Wall clock time and date at job start Tue Mar 31 2020 04:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46501 * 109.47004 * 2 1 4 4 C 1.46760 * 124.34597 * 89.99990 * 3 2 1 5 5 C 1.54487 * 105.47095 * 163.00236 * 4 3 2 6 6 H 1.09001 * 110.96904 * 267.25849 * 5 4 3 7 7 C 1.50699 * 110.96677 * 143.53223 * 5 4 3 8 8 O 1.21282 * 120.00019 * 0.02562 * 7 5 4 9 9 N 1.34774 * 120.00135 * 179.97438 * 7 5 4 10 10 C 1.46500 * 120.00360 * 180.02562 * 9 7 5 11 11 C 1.52996 * 109.47099 * 180.02562 * 10 9 7 12 12 H 1.09001 * 112.96834 * 55.33109 * 11 10 9 13 13 C 1.53946 * 113.77066 * 187.01050 * 11 10 9 14 14 C 1.53946 * 86.29167 * 138.02054 * 13 11 10 15 15 N 1.47580 * 113.77096 * 283.65276 * 11 10 9 16 16 C 1.36942 * 134.49092 * 40.94953 * 15 11 10 17 17 H 1.07993 * 119.99779 * 353.50675 * 16 15 11 18 18 C 1.38813 * 119.99800 * 173.50406 * 16 15 11 19 19 N 1.31611 * 120.00300 * 5.07194 * 18 16 15 20 20 Si 1.86804 * 119.99514 * 185.07664 * 18 16 15 21 21 H 1.48494 * 109.47413 * 94.99049 * 20 18 16 22 22 H 1.48505 * 109.46497 * 214.98540 * 20 18 16 23 23 H 1.48494 * 109.47102 * 334.98479 * 20 18 16 24 24 C 1.54628 * 101.76227 * 25.41782 * 5 4 3 25 25 C 1.34417 * 124.34739 * 270.02050 * 3 2 1 26 26 O 1.21273 * 124.94719 * 0.39089 * 25 3 2 27 27 H 1.08993 * 109.46871 * 299.99744 * 1 2 3 28 28 H 1.08998 * 109.47126 * 60.00263 * 1 2 3 29 29 H 1.09008 * 109.46964 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47158 * 239.99982 * 2 1 3 31 31 H 1.09004 * 109.47073 * 120.00470 * 2 1 3 32 32 H 1.09003 * 110.24879 * 44.01043 * 4 3 2 33 33 H 1.08997 * 110.32449 * 282.03948 * 4 3 2 34 34 H 0.97005 * 119.99985 * 0.02562 * 9 7 5 35 35 H 1.09000 * 109.47094 * 60.00369 * 10 9 7 36 36 H 1.08999 * 109.47093 * 300.00122 * 10 9 7 37 37 H 1.08997 * 113.74634 * 252.36593 * 13 11 10 38 38 H 1.09007 * 113.74049 * 23.67792 * 13 11 10 39 39 H 1.08996 * 113.76952 * 90.69866 * 14 13 11 40 40 H 1.09006 * 113.77061 * 221.98440 * 14 13 11 41 41 H 0.97000 * 120.00315 * 179.97438 * 19 18 16 42 42 H 1.08994 * 110.48442 * 93.88197 * 24 5 4 43 43 H 1.09003 * 110.48131 * 216.52078 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2943 2.1619 1.2117 5 6 3.1740 3.3444 0.7486 6 1 4.2328 3.1041 0.8451 7 6 2.8367 4.5989 1.5124 8 8 1.9707 4.5777 2.3613 9 7 3.4981 5.7442 1.2530 10 6 3.1706 6.9637 1.9959 11 6 4.0597 8.1105 1.5110 12 1 3.9959 8.2725 0.4350 13 6 3.9189 9.3988 2.3419 14 6 5.4512 9.5103 2.2443 15 7 5.4428 8.0478 2.0220 16 6 6.3504 7.0404 2.2136 17 1 6.0555 6.0123 2.0638 18 6 7.6493 7.3406 2.6002 19 7 7.9823 8.5829 2.8794 20 14 8.9247 5.9814 2.7240 21 1 9.6957 5.9091 1.4569 22 1 9.8488 6.2709 3.8499 23 1 8.2435 4.6838 2.9637 24 6 2.7686 3.4757 -0.7378 25 6 2.2707 2.0964 -1.1098 26 8 2.1210 1.6945 -2.2442 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 2.8327 1.5532 1.9382 33 1 1.3644 2.5305 1.6446 34 1 4.1910 5.7611 0.5743 35 1 3.3394 6.7974 3.0598 36 1 2.1243 7.2204 1.8297 37 1 3.3870 10.1980 1.8258 38 1 3.5549 9.2298 3.3554 39 1 5.7960 10.0835 1.3837 40 1 5.9300 9.8121 3.1759 41 1 8.8899 8.7927 3.1499 42 1 1.9735 4.2122 -0.8527 43 1 3.6317 3.7466 -1.3460 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038309946.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:34:23 Heat of formation + Delta-G solvation = -40.661031 kcal Electronic energy + Delta-G solvation = -24091.282886 eV Core-core repulsion = 20558.200431 eV Total energy + Delta-G solvation = -3533.082456 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.88347 -40.45442 -39.47852 -37.44237 -35.50772 -34.89051 -34.15510 -30.99863 -29.85532 -29.12830 -28.65778 -25.24909 -25.13486 -23.99684 -23.15172 -21.34552 -20.74235 -20.39918 -18.93547 -18.21049 -17.83896 -17.08536 -16.96718 -16.89215 -16.36236 -16.10745 -15.66839 -15.30461 -15.07917 -14.86766 -14.61852 -14.44502 -14.36305 -14.13648 -13.49188 -13.27783 -13.21993 -12.94223 -12.90690 -12.64872 -12.54004 -12.52954 -12.38726 -12.25349 -12.01615 -11.82585 -11.49737 -11.34924 -11.09143 -10.79625 -10.70386 -9.98489 -9.79551 -8.83377 -7.84277 -5.14700 1.44340 1.48172 1.48629 1.56661 1.58455 1.89142 2.25625 2.51510 3.17042 3.30836 3.37462 3.45515 3.75144 3.85190 4.02604 4.09646 4.14442 4.23139 4.24801 4.40661 4.45673 4.52422 4.59694 4.69056 4.73473 4.76487 4.80149 4.91170 4.92353 4.92790 5.09575 5.16147 5.24335 5.38572 5.49247 5.52423 5.64859 5.77850 6.00281 6.00948 6.57845 6.98127 7.04457 7.22996 7.69831 8.65444 9.33899 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.017795 B = 0.003790 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.059849 B = 7386.063887 C = 8243.409811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.114 3.886 3 N -0.614 5.614 4 C 0.120 3.880 5 C -0.116 4.116 6 H 0.137 0.863 7 C 0.526 3.474 8 O -0.577 6.577 9 N -0.707 5.707 10 C 0.132 3.868 11 C 0.133 3.867 12 H 0.071 0.929 13 C -0.132 4.132 14 C 0.151 3.849 15 N -0.629 5.629 16 C -0.211 4.211 17 H 0.092 0.908 18 C -0.072 4.072 19 N -0.956 5.956 20 Si 0.964 3.036 21 H -0.290 1.290 22 H -0.305 1.305 23 H -0.264 1.264 24 C -0.136 4.136 25 C 0.514 3.486 26 O -0.575 6.575 27 H 0.060 0.940 28 H 0.037 0.963 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.082 0.918 34 H 0.410 0.590 35 H 0.045 0.955 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.021 0.979 40 H 0.033 0.967 41 H 0.244 0.756 42 H 0.112 0.888 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.161 -11.762 -4.530 18.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.006 4.006 3 N -0.347 5.347 4 C -0.003 4.003 5 C -0.138 4.138 6 H 0.155 0.845 7 C 0.312 3.688 8 O -0.457 6.457 9 N -0.357 5.357 10 C 0.007 3.993 11 C 0.027 3.973 12 H 0.088 0.912 13 C -0.171 4.171 14 C 0.026 3.974 15 N -0.356 5.356 16 C -0.339 4.339 17 H 0.110 0.890 18 C -0.265 4.265 19 N -0.605 5.605 20 Si 0.794 3.206 21 H -0.218 1.218 22 H -0.232 1.232 23 H -0.188 1.188 24 C -0.176 4.176 25 C 0.303 3.697 26 O -0.455 6.455 27 H 0.079 0.921 28 H 0.056 0.944 29 H 0.106 0.894 30 H 0.093 0.907 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.100 0.900 34 H 0.246 0.754 35 H 0.063 0.937 36 H 0.100 0.900 37 H 0.110 0.890 38 H 0.097 0.903 39 H 0.039 0.961 40 H 0.051 0.949 41 H 0.053 0.947 42 H 0.130 0.870 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -13.595 -12.211 -4.408 18.798 hybrid contribution 1.550 -0.219 -0.095 1.568 sum -12.045 -12.430 -4.503 17.885 Atomic orbital electron populations 1.22121 0.95294 1.03356 1.01553 1.21574 0.94853 0.80078 1.04132 1.48506 1.64769 1.14498 1.06964 1.22013 1.00328 0.91217 0.86736 1.22205 1.03946 0.92861 0.94746 0.84544 1.20371 0.80848 0.84872 0.82706 1.90678 1.33972 1.85751 1.35301 1.45923 1.39563 1.09399 1.40797 1.21548 0.98749 0.83564 0.95410 1.22659 0.84126 0.93299 0.97247 0.91215 1.23577 0.96316 0.96857 1.00334 1.22160 0.92780 0.84920 0.97587 1.46479 1.12169 1.03610 1.73346 1.19365 0.89607 0.87748 1.37192 0.89012 1.25556 0.99259 0.98123 1.03559 1.70015 1.18188 1.18789 1.53549 0.85253 0.79475 0.79383 0.76479 1.21751 1.23205 1.18839 1.22320 1.04971 0.95380 0.94978 1.21123 0.76343 0.88126 0.84137 1.90696 1.55983 1.76165 1.22660 0.92095 0.94421 0.89386 0.90743 0.87517 0.87697 0.89953 0.75383 0.93659 0.90041 0.88988 0.90267 0.96112 0.94890 0.94732 0.86980 0.85476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.43 10.24 71.98 0.74 -1.69 16 2 C 0.11 1.77 6.65 86.38 0.57 2.35 16 3 N -0.61 -11.94 2.93 -817.98 -2.40 -14.33 16 4 C 0.12 2.15 6.71 86.84 0.58 2.74 16 5 C -0.12 -2.20 3.54 -10.48 -0.04 -2.24 16 6 H 0.14 2.19 8.14 -2.39 -0.02 2.17 16 7 C 0.53 13.71 7.06 87.66 0.62 14.32 16 8 O -0.58 -18.83 15.50 -3.04 -0.05 -18.87 16 9 N -0.71 -19.13 5.33 -463.07 -2.47 -21.60 16 10 C 0.13 4.03 5.54 86.38 0.48 4.51 16 11 C 0.13 4.43 4.32 45.09 0.19 4.62 16 12 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 13 C -0.13 -4.27 7.86 31.25 0.25 -4.02 16 14 C 0.15 6.66 7.44 86.41 0.64 7.30 16 15 N -0.63 -28.64 3.59 -690.62 -2.48 -31.12 16 16 C -0.21 -10.61 10.50 84.03 0.88 -9.73 16 17 H 0.09 4.26 7.60 -2.91 -0.02 4.24 16 18 C -0.07 -3.92 5.50 84.86 0.47 -3.46 16 19 N -0.96 -56.15 11.53 21.65 0.25 -55.90 16 20 Si 0.96 43.73 29.56 68.60 2.03 45.76 16 21 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 22 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 23 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 24 C -0.14 -2.54 6.41 30.59 0.20 -2.34 16 25 C 0.51 12.32 8.02 87.90 0.71 13.02 16 26 O -0.57 -18.27 17.59 -3.01 -0.05 -18.32 16 27 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.07 1.29 7.93 -2.39 -0.02 1.27 16 31 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.08 1.72 6.96 -2.39 -0.02 1.70 16 34 H 0.41 10.36 8.47 -92.70 -0.79 9.57 16 35 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.08 2.54 8.10 -2.38 -0.02 2.52 16 39 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.03 1.67 7.37 -2.38 -0.02 1.66 16 41 H 0.24 14.14 8.31 -92.71 -0.77 13.36 16 42 H 0.11 2.05 7.89 -2.39 -0.02 2.03 16 43 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 Total: -1.00 -71.98 357.48 1.34 -70.64 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: 0.22 Total: 18.36 kcal Atomic # 6 Polarization: 19.11 SS G_CDS: 6.29 Total: 25.40 kcal Atomic # 7 Polarization: -115.87 SS G_CDS: -7.09 Total: -122.96 kcal Atomic # 8 Polarization: -37.09 SS G_CDS: -0.10 Total: -37.19 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -71.98 1.34 -70.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038309946.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.980 kcal (2) G-P(sol) polarization free energy of solvation -71.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds