Wall clock time and date at job start Tue Mar 31 2020 04:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46495 * 109.47039 * 2 1 4 4 C 1.46763 * 124.35369 * 90.00164 * 3 2 1 5 5 C 1.54478 * 105.47620 * 196.99258 * 4 3 2 6 6 H 1.09001 * 110.96872 * 92.73857 * 5 4 3 7 7 C 1.50701 * 110.96984 * 216.46561 * 5 4 3 8 8 O 1.21280 * 119.99781 * 359.97438 * 7 5 4 9 9 N 1.34771 * 119.99622 * 180.02562 * 7 5 4 10 10 C 1.46505 * 119.99622 * 179.97438 * 9 7 5 11 11 C 1.52997 * 109.47212 * 179.97438 * 10 9 7 12 12 H 1.09006 * 112.74085 * 303.76218 * 11 10 9 13 13 C 1.53499 * 113.47148 * 172.93730 * 11 10 9 14 14 C 1.53494 * 83.34557 * 219.15289 * 13 11 10 15 15 N 1.47064 * 87.98492 * 26.06657 * 14 13 11 16 16 C 1.36939 * 136.05567 * 152.84382 * 15 14 13 17 17 H 1.08000 * 120.00417 * 180.02562 * 16 15 14 18 18 C 1.38811 * 120.00157 * 0.04959 * 16 15 14 19 19 N 1.31622 * 120.00131 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00297 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47265 * 90.00011 * 20 18 16 22 22 H 1.48507 * 109.47216 * 210.00319 * 20 18 16 23 23 H 1.48503 * 109.47075 * 329.99843 * 20 18 16 24 24 C 1.54635 * 101.76294 * 334.58344 * 5 4 3 25 25 C 1.34428 * 124.34729 * 269.97417 * 3 2 1 26 26 O 1.21283 * 124.93981 * 359.61351 * 25 3 2 27 27 H 1.08999 * 109.47097 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46852 * 300.00279 * 1 2 3 29 29 H 1.08996 * 109.47045 * 60.00069 * 1 2 3 30 30 H 1.08998 * 109.46852 * 239.99721 * 2 1 3 31 31 H 1.09004 * 109.46784 * 119.99665 * 2 1 3 32 32 H 1.08997 * 110.24273 * 77.99023 * 4 3 2 33 33 H 1.09004 * 110.31545 * 316.03375 * 4 3 2 34 34 H 0.96996 * 120.00772 * 359.97438 * 9 7 5 35 35 H 1.09002 * 109.47068 * 299.99729 * 10 9 7 36 36 H 1.09001 * 109.47372 * 59.99816 * 10 9 7 37 37 H 1.08998 * 114.20070 * 332.74502 * 13 11 10 38 38 H 1.09010 * 114.20272 * 105.56314 * 13 11 10 39 39 H 1.09004 * 113.46819 * 271.28784 * 14 13 11 40 40 H 1.09000 * 113.46326 * 140.84895 * 14 13 11 41 41 H 0.97003 * 120.00561 * 179.97438 * 19 18 16 42 42 H 1.08998 * 110.48541 * 143.47523 * 24 5 4 43 43 H 1.08999 * 110.48143 * 266.11957 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2944 2.1620 1.2116 5 6 2.3535 3.6345 0.7485 6 1 1.3790 4.1132 0.8450 7 6 3.4044 4.3983 1.5123 8 8 4.0646 3.8376 2.3611 9 7 3.6098 5.7048 1.2526 10 6 4.6311 6.4474 1.9955 11 6 4.6604 7.8982 1.5106 12 1 4.8278 7.9802 0.4366 13 6 5.5780 8.8031 2.3445 14 6 4.4528 9.8276 2.1435 15 7 3.5231 8.6987 1.9887 16 6 2.1866 8.4861 2.1984 17 1 1.7547 7.5182 1.9911 18 6 1.3869 9.5148 2.6769 19 7 1.9132 10.6945 2.9297 20 14 -0.4360 9.2247 2.9636 21 1 -0.6487 8.7469 4.3534 22 1 -1.1778 10.4946 2.7578 23 1 -0.9309 8.2019 2.0074 24 6 2.7513 3.4818 -0.7380 25 6 2.2716 2.0961 -1.1099 26 8 2.1355 1.6893 -2.2443 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 3.2499 1.8636 1.6430 33 1 1.4941 2.0272 1.9393 34 1 3.0816 6.1534 0.5740 35 1 4.3952 6.4243 3.0594 36 1 5.6062 5.9895 1.8295 37 1 5.7076 8.4783 3.3768 38 1 6.5145 9.0654 1.8521 39 1 4.5656 10.4243 1.2382 40 1 4.2554 10.4345 3.0271 41 1 1.3543 11.4135 3.2637 42 1 2.2503 4.2349 -1.3462 43 1 3.8327 3.5548 -0.8529 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038309948.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:34:30 Heat of formation + Delta-G solvation = -36.841463 kcal Electronic energy + Delta-G solvation = -24122.895638 eV Core-core repulsion = 20589.978811 eV Total energy + Delta-G solvation = -3532.916827 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.88745 -40.51621 -39.64026 -37.44656 -35.50812 -34.87834 -34.18612 -31.00848 -29.91527 -29.09996 -28.65069 -25.35714 -25.07476 -23.94535 -23.08352 -21.35827 -20.81039 -20.42830 -18.87889 -18.21009 -17.99893 -17.07729 -17.01608 -16.87544 -16.24532 -16.08179 -15.69127 -15.24343 -15.06586 -14.93290 -14.71148 -14.48974 -14.22025 -14.10364 -13.50238 -13.32529 -13.27828 -12.92271 -12.87718 -12.69393 -12.57614 -12.51723 -12.40441 -12.26199 -12.02828 -11.80594 -11.59942 -11.27156 -11.02333 -10.82153 -10.66195 -9.97791 -9.79276 -8.85511 -7.83562 -5.15208 1.43894 1.47655 1.48907 1.56208 1.58725 1.89197 2.26018 2.50782 3.17021 3.32030 3.39734 3.48845 3.74503 3.85034 3.97835 4.09334 4.14827 4.23254 4.24962 4.40053 4.46297 4.53631 4.57780 4.69448 4.73187 4.75035 4.81509 4.91749 4.92791 4.93114 5.09053 5.15390 5.25650 5.37202 5.49034 5.52334 5.62832 5.78173 6.00369 6.00958 6.57842 6.96824 7.04317 7.22969 7.68723 8.68188 9.34333 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.016476 B = 0.003940 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.047177 B = 7104.254032 C = 8102.916306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.114 3.886 3 N -0.615 5.615 4 C 0.120 3.880 5 C -0.116 4.116 6 H 0.135 0.865 7 C 0.526 3.474 8 O -0.576 6.576 9 N -0.707 5.707 10 C 0.130 3.870 11 C 0.134 3.866 12 H 0.070 0.930 13 C -0.136 4.136 14 C 0.141 3.859 15 N -0.629 5.629 16 C -0.204 4.204 17 H 0.094 0.906 18 C -0.073 4.073 19 N -0.956 5.956 20 Si 0.966 3.034 21 H -0.293 1.293 22 H -0.302 1.302 23 H -0.261 1.261 24 C -0.136 4.136 25 C 0.514 3.486 26 O -0.575 6.575 27 H 0.086 0.914 28 H 0.064 0.936 29 H 0.038 0.962 30 H 0.072 0.928 31 H 0.104 0.896 32 H 0.085 0.915 33 H 0.102 0.898 34 H 0.410 0.590 35 H 0.044 0.956 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.097 0.903 39 H 0.021 0.979 40 H 0.033 0.967 41 H 0.243 0.757 42 H 0.126 0.874 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.224 -17.098 -4.683 17.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.007 4.007 3 N -0.347 5.347 4 C -0.002 4.002 5 C -0.138 4.138 6 H 0.153 0.847 7 C 0.312 3.688 8 O -0.457 6.457 9 N -0.357 5.357 10 C 0.005 3.995 11 C 0.028 3.972 12 H 0.087 0.913 13 C -0.175 4.175 14 C 0.015 3.985 15 N -0.355 5.355 16 C -0.332 4.332 17 H 0.111 0.889 18 C -0.265 4.265 19 N -0.606 5.606 20 Si 0.796 3.204 21 H -0.221 1.221 22 H -0.229 1.229 23 H -0.186 1.186 24 C -0.176 4.176 25 C 0.303 3.697 26 O -0.455 6.455 27 H 0.105 0.895 28 H 0.083 0.917 29 H 0.057 0.943 30 H 0.091 0.909 31 H 0.122 0.878 32 H 0.103 0.897 33 H 0.121 0.879 34 H 0.246 0.754 35 H 0.063 0.937 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.116 0.884 39 H 0.039 0.961 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.144 0.856 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 2.258 -17.722 -4.567 18.439 hybrid contribution -1.389 0.806 0.003 1.606 sum 0.869 -16.916 -4.564 17.543 Atomic orbital electron populations 1.22115 0.94924 1.03384 1.01801 1.21556 0.95034 0.80124 1.03941 1.48508 1.64690 1.14589 1.06960 1.22000 1.03800 0.87686 0.86757 1.22194 1.00257 0.96512 0.94791 0.84725 1.20357 0.83623 0.82093 0.82702 1.90677 1.50342 1.69377 1.35286 1.45924 1.39296 1.09662 1.40769 1.21603 0.91221 0.91228 0.95409 1.22550 0.87149 0.90066 0.97448 0.91286 1.23486 0.96937 0.96768 1.00288 1.22040 0.86972 0.91737 0.97730 1.46001 1.03790 1.10362 1.75321 1.19265 0.82584 0.96628 1.34758 0.88855 1.25538 1.01773 0.95915 1.03315 1.70017 1.35313 1.02846 1.52432 0.85249 0.80751 0.76578 0.77851 1.22107 1.22947 1.18569 1.22316 1.04735 0.95650 0.94930 1.21128 0.76000 0.88464 0.84140 1.90698 1.55675 1.76490 1.22660 0.89531 0.91703 0.94264 0.90927 0.87802 0.89701 0.87938 0.75438 0.93715 0.90124 0.90258 0.88429 0.96149 0.94798 0.94760 0.85579 0.86855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 10.24 71.98 0.74 -1.57 16 2 C 0.11 1.79 6.65 86.38 0.57 2.36 16 3 N -0.61 -11.99 2.93 -817.98 -2.40 -14.39 16 4 C 0.12 2.17 6.71 86.83 0.58 2.75 16 5 C -0.12 -2.22 3.54 -10.48 -0.04 -2.26 16 6 H 0.13 2.22 8.14 -2.39 -0.02 2.20 16 7 C 0.53 13.77 7.06 87.66 0.62 14.39 16 8 O -0.58 -18.84 15.50 -3.03 -0.05 -18.89 16 9 N -0.71 -19.24 5.33 -463.06 -2.47 -21.71 16 10 C 0.13 3.99 5.52 86.38 0.48 4.47 16 11 C 0.13 4.49 4.10 41.79 0.17 4.66 16 12 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 13 C -0.14 -4.39 8.03 30.93 0.25 -4.14 16 14 C 0.14 6.20 7.39 83.18 0.61 6.81 16 15 N -0.63 -28.60 3.65 -713.88 -2.61 -31.21 16 16 C -0.20 -10.26 10.55 84.03 0.89 -9.38 16 17 H 0.09 4.31 7.50 -2.91 -0.02 4.28 16 18 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 19 N -0.96 -56.20 11.51 21.65 0.25 -55.95 16 20 Si 0.97 43.75 29.55 68.60 2.03 45.78 16 21 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 22 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 23 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 24 C -0.14 -2.55 6.41 30.59 0.20 -2.35 16 25 C 0.51 12.36 8.02 87.89 0.71 13.06 16 26 O -0.57 -18.32 17.59 -3.04 -0.05 -18.37 16 27 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.04 0.71 8.14 -2.39 -0.02 0.70 16 30 H 0.07 1.29 7.92 -2.39 -0.02 1.27 16 31 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.08 1.74 6.96 -2.39 -0.02 1.73 16 33 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 34 H 0.41 10.45 8.37 -92.71 -0.78 9.68 16 35 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.08 2.59 8.12 -2.39 -0.02 2.57 16 38 H 0.10 2.44 8.14 -2.38 -0.02 2.42 16 39 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.03 1.73 7.12 -2.39 -0.02 1.72 16 41 H 0.24 14.14 8.31 -92.71 -0.77 13.37 16 42 H 0.13 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.11 2.06 7.89 -2.39 -0.02 2.04 16 Total: -1.00 -71.74 357.03 1.17 -70.56 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: 0.23 Total: 18.86 kcal Atomic # 6 Polarization: 19.08 SS G_CDS: 6.24 Total: 25.32 kcal Atomic # 7 Polarization: -116.04 SS G_CDS: -7.23 Total: -123.27 kcal Atomic # 8 Polarization: -37.16 SS G_CDS: -0.10 Total: -37.26 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -71.74 1.17 -70.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038309948.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.722 kcal (2) G-P(sol) polarization free energy of solvation -71.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds