Wall clock time and date at job start Tue Mar 31 2020 04:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.87304 * 2 1 4 4 C 1.54321 * 110.01649 * 121.09794 * 2 1 3 5 5 H 1.08996 * 110.72718 * 260.04782 * 4 2 1 6 6 N 1.46509 * 110.71582 * 23.32047 * 4 2 1 7 7 C 1.36937 * 119.99620 * 205.00230 * 6 4 2 8 8 H 1.08001 * 120.00286 * 359.97438 * 7 6 4 9 9 C 1.38818 * 119.99659 * 180.02562 * 7 6 4 10 10 N 1.31618 * 119.99955 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 119.99930 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47398 * 89.99903 * 11 9 7 13 13 H 1.48506 * 109.47218 * 209.99925 * 11 9 7 14 14 H 1.48507 * 109.47205 * 329.99798 * 11 9 7 15 15 C 1.55154 * 102.94356 * 141.67791 * 4 2 1 16 16 C 1.55125 * 101.48885 * 324.33846 * 15 4 2 17 17 N 1.47021 * 109.88410 * 238.98581 * 2 1 3 18 18 C 1.34783 * 125.64762 * 61.44553 * 17 2 1 19 19 O 1.21284 * 119.99788 * 5.09789 * 18 17 2 20 20 C 1.50698 * 120.00203 * 185.09276 * 18 17 2 21 21 H 1.09005 * 109.39813 * 334.50387 * 20 18 17 22 22 C 1.53066 * 109.40228 * 214.67292 * 20 18 17 23 23 C 1.53353 * 108.45335 * 190.95192 * 22 20 18 24 24 C 1.52978 * 108.64604 * 67.49705 * 23 22 20 25 25 N 1.45758 * 110.51586 * 309.30168 * 24 23 22 26 26 C 1.33347 * 124.10490 * 19.03770 * 25 24 23 27 27 O 1.21292 * 118.24289 * 177.77250 * 26 25 24 28 28 H 1.08996 * 109.46854 * 179.56300 * 1 2 3 29 29 H 1.09007 * 109.46832 * 299.55838 * 1 2 3 30 30 H 1.08997 * 109.47081 * 59.56136 * 1 2 3 31 31 H 0.96998 * 119.99917 * 24.99806 * 6 4 2 32 32 H 0.97000 * 120.00292 * 180.02562 * 10 9 7 33 33 H 1.09006 * 111.00318 * 82.58082 * 15 4 2 34 34 H 1.08997 * 111.00684 * 206.38484 * 15 4 2 35 35 H 1.09000 * 110.49617 * 278.44856 * 16 15 4 36 36 H 1.08998 * 110.34058 * 156.05729 * 16 15 4 37 37 H 1.08998 * 109.67525 * 310.70403 * 22 20 18 38 38 H 1.09003 * 109.67252 * 71.20336 * 22 20 18 39 39 H 1.09002 * 109.60215 * 187.30411 * 23 22 20 40 40 H 1.08998 * 109.60353 * 307.79331 * 23 22 20 41 41 H 1.08998 * 109.29892 * 188.97589 * 24 23 22 42 42 H 1.08990 * 109.10459 * 69.50898 * 24 23 22 43 43 H 0.96997 * 117.94545 * 199.05475 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0582 -0.7489 1.2416 5 1 2.3558 -0.0452 2.0189 6 7 1.0532 -1.6874 1.7472 7 6 1.0693 -2.0642 3.0636 8 1 1.8230 -1.6699 3.7290 9 6 0.1174 -2.9539 3.5426 10 7 -0.8009 -3.4348 2.7315 11 14 0.1397 -3.4684 5.3381 12 1 -0.6966 -2.5325 6.1317 13 1 -0.4017 -4.8454 5.4652 14 1 1.5353 -3.4365 5.8449 15 6 3.2918 -1.5107 0.6892 16 6 2.8130 -1.8793 -0.7395 17 7 2.0300 -0.7124 -1.1849 18 6 1.8049 -0.3602 -2.4663 19 8 1.2174 0.6707 -2.7176 20 6 2.2831 -1.2473 -3.5867 21 1 3.1323 -1.8382 -3.2434 22 6 2.7129 -0.3809 -4.7731 23 6 2.9314 -1.2931 -5.9864 24 6 1.5803 -1.8675 -6.4161 25 7 0.8863 -2.4498 -5.2742 26 6 1.1723 -2.1684 -4.0025 27 8 0.4990 -2.6838 -3.1352 28 1 -0.3633 -1.0276 -0.0078 29 1 -0.3633 0.5070 0.8940 30 1 -0.3633 0.5206 -0.8860 31 1 0.3764 -2.0418 1.1495 32 1 -1.4663 -4.0562 3.0662 33 1 4.1682 -0.8634 0.6564 34 1 3.4926 -2.4070 1.2761 35 1 2.1853 -2.7700 -0.7137 36 1 3.6681 -2.0358 -1.3971 37 1 1.9334 0.3473 -4.9972 38 1 3.6409 0.1375 -4.5319 39 1 3.3617 -0.7160 -6.8049 40 1 3.6047 -2.1065 -5.7157 41 1 1.7399 -2.6371 -7.1713 42 1 0.9712 -1.0687 -6.8389 43 1 0.1718 -3.0816 -5.4504 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074697062.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:04:17 Heat of formation + Delta-G solvation = -52.707441 kcal Electronic energy + Delta-G solvation = -25171.479680 eV Core-core repulsion = 21637.874853 eV Total energy + Delta-G solvation = -3533.604827 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.92997 -39.32497 -37.38591 -36.54342 -33.93280 -33.23747 -31.52487 -30.72966 -30.02746 -28.62320 -25.26595 -25.12886 -23.46917 -22.99480 -22.35746 -20.25771 -19.03964 -18.46860 -17.57894 -17.34455 -16.80081 -16.62136 -15.82122 -15.27172 -14.56613 -14.47549 -14.26269 -14.19022 -13.75820 -13.73886 -13.45809 -13.16234 -12.83662 -12.54966 -12.20894 -12.03408 -11.69972 -11.62060 -11.59158 -11.33376 -11.14099 -10.92645 -10.83728 -10.68280 -10.55657 -10.17100 -9.98563 -9.85963 -9.55237 -9.47050 -9.23320 -8.89839 -8.21853 -6.95759 -5.74140 -3.04255 2.40953 2.72022 3.24975 3.36448 3.44992 3.49902 3.51934 4.32397 4.41471 4.42763 4.48852 4.60035 4.82505 4.99734 5.04440 5.14253 5.24921 5.35707 5.42436 5.49778 5.53624 5.63635 5.65926 5.71978 5.85522 5.91813 5.95370 6.11501 6.20063 6.44340 6.50457 6.59996 6.62524 6.69182 6.80712 6.93813 7.12199 7.15197 7.71765 7.89359 8.11504 8.40163 8.43648 9.54876 10.11404 10.46527 11.47716 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.025982 B = 0.004035 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.405012 B = 6936.865460 C = 7306.024100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.127 3.873 3 H 0.070 0.930 4 C 0.173 3.827 5 H 0.070 0.930 6 N -0.713 5.713 7 C -0.245 4.245 8 H 0.071 0.929 9 C -0.009 4.009 10 N -0.928 5.928 11 Si 0.906 3.094 12 H -0.290 1.290 13 H -0.292 1.292 14 H -0.282 1.282 15 C -0.160 4.160 16 C 0.104 3.896 17 N -0.594 5.594 18 C 0.549 3.451 19 O -0.544 6.544 20 C -0.124 4.124 21 H 0.120 0.880 22 C -0.110 4.110 23 C -0.136 4.136 24 C 0.109 3.891 25 N -0.720 5.720 26 C 0.530 3.470 27 O -0.526 6.526 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.049 0.951 31 H 0.390 0.610 32 H 0.256 0.744 33 H 0.061 0.939 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.060 0.940 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.067 0.933 43 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.433 4.015 -19.124 22.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.023 3.977 3 H 0.088 0.912 4 C 0.060 3.940 5 H 0.088 0.912 6 N -0.355 5.355 7 C -0.376 4.376 8 H 0.089 0.911 9 C -0.206 4.206 10 N -0.575 5.575 11 Si 0.738 3.262 12 H -0.218 1.218 13 H -0.219 1.219 14 H -0.208 1.208 15 C -0.201 4.201 16 C -0.018 4.018 17 N -0.326 5.326 18 C 0.335 3.665 19 O -0.422 6.422 20 C -0.148 4.148 21 H 0.137 0.863 22 C -0.149 4.149 23 C -0.174 4.174 24 C -0.016 4.016 25 N -0.374 5.374 26 C 0.315 3.685 27 O -0.401 6.401 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.227 0.773 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.106 0.894 35 H 0.096 0.904 36 H 0.079 0.921 37 H 0.106 0.894 38 H 0.098 0.902 39 H 0.107 0.893 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.085 0.915 43 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 9.930 4.426 -18.607 21.550 hybrid contribution -0.401 -0.901 0.579 1.143 sum 9.529 3.525 -18.029 20.694 Atomic orbital electron populations 1.21889 0.94181 1.03223 1.01241 1.22034 0.95534 0.95521 0.84589 0.91166 1.21180 0.89123 0.91647 0.92014 0.91202 1.42582 1.32838 1.51145 1.08940 1.19236 1.10955 1.21223 0.86202 0.91066 1.24755 0.97984 1.00066 0.97790 1.69680 1.18432 1.35273 1.34118 0.86209 0.77384 0.77654 0.84995 1.21750 1.21859 1.20772 1.23567 0.99221 1.02362 0.94949 1.22393 0.94164 0.89305 0.95962 1.48509 1.51264 1.28120 1.04688 1.19221 0.79608 0.85525 0.82129 1.90663 1.42688 1.25616 1.83248 1.21396 0.99000 0.97596 0.96805 0.86262 1.21596 1.03352 0.97703 0.92201 1.21912 0.96630 0.99957 0.98889 1.21413 0.93666 0.98479 0.87993 1.45359 1.39039 1.47608 1.05414 1.19451 0.84765 0.81673 0.82612 1.90904 1.49485 1.51419 1.48306 0.91252 0.91551 0.93151 0.77305 0.93435 0.92071 0.89409 0.90394 0.92148 0.89410 0.90185 0.89264 0.90782 0.90418 0.91488 0.76194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 8.52 37.16 0.32 -2.76 16 2 C 0.13 2.40 3.39 -66.96 -0.23 2.17 16 3 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 4 C 0.17 3.42 3.48 -66.09 -0.23 3.19 16 5 H 0.07 1.35 8.09 -51.93 -0.42 0.93 16 6 N -0.71 -17.67 4.55 -51.65 -0.23 -17.90 16 7 C -0.25 -6.67 9.96 -15.06 -0.15 -6.82 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 10 N -0.93 -28.30 13.06 55.49 0.72 -27.58 16 11 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 15 C -0.16 -2.68 6.78 -24.47 -0.17 -2.85 16 16 C 0.10 1.71 6.54 -2.41 -0.02 1.69 16 17 N -0.59 -10.48 3.06 -162.89 -0.50 -10.98 16 18 C 0.55 9.48 6.13 -10.98 -0.07 9.41 16 19 O -0.54 -10.78 15.27 5.55 0.08 -10.70 16 20 C -0.12 -1.61 2.46 -93.14 -0.23 -1.84 16 21 H 0.12 1.33 6.37 -51.93 -0.33 1.00 16 22 C -0.11 -1.05 5.16 -26.51 -0.14 -1.19 16 23 C -0.14 -0.84 6.03 -26.56 -0.16 -1.00 16 24 C 0.11 0.71 7.17 -4.45 -0.03 0.67 16 25 N -0.72 -7.49 5.45 -61.36 -0.33 -7.83 16 26 C 0.53 7.77 7.28 -11.87 -0.09 7.69 16 27 O -0.53 -10.37 17.20 5.55 0.10 -10.28 16 28 H 0.07 1.65 6.21 -51.93 -0.32 1.33 16 29 H 0.07 1.37 8.14 -51.92 -0.42 0.95 16 30 H 0.05 1.06 7.04 -51.93 -0.37 0.69 16 31 H 0.39 10.63 5.69 -40.82 -0.23 10.40 16 32 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 35 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 36 H 0.06 0.77 6.85 -51.93 -0.36 0.42 16 37 H 0.09 0.98 7.46 -51.93 -0.39 0.60 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 41 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.40 3.83 8.80 -40.82 -0.36 3.47 16 LS Contribution 341.93 15.07 5.15 5.15 Total: -1.00 -34.87 341.93 -7.86 -42.73 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -6.55 Total: 12.09 kcal Atomic # 6 Polarization: 9.27 SS G_CDS: -1.28 Total: 7.99 kcal Atomic # 7 Polarization: -63.95 SS G_CDS: -0.34 Total: -64.29 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: 0.18 Total: -20.97 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.87 -7.86 -42.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074697062.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.976 kcal (2) G-P(sol) polarization free energy of solvation -34.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds