Wall clock time and date at job start Tue Mar 31 2020 04:04:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.99233 * 2 1 4 4 C 1.54319 * 109.88012 * 121.09098 * 2 1 3 5 5 H 1.08995 * 110.72220 * 259.97595 * 4 2 1 6 6 N 1.46497 * 110.72069 * 23.25122 * 4 2 1 7 7 C 1.36936 * 120.00118 * 204.99679 * 6 4 2 8 8 H 1.08008 * 120.00014 * 359.97438 * 7 6 4 9 9 C 1.38814 * 120.00379 * 180.02562 * 7 6 4 10 10 N 1.31622 * 119.99670 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00241 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47061 * 59.99398 * 11 9 7 13 13 H 1.48497 * 109.47128 * 179.97438 * 11 9 7 14 14 H 1.48506 * 109.46766 * 299.99497 * 11 9 7 15 15 C 1.55159 * 102.93906 * 141.61385 * 4 2 1 16 16 C 1.55131 * 101.48367 * 324.33373 * 15 4 2 17 17 N 1.47019 * 109.88286 * 238.90385 * 2 1 3 18 18 C 1.34774 * 125.64908 * 61.60537 * 17 2 1 19 19 O 1.21278 * 120.00015 * 359.97438 * 18 17 2 20 20 C 1.50701 * 119.99968 * 179.97438 * 18 17 2 21 21 H 1.08999 * 109.74014 * 299.59417 * 20 18 17 22 22 C 1.52888 * 109.35342 * 179.32411 * 20 18 17 23 23 C 1.53069 * 108.34252 * 172.63598 * 22 20 18 24 24 C 1.50182 * 109.89088 * 48.87162 * 23 22 20 25 25 O 1.21275 * 118.24562 * 162.44137 * 24 23 22 26 26 N 1.33353 * 123.50537 * 342.41883 * 24 23 22 27 27 C 1.45752 * 124.10987 * 2.22390 * 26 24 23 28 28 H 1.08995 * 109.46670 * 179.64355 * 1 2 3 29 29 H 1.08993 * 109.47240 * 299.64485 * 1 2 3 30 30 H 1.09000 * 109.47229 * 59.64346 * 1 2 3 31 31 H 0.96999 * 120.00011 * 25.00062 * 6 4 2 32 32 H 0.96999 * 119.99842 * 180.02562 * 10 9 7 33 33 H 1.08998 * 111.00361 * 82.57635 * 15 4 2 34 34 H 1.09002 * 111.00111 * 206.38614 * 15 4 2 35 35 H 1.09004 * 110.49397 * 278.44677 * 16 15 4 36 36 H 1.09005 * 110.34136 * 156.06172 * 16 15 4 37 37 H 1.08996 * 109.74087 * 52.91293 * 22 20 18 38 38 H 1.08999 * 109.69280 * 292.33048 * 22 20 18 39 39 H 1.09000 * 109.40168 * 288.74730 * 23 22 20 40 40 H 1.08998 * 109.40079 * 168.99855 * 23 22 20 41 41 H 0.97006 * 117.94502 * 182.19872 * 26 24 23 42 42 H 1.09002 * 109.30196 * 101.23763 * 27 26 24 43 43 H 1.08998 * 109.29923 * 220.81895 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7494 1.2428 5 1 2.3528 -0.0459 2.0201 6 7 1.0472 -1.6854 1.7474 7 6 1.0606 -2.0616 3.0640 8 1 1.8144 -1.6686 3.7303 9 6 0.1062 -2.9489 3.5422 10 7 -0.8121 -3.4283 2.7301 11 14 0.1241 -3.4615 5.3384 12 1 -0.0395 -2.2612 6.1973 13 1 -0.9909 -4.4084 5.5941 14 1 1.4168 -4.1220 5.6517 15 6 3.2876 -1.5141 0.6925 16 6 2.8100 -1.8824 -0.7368 17 7 2.0301 -0.7141 -1.1839 18 6 1.8075 -0.3621 -2.4657 19 8 1.1429 0.6206 -2.7180 20 6 2.3843 -1.1895 -3.5853 21 1 3.4716 -1.2036 -3.5102 22 6 1.9703 -0.5850 -4.9272 23 6 2.7146 -1.3272 -6.0400 24 6 2.5788 -2.8100 -5.8447 25 8 2.8193 -3.5371 -6.7850 26 7 2.2084 -3.3699 -4.6925 27 6 1.8454 -2.6179 -3.4979 28 1 -0.3632 -1.0276 -0.0064 29 1 -0.3633 0.5083 0.8931 30 1 -0.3634 0.5194 -0.8868 31 1 0.3705 -2.0387 1.1490 32 1 -1.4793 -4.0480 3.0643 33 1 4.1654 -0.8687 0.6605 34 1 3.4856 -2.4105 1.2802 35 1 2.1803 -2.7718 -0.7114 36 1 3.6656 -2.0411 -1.3932 37 1 2.2336 0.4724 -4.9516 38 1 0.8952 -0.6992 -5.0655 39 1 3.7695 -1.0538 -6.0148 40 1 2.2927 -1.0490 -7.0058 41 1 2.1782 -4.3384 -4.6467 42 1 0.7596 -2.5885 -3.4067 43 1 2.2673 -3.1091 -2.6210 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074722353.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:04:26 Heat of formation + Delta-G solvation = -56.953509 kcal Electronic energy + Delta-G solvation = -24876.974649 eV Core-core repulsion = 21343.185698 eV Total energy + Delta-G solvation = -3533.788951 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.91106 -39.75022 -37.79238 -36.30367 -34.10331 -33.22098 -31.89685 -30.92920 -30.11536 -28.62104 -25.50293 -24.84449 -23.92995 -23.48392 -22.13738 -20.27188 -19.34588 -18.60246 -17.70634 -17.33684 -16.83200 -16.25889 -16.12275 -15.51858 -14.93961 -14.61447 -14.42342 -14.21630 -13.93112 -13.75426 -13.55886 -13.31670 -12.95330 -12.65122 -12.40454 -12.10500 -12.01804 -11.74202 -11.45668 -11.39190 -11.24894 -11.05769 -10.99991 -10.81640 -10.71017 -10.32645 -10.15078 -9.94285 -9.70718 -9.60375 -9.31032 -9.02864 -8.44652 -7.11258 -5.89302 -3.19117 2.44019 2.61013 3.01317 3.14033 3.36265 3.41677 3.42510 4.25336 4.31309 4.42813 4.47307 4.48481 4.86210 4.94828 4.99528 5.07370 5.20746 5.22466 5.34662 5.45586 5.48218 5.52146 5.56305 5.64862 5.73798 5.75923 5.89110 5.92002 6.01549 6.23897 6.33846 6.42580 6.52984 6.53593 6.62548 6.77760 6.93872 7.08216 7.59101 7.70020 7.99400 8.23949 8.29128 9.40874 9.94990 10.29909 11.32726 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.023333 B = 0.003783 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.737118 B = 7399.427626 C = 7932.295046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.125 3.875 3 H 0.071 0.929 4 C 0.172 3.828 5 H 0.071 0.929 6 N -0.713 5.713 7 C -0.247 4.247 8 H 0.071 0.929 9 C -0.007 4.007 10 N -0.931 5.931 11 Si 0.907 3.093 12 H -0.285 1.285 13 H -0.291 1.291 14 H -0.286 1.286 15 C -0.160 4.160 16 C 0.100 3.900 17 N -0.605 5.605 18 C 0.535 3.465 19 O -0.538 6.538 20 C -0.120 4.120 21 H 0.104 0.896 22 C -0.104 4.104 23 C -0.135 4.135 24 C 0.519 3.481 25 O -0.562 6.562 26 N -0.716 5.716 27 C 0.112 3.888 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.388 0.612 32 H 0.257 0.743 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.101 0.899 40 H 0.104 0.896 41 H 0.402 0.598 42 H 0.075 0.925 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.288 4.262 -11.778 15.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.022 3.978 3 H 0.089 0.911 4 C 0.059 3.941 5 H 0.088 0.912 6 N -0.355 5.355 7 C -0.378 4.378 8 H 0.089 0.911 9 C -0.204 4.204 10 N -0.578 5.578 11 Si 0.738 3.262 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.212 1.212 15 C -0.202 4.202 16 C -0.023 4.023 17 N -0.339 5.339 18 C 0.322 3.678 19 O -0.415 6.415 20 C -0.142 4.142 21 H 0.122 0.878 22 C -0.142 4.142 23 C -0.175 4.175 24 C 0.306 3.694 25 O -0.441 6.441 26 N -0.368 5.368 27 C -0.012 4.012 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.224 0.776 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.107 0.893 38 H 0.097 0.903 39 H 0.119 0.881 40 H 0.123 0.877 41 H 0.238 0.762 42 H 0.094 0.906 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.028 4.643 -12.281 15.390 hybrid contribution -0.198 -0.951 1.054 1.433 sum 7.830 3.692 -11.227 14.178 Atomic orbital electron populations 1.21918 0.94144 1.02961 1.01694 1.22043 0.95492 0.95660 0.84607 0.91101 1.21194 0.89078 0.91662 0.92135 0.91159 1.42533 1.32661 1.51381 1.08906 1.19193 1.10969 1.21432 0.86185 0.91075 1.24732 0.97816 0.99959 0.97893 1.69641 1.18351 1.35440 1.34363 0.86276 0.76997 0.78090 0.84827 1.21208 1.21714 1.21231 1.23574 0.99353 1.02469 0.94755 1.22481 0.94448 0.88754 0.96568 1.48688 1.51877 1.28332 1.04960 1.19754 0.80650 0.85275 0.82153 1.90692 1.39790 1.27867 1.83189 1.21513 1.02503 0.94874 0.95317 0.87755 1.21426 1.01340 1.00713 0.90684 1.21691 1.03558 0.90785 1.01464 1.20252 0.75680 0.91577 0.81877 1.90758 1.51003 1.63068 1.39278 1.45446 1.68681 1.10917 1.11744 1.21512 1.01091 0.90812 0.87832 0.91550 0.91460 0.92748 0.77552 0.93321 0.91942 0.89356 0.90732 0.91635 0.89281 0.90307 0.88074 0.87719 0.76168 0.90637 0.89012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 8.51 37.16 0.32 -2.30 16 2 C 0.13 1.99 3.43 -66.95 -0.23 1.76 16 3 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 4 C 0.17 2.96 3.48 -66.10 -0.23 2.73 16 5 H 0.07 1.22 8.09 -51.93 -0.42 0.80 16 6 N -0.71 -15.69 4.54 -51.65 -0.23 -15.92 16 7 C -0.25 -6.21 9.96 -15.06 -0.15 -6.36 16 8 H 0.07 1.73 7.83 -52.48 -0.41 1.32 16 9 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 10 N -0.93 -26.23 13.06 55.49 0.72 -25.51 16 11 Si 0.91 21.08 29.55 -169.99 -5.02 16.06 16 12 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 14 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 15 C -0.16 -2.28 6.78 -24.46 -0.17 -2.45 16 16 C 0.10 1.25 5.12 -2.41 -0.01 1.24 16 17 N -0.61 -8.37 3.06 -162.88 -0.50 -8.87 16 18 C 0.53 7.25 6.99 -10.99 -0.08 7.17 16 19 O -0.54 -8.99 14.90 5.56 0.08 -8.91 16 20 C -0.12 -1.19 1.92 -91.87 -0.18 -1.37 16 21 H 0.10 0.88 7.86 -51.93 -0.41 0.47 16 22 C -0.10 -0.97 4.69 -26.75 -0.13 -1.10 16 23 C -0.14 -1.17 6.03 -28.10 -0.17 -1.34 16 24 C 0.52 5.92 7.71 -11.87 -0.09 5.83 16 25 O -0.56 -8.62 17.78 5.56 0.10 -8.52 16 26 N -0.72 -6.96 5.45 -61.39 -0.33 -7.30 16 27 C 0.11 1.06 6.15 -4.48 -0.03 1.03 16 28 H 0.07 1.29 6.20 -51.93 -0.32 0.97 16 29 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.05 0.95 6.88 -51.93 -0.36 0.60 16 31 H 0.39 9.19 5.67 -40.82 -0.23 8.96 16 32 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 35 H 0.07 1.01 7.30 -51.93 -0.38 0.63 16 36 H 0.07 0.63 7.26 -51.93 -0.38 0.26 16 37 H 0.09 0.84 7.87 -51.93 -0.41 0.43 16 38 H 0.08 0.81 8.13 -51.93 -0.42 0.39 16 39 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.40 3.60 8.80 -40.82 -0.36 3.24 16 42 H 0.08 0.79 8.11 -51.93 -0.42 0.36 16 43 H 0.09 0.81 5.34 -51.93 -0.28 0.53 16 LS Contribution 338.42 15.07 5.10 5.10 Total: -1.00 -31.10 338.42 -7.78 -38.89 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -6.47 Total: 10.42 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: -1.23 Total: 4.55 kcal Atomic # 7 Polarization: -57.25 SS G_CDS: -0.34 Total: -57.59 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: 0.18 Total: -17.43 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.10 -7.78 -38.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074722353.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.064 kcal (2) G-P(sol) polarization free energy of solvation -31.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds