Wall clock time and date at job start Tue Mar 31 2020 04:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.88909 * 2 1 4 4 C 1.54915 * 111.03575 * 236.09333 * 2 1 3 5 5 N 1.47418 * 104.83107 * 204.90180 * 4 2 1 6 6 C 1.34773 * 125.64700 * 204.07770 * 5 4 2 7 7 O 1.21281 * 120.00184 * 0.03985 * 6 5 4 8 8 C 1.50703 * 119.99892 * 180.02562 * 6 5 4 9 9 N 1.46499 * 109.47303 * 180.02562 * 8 6 5 10 10 C 1.46758 * 124.35373 * 89.99550 * 9 8 6 11 11 C 1.54480 * 105.48068 * 197.01764 * 10 9 8 12 12 C 1.54631 * 101.76404 * 334.59012 * 11 10 9 13 13 C 1.34431 * 124.34912 * 269.70476 * 9 8 6 14 14 O 1.21280 * 124.93674 * 359.56960 * 13 9 8 15 15 C 1.47029 * 108.70495 * 24.13113 * 5 4 2 16 16 C 1.54327 * 107.26790 * 358.93814 * 15 5 4 17 17 H 1.08998 * 110.86741 * 219.36876 * 16 15 5 18 18 N 1.46503 * 110.71839 * 96.17284 * 16 15 5 19 19 C 1.36931 * 120.00202 * 91.47458 * 18 16 15 20 20 H 1.08004 * 119.99589 * 0.02562 * 19 18 16 21 21 C 1.38809 * 120.00349 * 179.97438 * 19 18 16 22 22 N 1.31621 * 119.99947 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00285 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47083 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.46956 * 120.00247 * 23 21 19 26 26 H 1.48497 * 109.47499 * 240.00407 * 23 21 19 27 27 H 1.09000 * 109.47012 * 299.30079 * 1 2 3 28 28 H 1.08999 * 109.46864 * 59.29373 * 1 2 3 29 29 H 1.08992 * 109.47148 * 179.30130 * 1 2 3 30 30 H 1.08995 * 110.36257 * 323.74454 * 4 2 1 31 31 H 1.08997 * 110.36405 * 86.06173 * 4 2 1 32 32 H 1.08998 * 109.47386 * 300.00642 * 8 6 5 33 33 H 1.09005 * 109.47318 * 60.00520 * 8 6 5 34 34 H 1.08999 * 110.24912 * 316.02785 * 10 9 8 35 35 H 1.09007 * 110.24217 * 77.93333 * 10 9 8 36 36 H 1.09003 * 110.96612 * 92.69888 * 11 10 9 37 37 H 1.08998 * 110.97468 * 216.43175 * 11 10 9 38 38 H 1.09000 * 110.48900 * 143.47105 * 12 11 10 39 39 H 1.08992 * 110.48382 * 265.98557 * 12 11 10 40 40 H 1.08993 * 109.88066 * 239.51797 * 15 5 4 41 41 H 1.08996 * 110.00664 * 118.42784 * 15 5 4 42 42 H 0.96996 * 119.99702 * 271.47318 * 18 16 15 43 43 H 0.96993 * 120.00128 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0184 0.0000 4 6 2.0861 -0.8066 -1.2000 5 7 3.4280 -1.2422 -0.7725 6 6 4.4488 -1.5606 -1.5928 7 8 4.3024 -1.4992 -2.7952 8 6 5.7723 -1.9927 -1.0160 9 7 6.7091 -2.2803 -2.1050 10 6 7.6091 -1.2894 -2.7066 11 6 8.0605 -1.9043 -4.0499 12 6 7.8990 -3.4172 -3.7742 13 6 6.8589 -3.4872 -2.6778 14 8 6.2471 -4.4861 -2.3632 15 6 3.4678 -1.2731 0.6969 16 6 2.0861 -0.8075 1.2025 17 1 2.1886 -0.1701 2.0808 18 7 1.2272 -1.9574 1.4964 19 6 1.2060 -2.4917 2.7570 20 1 1.8222 -2.0651 3.5347 21 6 0.3919 -3.5809 3.0356 22 7 -0.3594 -4.1005 2.0879 23 14 0.3635 -4.3103 4.7551 24 1 1.2914 -3.5503 5.6305 25 1 -1.0136 -4.2284 5.3048 26 1 0.7896 -5.7316 4.6970 27 1 -0.3633 0.5029 0.8962 28 1 -0.3633 0.5248 -0.8836 29 1 -0.3633 -1.0275 -0.0125 30 1 1.4531 -1.6706 -1.4022 31 1 2.1567 -0.1721 -2.0834 32 1 6.1748 -1.1946 -0.3922 33 1 5.6303 -2.8891 -0.4123 34 1 7.0780 -0.3534 -2.8797 35 1 8.4699 -1.1199 -2.0597 36 1 7.4095 -1.5845 -4.8636 37 1 9.0999 -1.6549 -4.2635 38 1 7.5497 -3.9329 -4.6687 39 1 8.8410 -3.8452 -3.4316 40 1 4.2425 -0.5984 1.0609 41 1 3.6669 -2.2872 1.0433 42 1 0.6736 -2.3402 0.7980 43 1 -0.9280 -4.8618 2.2825 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054373304.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:22 Heat of formation + Delta-G solvation = -71.313107 kcal Electronic energy + Delta-G solvation = -24453.475320 eV Core-core repulsion = 20919.063691 eV Total energy + Delta-G solvation = -3534.411629 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.70774 -40.78319 -38.97434 -37.45006 -35.71673 -34.21284 -33.57749 -32.23916 -29.42285 -29.09890 -28.48525 -26.73057 -25.75740 -23.61206 -22.78269 -21.19004 -20.73079 -19.96031 -19.43638 -18.37238 -17.81246 -17.45710 -17.10821 -16.58792 -16.31707 -16.10953 -15.75065 -15.33434 -14.78417 -14.73544 -14.59946 -14.48838 -14.26014 -13.87165 -13.53334 -13.42371 -13.32786 -13.05403 -13.03843 -12.88555 -12.81668 -12.34373 -12.31101 -12.08099 -11.98805 -11.90154 -11.46679 -11.43073 -11.22245 -10.97091 -10.95215 -9.80073 -9.68225 -9.01945 -7.92796 -5.21298 1.34923 1.48721 1.49708 1.50465 1.58943 1.83629 2.23913 2.57392 3.38307 3.39526 3.40312 3.62687 3.77716 3.89122 3.91860 4.05717 4.08032 4.09072 4.20138 4.26784 4.41235 4.58590 4.63332 4.65703 4.70123 4.71118 4.86076 4.86511 4.96311 5.00046 5.07654 5.17656 5.22551 5.24490 5.32408 5.42456 5.54441 5.60338 6.05874 6.28464 6.49392 6.99545 7.10200 7.35579 8.10556 8.32108 9.30971 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.018256 B = 0.003915 C = 0.003469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.345567 B = 7149.798026 C = 8070.570006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.097 4.097 3 H 0.115 0.885 4 C 0.114 3.886 5 N -0.607 5.607 6 C 0.502 3.498 7 O -0.583 6.583 8 C 0.114 3.886 9 N -0.607 5.607 10 C 0.098 3.902 11 C -0.118 4.118 12 C -0.145 4.145 13 C 0.498 3.502 14 O -0.594 6.594 15 C 0.076 3.924 16 C 0.161 3.839 17 H 0.092 0.908 18 N -0.725 5.725 19 C -0.233 4.233 20 H 0.088 0.912 21 C -0.077 4.077 22 N -0.972 5.972 23 Si 0.968 3.032 24 H -0.258 1.258 25 H -0.298 1.298 26 H -0.303 1.303 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.033 0.967 30 H 0.035 0.965 31 H 0.077 0.923 32 H 0.153 0.847 33 H 0.096 0.904 34 H 0.079 0.921 35 H 0.108 0.892 36 H 0.074 0.926 37 H 0.131 0.869 38 H 0.100 0.900 39 H 0.130 0.870 40 H 0.104 0.896 41 H 0.051 0.949 42 H 0.372 0.628 43 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.085 13.195 -8.112 24.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.117 4.117 3 H 0.134 0.866 4 C -0.008 4.008 5 N -0.340 5.340 6 C 0.290 3.710 7 O -0.464 6.464 8 C -0.012 4.012 9 N -0.339 5.339 10 C -0.023 4.023 11 C -0.156 4.156 12 C -0.185 4.185 13 C 0.288 3.712 14 O -0.475 6.475 15 C -0.049 4.049 16 C 0.051 3.949 17 H 0.109 0.891 18 N -0.364 5.364 19 C -0.364 4.364 20 H 0.105 0.895 21 C -0.269 4.269 22 N -0.623 5.623 23 Si 0.798 3.202 24 H -0.182 1.182 25 H -0.225 1.225 26 H -0.231 1.231 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.095 0.905 32 H 0.170 0.830 33 H 0.114 0.886 34 H 0.097 0.903 35 H 0.126 0.874 36 H 0.093 0.907 37 H 0.149 0.851 38 H 0.118 0.882 39 H 0.148 0.852 40 H 0.122 0.878 41 H 0.069 0.931 42 H 0.205 0.795 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 18.770 12.712 -8.358 24.162 hybrid contribution -1.166 -1.399 0.600 1.917 sum 17.604 11.313 -7.759 22.318 Atomic orbital electron populations 1.21473 0.93777 1.01217 1.01909 1.22605 0.96542 0.99450 0.93099 0.86647 1.22212 0.82718 0.97439 0.98479 1.48569 1.11822 1.65369 1.08237 1.21420 0.86592 0.76673 0.86291 1.90634 1.84113 1.55436 1.16181 1.21221 0.85992 1.04422 0.89545 1.48115 1.38149 1.11517 1.36092 1.22455 0.93178 0.91361 0.95319 1.22631 1.05021 0.91730 0.96185 1.22353 0.98786 1.00363 0.96952 1.22029 0.83375 0.82172 0.83629 1.90713 1.52744 1.36090 1.67959 1.23195 1.01911 1.01823 0.77967 1.21527 0.88178 0.88679 0.96526 0.89062 1.42663 1.49732 1.34388 1.09658 1.19736 1.18899 1.08901 0.88899 0.89460 1.25527 1.00229 1.00184 1.00952 1.69835 1.31851 1.26897 1.33728 0.85143 0.77061 0.77558 0.80425 1.18225 1.22514 1.23130 0.92074 0.91321 0.94764 0.94684 0.90512 0.82958 0.88623 0.90268 0.87386 0.90741 0.85088 0.88160 0.85178 0.87830 0.93077 0.79484 0.94386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.88 8.91 71.98 0.64 -3.24 16 2 C -0.10 -2.81 3.51 -9.40 -0.03 -2.84 16 3 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 4 C 0.11 3.81 6.33 86.86 0.55 4.36 16 5 N -0.61 -19.93 3.33 -811.80 -2.70 -22.63 16 6 C 0.50 16.97 7.92 87.66 0.69 17.66 16 7 O -0.58 -23.68 16.69 -3.03 -0.05 -23.73 16 8 C 0.11 2.96 5.61 85.63 0.48 3.44 16 9 N -0.61 -14.83 2.42 -822.30 -1.99 -16.82 16 10 C 0.10 1.33 7.35 86.83 0.64 1.97 16 11 C -0.12 -1.28 7.18 31.65 0.23 -1.05 16 12 C -0.14 -2.44 6.86 30.59 0.21 -2.23 16 13 C 0.50 14.77 8.02 87.90 0.71 15.47 16 14 O -0.59 -24.77 17.59 -3.03 -0.05 -24.82 16 15 C 0.08 2.32 6.23 86.73 0.54 2.86 16 16 C 0.16 5.47 3.39 46.18 0.16 5.63 16 17 H 0.09 2.83 8.09 -2.39 -0.02 2.81 16 18 N -0.73 -33.84 4.48 -317.33 -1.42 -35.26 16 19 C -0.23 -12.05 9.96 84.03 0.84 -11.21 16 20 H 0.09 4.19 7.83 -2.91 -0.02 4.17 16 21 C -0.08 -4.31 5.50 84.86 0.47 -3.84 16 22 N -0.97 -59.59 13.06 21.65 0.28 -59.31 16 23 Si 0.97 45.40 29.55 68.60 2.03 47.42 16 24 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 25 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 26 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 27 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.03 1.31 6.40 -2.39 -0.02 1.30 16 30 H 0.03 1.39 8.03 -2.39 -0.02 1.37 16 31 H 0.08 2.41 8.04 -2.39 -0.02 2.39 16 32 H 0.15 2.45 8.14 -2.39 -0.02 2.43 16 33 H 0.10 2.85 7.92 -2.38 -0.02 2.83 16 34 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.11 0.76 8.14 -2.38 -0.02 0.74 16 36 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.13 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.05 1.87 8.04 -2.39 -0.02 1.85 16 42 H 0.37 19.57 6.27 -92.71 -0.58 18.99 16 43 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -81.58 353.69 2.63 -78.95 By element: Atomic # 1 Polarization: 28.81 SS G_CDS: 0.42 Total: 29.23 kcal Atomic # 6 Polarization: 20.86 SS G_CDS: 6.11 Total: 26.97 kcal Atomic # 7 Polarization: -128.20 SS G_CDS: -5.83 Total: -134.03 kcal Atomic # 8 Polarization: -48.45 SS G_CDS: -0.10 Total: -48.55 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.42 kcal Total: -81.58 2.63 -78.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054373304.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.637 kcal (2) G-P(sol) polarization free energy of solvation -81.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds