Wall clock time and date at job start Tue Mar 31 2020 04:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 109.99921 * 2 1 4 4 C 1.54322 * 109.87867 * 121.09445 * 2 1 3 5 5 H 1.09001 * 110.72137 * 259.97266 * 4 2 1 6 6 N 1.46501 * 110.72331 * 23.24757 * 4 2 1 7 7 C 1.36942 * 120.00053 * 204.99994 * 6 4 2 8 8 H 1.07992 * 120.00065 * 359.97438 * 7 6 4 9 9 C 1.38810 * 119.99590 * 179.97438 * 7 6 4 10 10 N 1.31616 * 120.00418 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99888 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.46795 * 0.02562 * 11 9 7 13 13 H 1.48494 * 109.46987 * 120.00031 * 11 9 7 14 14 H 1.48496 * 109.47166 * 240.00066 * 11 9 7 15 15 C 1.55158 * 102.94309 * 141.61278 * 4 2 1 16 16 C 1.55129 * 101.48233 * 324.33094 * 15 4 2 17 17 N 1.47019 * 109.88411 * 238.90230 * 2 1 3 18 18 C 1.34770 * 125.65140 * 61.60620 * 17 2 1 19 19 O 1.21285 * 119.99654 * 5.08869 * 18 17 2 20 20 C 1.50706 * 120.00514 * 185.08809 * 18 17 2 21 21 H 1.09001 * 110.42811 * 22.79603 * 20 18 17 22 22 C 1.54624 * 110.48522 * 145.33645 * 20 18 17 23 23 C 1.54488 * 101.76256 * 143.47961 * 22 20 18 24 24 N 1.46757 * 105.47029 * 334.58342 * 23 22 20 25 25 C 1.46504 * 124.34977 * 196.75012 * 24 23 22 26 26 C 1.34422 * 111.30414 * 17.01416 * 24 23 22 27 27 O 1.21283 * 124.94128 * 179.56643 * 26 24 23 28 28 H 1.09006 * 109.47170 * 179.64014 * 1 2 3 29 29 H 1.09000 * 109.47762 * 299.64679 * 1 2 3 30 30 H 1.09006 * 109.46730 * 59.64453 * 1 2 3 31 31 H 0.97005 * 119.99771 * 25.00355 * 6 4 2 32 32 H 0.96995 * 120.00369 * 179.97438 * 10 9 7 33 33 H 1.08998 * 111.00395 * 82.57044 * 15 4 2 34 34 H 1.09001 * 111.00624 * 206.38550 * 15 4 2 35 35 H 1.09003 * 110.49868 * 278.45022 * 16 15 4 36 36 H 1.09003 * 110.34065 * 156.06299 * 16 15 4 37 37 H 1.09001 * 110.97459 * 25.36086 * 22 20 18 38 38 H 1.08997 * 111.00345 * 261.61050 * 22 20 18 39 39 H 1.08999 * 110.24290 * 215.58795 * 23 22 20 40 40 H 1.08998 * 110.31777 * 93.62391 * 23 22 20 41 41 H 1.09005 * 109.47129 * 89.99735 * 25 24 23 42 42 H 1.08996 * 109.47328 * 209.99654 * 25 24 23 43 43 H 1.08996 * 109.46928 * 330.00634 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0547 -0.7495 1.2427 5 1 2.3528 -0.0460 2.0201 6 7 1.0470 -1.6855 1.7475 7 6 1.0605 -2.0617 3.0641 8 1 1.8142 -1.6687 3.7303 9 6 0.1053 -2.9481 3.5424 10 7 -0.8135 -3.4267 2.7306 11 14 0.1240 -3.4619 5.3383 12 1 1.2492 -2.7874 6.0343 13 1 -1.1581 -3.0721 5.9780 14 1 0.2956 -4.9341 5.4302 15 6 3.2875 -1.5142 0.6925 16 6 2.8099 -1.8825 -0.7367 17 7 2.0300 -0.7141 -1.1839 18 6 1.8075 -0.3622 -2.4656 19 8 1.2226 0.6698 -2.7183 20 6 2.2854 -1.2509 -3.5850 21 1 2.4130 -2.2737 -3.2306 22 6 1.2936 -1.2086 -4.7705 23 6 2.2482 -1.2862 -5.9827 24 7 3.5286 -0.7491 -5.5076 25 6 4.6148 -0.3042 -6.3844 26 6 3.5791 -0.7229 -4.1646 27 8 4.5246 -0.3333 -3.5124 28 1 -0.3634 -1.0277 -0.0065 29 1 -0.3634 0.5083 0.8931 30 1 -0.3633 0.5194 -0.8868 31 1 0.3703 -2.0388 1.1490 32 1 -1.4807 -4.0464 3.0647 33 1 4.1653 -0.8688 0.6606 34 1 3.4855 -2.4107 1.2802 35 1 2.1801 -2.7719 -0.7114 36 1 3.6656 -2.0413 -1.3930 37 1 0.7314 -0.2748 -4.7758 38 1 0.6211 -2.0662 -4.7481 39 1 1.8658 -0.6793 -6.8033 40 1 2.3689 -2.3208 -6.3037 41 1 4.4891 0.7548 -6.6099 42 1 5.5712 -0.4583 -5.8848 43 1 4.5920 -0.8781 -7.3108 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074814808.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:04:35 Heat of formation + Delta-G solvation = -63.298045 kcal Electronic energy + Delta-G solvation = -24885.292712 eV Core-core repulsion = 21351.228642 eV Total energy + Delta-G solvation = -3534.064070 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.12747 -40.71663 -38.84910 -37.52898 -35.76934 -34.08156 -33.18042 -32.23796 -30.71725 -28.82516 -27.74492 -26.77395 -25.52400 -24.33226 -22.94534 -21.51215 -20.70973 -19.74373 -19.41811 -18.52264 -17.76295 -17.58933 -17.17508 -16.56951 -16.32713 -15.72687 -15.60549 -15.36677 -14.86227 -14.78078 -14.52269 -14.24364 -14.14460 -13.86744 -13.83929 -13.46873 -13.33194 -13.13815 -12.98553 -12.87650 -12.73564 -12.53123 -12.41627 -12.29301 -12.05446 -11.99374 -11.67572 -11.46881 -11.08419 -10.93750 -10.92821 -9.77717 -9.69709 -8.99298 -7.91002 -5.19072 1.16919 1.45605 1.50672 1.52069 1.61000 1.88248 2.16276 2.58706 3.19054 3.27553 3.40374 3.53802 3.75077 3.86183 3.92270 3.94834 4.07421 4.25583 4.26385 4.33954 4.36690 4.39080 4.54231 4.61690 4.67149 4.70661 4.79781 4.85211 4.91702 4.93418 5.03767 5.11234 5.16872 5.31212 5.34207 5.41279 5.47851 5.58512 5.92677 6.30561 6.48941 6.95196 7.01809 7.38446 8.09873 8.35805 9.32271 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.030676 B = 0.003606 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.532677 B = 7762.808857 C = 7922.747539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.129 3.871 3 H 0.072 0.928 4 C 0.166 3.834 5 H 0.073 0.927 6 N -0.721 5.721 7 C -0.236 4.236 8 H 0.078 0.922 9 C -0.070 4.070 10 N -0.966 5.966 11 Si 0.968 3.032 12 H -0.267 1.267 13 H -0.299 1.299 14 H -0.296 1.296 15 C -0.147 4.147 16 C 0.109 3.891 17 N -0.602 5.602 18 C 0.543 3.457 19 O -0.574 6.574 20 C -0.146 4.146 21 H 0.144 0.856 22 C -0.116 4.116 23 C 0.105 3.895 24 N -0.618 5.618 25 C 0.091 3.909 26 C 0.523 3.477 27 O -0.566 6.566 28 H 0.048 0.952 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.378 0.622 32 H 0.250 0.750 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.124 0.876 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.981 1.776 -20.357 21.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.025 3.975 3 H 0.090 0.910 4 C 0.056 3.944 5 H 0.091 0.909 6 N -0.362 5.362 7 C -0.367 4.367 8 H 0.096 0.904 9 C -0.263 4.263 10 N -0.617 5.617 11 Si 0.798 3.202 12 H -0.191 1.191 13 H -0.226 1.226 14 H -0.223 1.223 15 C -0.188 4.188 16 C -0.013 4.013 17 N -0.333 5.333 18 C 0.331 3.669 19 O -0.454 6.454 20 C -0.170 4.170 21 H 0.162 0.838 22 C -0.154 4.154 23 C -0.016 4.016 24 N -0.351 5.351 25 C -0.050 4.050 26 C 0.309 3.691 27 O -0.446 6.446 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.214 0.786 32 H 0.058 0.942 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.143 0.857 39 H 0.125 0.875 40 H 0.126 0.874 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 8.271 2.563 -20.118 21.902 hybrid contribution -0.447 -0.424 1.117 1.275 sum 7.825 2.139 -19.001 20.660 Atomic orbital electron populations 1.21733 0.94823 1.01424 1.01112 1.21871 0.94698 0.95925 0.85020 0.90971 1.21348 0.89160 0.91312 0.92577 0.90932 1.42634 1.33497 1.52047 1.08056 1.19648 1.09922 1.19870 0.87299 0.90361 1.25446 0.98235 1.01106 1.01467 1.69806 1.19421 1.36797 1.35691 0.85145 0.77080 0.77225 0.80706 1.19119 1.22620 1.22293 1.23389 0.98617 1.01873 0.94906 1.22368 0.94861 0.87721 0.96319 1.48627 1.51426 1.28577 1.04715 1.19935 0.78629 0.85758 0.82565 1.90640 1.44682 1.26462 1.83627 1.22187 0.96744 1.01959 0.96114 0.83846 1.22741 0.96700 1.06020 0.89916 1.22433 0.80457 1.01699 0.97017 1.48300 1.18790 1.62544 1.05494 1.21765 0.88271 1.00548 0.94393 1.20454 0.87559 0.77426 0.83640 1.90721 1.39002 1.49655 1.65174 0.93339 0.92123 0.93027 0.78648 0.94150 0.90127 0.90135 0.91339 0.89611 0.90025 0.85737 0.87472 0.87380 0.92203 0.91918 0.87108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.17 8.51 71.98 0.61 -4.56 16 2 C 0.13 4.77 3.40 45.34 0.15 4.92 16 3 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 4 C 0.17 6.43 3.48 46.18 0.16 6.59 16 5 H 0.07 2.78 8.09 -2.39 -0.02 2.76 16 6 N -0.72 -34.23 4.54 -317.33 -1.44 -35.67 16 7 C -0.24 -12.40 9.96 84.03 0.84 -11.56 16 8 H 0.08 3.96 7.83 -2.91 -0.02 3.93 16 9 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 10 N -0.97 -57.06 13.06 21.65 0.28 -56.78 16 11 Si 0.97 44.95 29.55 68.60 2.03 46.98 16 12 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 13 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 14 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 15 C -0.15 -4.90 6.78 32.06 0.22 -4.68 16 16 C 0.11 3.41 6.17 86.93 0.54 3.94 16 17 N -0.60 -20.58 3.06 -787.63 -2.41 -22.99 16 18 C 0.54 18.22 6.57 87.66 0.58 18.79 16 19 O -0.57 -22.55 15.13 -3.05 -0.05 -22.59 16 20 C -0.15 -3.54 2.78 -11.55 -0.03 -3.57 16 21 H 0.14 2.91 7.09 -2.39 -0.02 2.90 16 22 C -0.12 -1.90 6.65 31.65 0.21 -1.69 16 23 C 0.11 1.13 7.35 86.84 0.64 1.77 16 24 N -0.62 -11.35 3.33 -842.90 -2.81 -14.16 16 25 C 0.09 1.21 10.97 127.77 1.40 2.61 16 26 C 0.52 14.17 7.44 87.89 0.65 14.83 16 27 O -0.57 -20.12 17.42 -3.04 -0.05 -20.18 16 28 H 0.05 2.06 6.20 -2.38 -0.01 2.05 16 29 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.05 1.98 7.05 -2.38 -0.02 1.97 16 31 H 0.38 19.40 5.67 -92.70 -0.53 18.88 16 32 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 33 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 35 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.09 2.39 7.63 -2.39 -0.02 2.37 16 37 H 0.08 1.71 7.06 -2.39 -0.02 1.70 16 38 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 42 H 0.06 1.02 7.92 -2.39 -0.02 1.00 16 43 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -73.67 347.25 2.46 -71.20 By element: Atomic # 1 Polarization: 29.72 SS G_CDS: 0.49 Total: 30.20 kcal Atomic # 6 Polarization: 17.55 SS G_CDS: 6.43 Total: 23.98 kcal Atomic # 7 Polarization: -123.21 SS G_CDS: -6.38 Total: -129.60 kcal Atomic # 8 Polarization: -42.67 SS G_CDS: -0.10 Total: -42.77 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -73.67 2.46 -71.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074814808.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.905 kcal (2) G-P(sol) polarization free energy of solvation -73.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds