Wall clock time and date at job start Tue Mar 31 2020 04:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.87304 * 2 1 4 4 C 1.54321 * 110.01649 * 121.09794 * 2 1 3 5 5 H 1.08996 * 110.72718 * 260.04782 * 4 2 1 6 6 N 1.46509 * 110.71582 * 23.32047 * 4 2 1 7 7 C 1.36937 * 119.99620 * 205.00230 * 6 4 2 8 8 H 1.08001 * 120.00286 * 359.97438 * 7 6 4 9 9 C 1.38818 * 119.99659 * 180.02562 * 7 6 4 10 10 N 1.31618 * 119.99955 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 119.99930 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47398 * 89.99903 * 11 9 7 13 13 H 1.48506 * 109.47218 * 209.99925 * 11 9 7 14 14 H 1.48507 * 109.47205 * 329.99798 * 11 9 7 15 15 C 1.55154 * 102.94356 * 141.67791 * 4 2 1 16 16 C 1.55125 * 101.48885 * 324.33846 * 15 4 2 17 17 N 1.47021 * 109.88410 * 238.98581 * 2 1 3 18 18 C 1.34783 * 125.64762 * 61.44553 * 17 2 1 19 19 O 1.21284 * 119.99788 * 5.09789 * 18 17 2 20 20 C 1.50698 * 120.00203 * 185.09276 * 18 17 2 21 21 H 1.09005 * 109.39813 * 334.50387 * 20 18 17 22 22 C 1.53066 * 109.40228 * 214.67292 * 20 18 17 23 23 C 1.53353 * 108.45335 * 190.95192 * 22 20 18 24 24 C 1.52978 * 108.64604 * 67.49705 * 23 22 20 25 25 N 1.45758 * 110.51586 * 309.30168 * 24 23 22 26 26 C 1.33347 * 124.10490 * 19.03770 * 25 24 23 27 27 O 1.21292 * 118.24289 * 177.77250 * 26 25 24 28 28 H 1.08996 * 109.46854 * 179.56300 * 1 2 3 29 29 H 1.09007 * 109.46832 * 299.55838 * 1 2 3 30 30 H 1.08997 * 109.47081 * 59.56136 * 1 2 3 31 31 H 0.96998 * 119.99917 * 24.99806 * 6 4 2 32 32 H 0.97000 * 120.00292 * 180.02562 * 10 9 7 33 33 H 1.09006 * 111.00318 * 82.58082 * 15 4 2 34 34 H 1.08997 * 111.00684 * 206.38484 * 15 4 2 35 35 H 1.09000 * 110.49617 * 278.44856 * 16 15 4 36 36 H 1.08998 * 110.34058 * 156.05729 * 16 15 4 37 37 H 1.08998 * 109.67525 * 310.70403 * 22 20 18 38 38 H 1.09003 * 109.67252 * 71.20336 * 22 20 18 39 39 H 1.09002 * 109.60215 * 187.30411 * 23 22 20 40 40 H 1.08998 * 109.60353 * 307.79331 * 23 22 20 41 41 H 1.08998 * 109.29892 * 188.97589 * 24 23 22 42 42 H 1.08990 * 109.10459 * 69.50898 * 24 23 22 43 43 H 0.96997 * 117.94545 * 199.05475 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0582 -0.7489 1.2416 5 1 2.3558 -0.0452 2.0189 6 7 1.0532 -1.6874 1.7472 7 6 1.0693 -2.0642 3.0636 8 1 1.8230 -1.6699 3.7290 9 6 0.1174 -2.9539 3.5426 10 7 -0.8009 -3.4348 2.7315 11 14 0.1397 -3.4684 5.3381 12 1 -0.6966 -2.5325 6.1317 13 1 -0.4017 -4.8454 5.4652 14 1 1.5353 -3.4365 5.8449 15 6 3.2918 -1.5107 0.6892 16 6 2.8130 -1.8793 -0.7395 17 7 2.0300 -0.7124 -1.1849 18 6 1.8049 -0.3602 -2.4663 19 8 1.2174 0.6707 -2.7176 20 6 2.2831 -1.2473 -3.5867 21 1 3.1323 -1.8382 -3.2434 22 6 2.7129 -0.3809 -4.7731 23 6 2.9314 -1.2931 -5.9864 24 6 1.5803 -1.8675 -6.4161 25 7 0.8863 -2.4498 -5.2742 26 6 1.1723 -2.1684 -4.0025 27 8 0.4990 -2.6838 -3.1352 28 1 -0.3633 -1.0276 -0.0078 29 1 -0.3633 0.5070 0.8940 30 1 -0.3633 0.5206 -0.8860 31 1 0.3764 -2.0418 1.1495 32 1 -1.4663 -4.0562 3.0662 33 1 4.1682 -0.8634 0.6564 34 1 3.4926 -2.4070 1.2761 35 1 2.1853 -2.7700 -0.7137 36 1 3.6681 -2.0358 -1.3971 37 1 1.9334 0.3473 -4.9972 38 1 3.6409 0.1375 -4.5319 39 1 3.3617 -0.7160 -6.8049 40 1 3.6047 -2.1065 -5.7157 41 1 1.7399 -2.6371 -7.1713 42 1 0.9712 -1.0687 -6.8389 43 1 0.1718 -3.0816 -5.4504 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074697062.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:04:16 Heat of formation + Delta-G solvation = -79.269226 kcal Electronic energy + Delta-G solvation = -25172.631486 eV Core-core repulsion = 21637.874853 eV Total energy + Delta-G solvation = -3534.756633 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.08163 -40.63842 -38.84980 -37.49843 -35.75693 -34.27343 -33.23217 -32.25909 -31.15436 -30.19284 -26.79133 -26.20400 -25.39284 -23.99695 -23.54760 -21.53284 -20.31157 -19.64313 -19.40799 -18.50265 -18.12009 -17.78614 -17.15097 -16.48716 -16.22108 -15.81477 -15.58978 -15.32875 -15.12690 -14.87447 -14.71080 -14.39779 -14.27803 -14.14646 -13.81733 -13.25271 -12.99944 -12.98165 -12.89083 -12.64288 -12.44673 -12.33903 -12.27713 -12.23823 -12.05675 -11.90777 -11.65819 -11.45700 -11.02638 -10.91786 -10.78748 -10.10406 -9.66568 -8.99944 -7.90471 -5.20154 1.19475 1.48817 1.50724 1.54629 1.58993 2.03074 2.36502 2.58246 3.27115 3.41274 3.52239 3.64665 3.73769 3.83799 3.87520 3.94689 4.05344 4.18730 4.25776 4.32041 4.38351 4.53008 4.55677 4.69520 4.73685 4.77488 4.83902 4.90922 5.01462 5.04120 5.06667 5.20718 5.29354 5.33007 5.36757 5.44107 5.56802 5.77403 6.19860 6.29386 6.52770 7.02580 7.11067 7.35927 8.10569 8.34193 9.33081 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.025982 B = 0.004035 C = 0.003832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.405012 B = 6936.865460 C = 7306.024100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.130 3.870 3 H 0.089 0.911 4 C 0.162 3.838 5 H 0.081 0.919 6 N -0.727 5.727 7 C -0.236 4.236 8 H 0.085 0.915 9 C -0.077 4.077 10 N -0.973 5.973 11 Si 0.974 3.026 12 H -0.291 1.291 13 H -0.302 1.302 14 H -0.264 1.264 15 C -0.144 4.144 16 C 0.108 3.892 17 N -0.597 5.597 18 C 0.541 3.459 19 O -0.575 6.575 20 C -0.118 4.118 21 H 0.142 0.858 22 C -0.107 4.107 23 C -0.128 4.128 24 C 0.098 3.902 25 N -0.708 5.708 26 C 0.522 3.478 27 O -0.593 6.593 28 H 0.032 0.968 29 H 0.061 0.939 30 H 0.043 0.957 31 H 0.374 0.626 32 H 0.248 0.752 33 H 0.101 0.899 34 H 0.074 0.926 35 H 0.041 0.959 36 H 0.106 0.894 37 H 0.067 0.933 38 H 0.097 0.903 39 H 0.121 0.879 40 H 0.086 0.914 41 H 0.112 0.888 42 H 0.075 0.925 43 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.691 4.684 -20.749 25.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.026 3.974 3 H 0.107 0.893 4 C 0.052 3.948 5 H 0.098 0.902 6 N -0.367 5.367 7 C -0.367 4.367 8 H 0.103 0.897 9 C -0.269 4.269 10 N -0.624 5.624 11 Si 0.803 3.197 12 H -0.218 1.218 13 H -0.229 1.229 14 H -0.188 1.188 15 C -0.185 4.185 16 C -0.014 4.014 17 N -0.329 5.329 18 C 0.329 3.671 19 O -0.456 6.456 20 C -0.142 4.142 21 H 0.159 0.841 22 C -0.145 4.145 23 C -0.166 4.166 24 C -0.025 4.025 25 N -0.359 5.359 26 C 0.308 3.692 27 O -0.474 6.474 28 H 0.051 0.949 29 H 0.080 0.920 30 H 0.062 0.938 31 H 0.208 0.792 32 H 0.057 0.943 33 H 0.119 0.881 34 H 0.093 0.907 35 H 0.059 0.941 36 H 0.124 0.876 37 H 0.086 0.914 38 H 0.116 0.884 39 H 0.140 0.860 40 H 0.104 0.896 41 H 0.130 0.870 42 H 0.093 0.907 43 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 13.272 5.135 -20.300 24.791 hybrid contribution -1.409 -1.014 0.950 1.979 sum 11.863 4.120 -19.350 23.067 Atomic orbital electron populations 1.21708 0.96320 1.00488 1.00591 1.21907 0.93712 0.96562 0.85232 0.89339 1.21458 0.89293 0.91377 0.92648 0.90156 1.42746 1.33832 1.52034 1.08132 1.19696 1.10086 1.19659 0.87290 0.89723 1.25575 0.98296 1.01183 1.01854 1.69875 1.19734 1.36730 1.36065 0.85134 0.77994 0.76390 0.80175 1.21800 1.22869 1.18823 1.23416 0.98812 1.01897 0.94354 1.22383 0.94678 0.87420 0.96915 1.48595 1.51422 1.28168 1.04693 1.20024 0.78803 0.85594 0.82693 1.90636 1.43942 1.27233 1.83767 1.21458 0.98815 0.97370 0.96560 0.84067 1.21654 1.03285 0.97459 0.92090 1.21962 0.96511 0.99924 0.98173 1.21831 0.93855 0.99805 0.86964 1.45448 1.38656 1.46597 1.05195 1.19826 0.84683 0.81413 0.83317 1.90885 1.51936 1.54119 1.50454 0.94904 0.91982 0.93842 0.79225 0.94341 0.88085 0.90713 0.94071 0.87596 0.91435 0.88416 0.86045 0.89586 0.86986 0.90659 0.75871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.83 8.52 71.98 0.61 -5.21 16 2 C 0.13 4.90 3.39 45.34 0.15 5.06 16 3 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 4 C 0.16 6.33 3.48 46.18 0.16 6.49 16 5 H 0.08 2.97 8.09 -2.39 -0.02 2.95 16 6 N -0.73 -36.90 4.55 -317.32 -1.44 -38.34 16 7 C -0.24 -12.92 9.96 84.03 0.84 -12.09 16 8 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 9 C -0.08 -4.48 5.50 84.86 0.47 -4.02 16 10 N -0.97 -61.92 13.06 21.65 0.28 -61.64 16 11 Si 0.97 46.68 29.55 68.60 2.03 48.71 16 12 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 13 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 14 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 15 C -0.14 -4.55 6.78 32.06 0.22 -4.33 16 16 C 0.11 3.41 6.54 86.93 0.57 3.98 16 17 N -0.60 -20.82 3.06 -787.64 -2.41 -23.23 16 18 C 0.54 18.45 6.13 87.66 0.54 18.99 16 19 O -0.58 -22.93 15.27 -3.04 -0.05 -22.98 16 20 C -0.12 -2.90 2.46 -12.43 -0.03 -2.93 16 21 H 0.14 2.75 6.37 -2.38 -0.02 2.74 16 22 C -0.11 -1.73 5.16 30.73 0.16 -1.58 16 23 C -0.13 -1.02 6.03 30.71 0.19 -0.84 16 24 C 0.10 0.93 7.17 86.51 0.62 1.55 16 25 N -0.71 -13.77 5.45 -467.22 -2.55 -16.32 16 26 C 0.52 15.21 7.28 87.71 0.64 15.85 16 27 O -0.59 -24.54 17.20 -3.07 -0.05 -24.59 16 28 H 0.03 1.66 6.21 -2.39 -0.01 1.65 16 29 H 0.06 2.69 8.14 -2.38 -0.02 2.67 16 30 H 0.04 1.91 7.04 -2.39 -0.02 1.90 16 31 H 0.37 21.48 5.69 -92.71 -0.53 20.95 16 32 H 0.25 15.41 8.31 -92.71 -0.77 14.64 16 33 H 0.10 2.44 8.14 -2.38 -0.02 2.42 16 34 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.11 2.37 6.85 -2.39 -0.02 2.35 16 37 H 0.07 1.40 7.46 -2.39 -0.02 1.38 16 38 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 40 H 0.09 0.56 8.12 -2.39 -0.02 0.54 16 41 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 42 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.41 7.44 8.80 -92.71 -0.82 6.62 16 Total: -1.00 -81.42 341.93 0.62 -80.80 By element: Atomic # 1 Polarization: 36.99 SS G_CDS: -0.31 Total: 36.68 kcal Atomic # 6 Polarization: 15.80 SS G_CDS: 5.13 Total: 20.92 kcal Atomic # 7 Polarization: -133.41 SS G_CDS: -6.12 Total: -139.53 kcal Atomic # 8 Polarization: -47.47 SS G_CDS: -0.10 Total: -47.57 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -81.42 0.62 -80.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074697062.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.527 kcal (2) G-P(sol) polarization free energy of solvation -81.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds