5.53 86.38 0.48 4.15 16 14 C -0.11 -3.45 3.94 -10.13 -0.04 -3.49 16 15 C 0.17 7.29 6.98 86.48 0.60 7.90 16 16 N -0.65 -31.57 3.70 -716.75 -2.65 -34.22 16 17 C -0.24 -12.98 10.70 84.03 0.90 -12.08 16 18 H 0.08 4.27 7.83 -2.91 -0.02 4.24 16 19 C -0.06 -3.53 5.50 84.86 0.47 -3.06 16 20 N -0.95 -55.01 11.51 21.65 0.25 -54.76 16 21 Si 0.97 44.52 29.56 68.60 2.03 46.54 16 22 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 23 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 24 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 25 C 0.12 4.49 8.50 86.48 0.74 5.23 16 26 C -0.13 -1.50 4.58 30.68 0.14 -1.36 16 27 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.11 1.41 8.10 -2.39 -0.02 1.39 16 32 H 0.40 8.81 8.46 -92.71 -0.78 8.03 16 33 H 0.42 6.02 8.47 -92.71 -0.79 5.23 16 34 H 0.07 1.86 8.14 -2.39 -0.02 1.85 16 35 H 0.05 1.57 7.83 -2.39 -0.02 1.55 16 36 H 0.11 3.02 8.14 -2.38 -0.02 3.00 16 37 H 0.01 0.49 7.89 -2.39 -0.02 0.48 16 38 H 0.04 2.14 7.35 -2.39 -0.02 2.13 16 39 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 40 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.04 1.52 8.10 -2.39 -0.02 1.50 16 42 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.06 1.04 8.10 -2.38 -0.02 1.02 16 Total: -1.00 -77.35 353.71 -0.24 -77.59 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -0.55 Total: 14.86 kcal Atomic # 6 Polarization: 14.81 SS G_CDS: 5.52 Total: 20.32 kcal Atomic # 7 Polarization: -114.45 SS G_CDS: -7.13 Total: -121.58 kcal Atomic # 8 Polarization: -37.63 SS G_CDS: -0.10 Total: -37.73 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Total: -77.35 -0.24 -77.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031679023.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.326 kcal (2) G-P(sol) polarization free energy of solvation -77.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds