Wall clock time and date at job start Tue Mar 31 2020 04:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 110.91663 * 2 1 4 4 C 1.55122 * 111.16477 * 236.07151 * 2 1 3 5 5 N 1.47423 * 104.94530 * 205.12988 * 4 2 1 6 6 C 1.36939 * 125.64858 * 204.04087 * 5 4 2 7 7 H 1.08002 * 120.00116 * 354.83704 * 6 5 4 8 8 C 1.38812 * 119.99821 * 174.84145 * 6 5 4 9 9 N 1.31617 * 120.00272 * 7.05573 * 8 6 5 10 10 Si 1.86808 * 119.99831 * 187.06431 * 8 6 5 11 11 H 1.48499 * 109.47014 * 94.98455 * 10 8 6 12 12 H 1.48499 * 109.46515 * 214.98464 * 10 8 6 13 13 H 1.48500 * 109.46965 * 334.98234 * 10 8 6 14 14 C 1.47019 * 108.70522 * 24.00600 * 5 4 2 15 15 C 1.54329 * 107.26737 * 358.93913 * 14 5 4 16 16 H 1.08996 * 110.72048 * 96.35172 * 15 14 5 17 17 N 1.46505 * 110.71957 * 219.44360 * 15 14 5 18 18 C 1.34773 * 119.99779 * 271.15716 * 17 15 14 19 19 O 1.21278 * 120.00415 * 0.02562 * 18 17 15 20 20 C 1.50701 * 119.99738 * 180.02562 * 18 17 15 21 21 H 1.09004 * 109.66998 * 300.00183 * 20 18 17 22 22 C 1.53347 * 109.67446 * 179.50372 * 20 18 17 23 23 C 1.52925 * 108.67399 * 172.70038 * 22 20 18 24 24 N 1.45746 * 110.49002 * 50.74976 * 23 22 20 25 25 C 1.33360 * 124.10682 * 340.94683 * 24 23 22 26 26 O 1.21278 * 118.24277 * 182.17328 * 25 24 23 27 27 C 1.50259 * 123.52139 * 2.17477 * 25 24 23 28 28 H 1.08993 * 109.47218 * 296.09492 * 1 2 3 29 29 H 1.08997 * 109.46942 * 56.10085 * 1 2 3 30 30 H 1.08997 * 109.47021 * 176.09457 * 1 2 3 31 31 H 1.09007 * 110.41896 * 86.20594 * 4 2 1 32 32 H 1.08993 * 110.30262 * 324.00069 * 4 2 1 33 33 H 0.97003 * 120.00184 * 180.02562 * 9 8 6 34 34 H 1.08995 * 109.88375 * 239.52457 * 14 5 4 35 35 H 1.08998 * 109.88715 * 118.35429 * 14 5 4 36 36 H 0.97003 * 119.99718 * 91.15869 * 17 15 14 37 37 H 1.08994 * 109.60035 * 292.45405 * 22 20 18 38 38 H 1.08996 * 109.60421 * 52.77909 * 22 20 18 39 39 H 1.09000 * 109.29860 * 171.06772 * 23 22 20 40 40 H 1.08998 * 109.29910 * 290.43653 * 23 22 20 41 41 H 0.97003 * 117.95144 * 160.92465 * 24 23 22 42 42 H 1.09003 * 109.45039 * 222.33479 * 27 25 24 43 43 H 1.08999 * 109.38546 * 102.56829 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0900 -0.8074 -1.2003 5 7 3.4299 -1.2473 -0.7705 6 6 4.4680 -1.5727 -1.6022 7 1 4.3160 -1.5977 -2.6712 8 6 5.7155 -1.8704 -1.0713 9 7 5.8680 -1.9764 0.2317 10 14 7.1781 -2.1204 -2.2063 11 1 7.9291 -0.8457 -2.3338 12 1 8.0692 -3.1658 -1.6421 13 1 6.6983 -2.5485 -3.5449 14 6 3.4672 -1.2781 0.6989 15 6 2.0861 -0.8080 1.2022 16 1 1.4451 -1.6614 1.4229 17 7 2.2286 0.0495 2.3815 18 6 2.2498 -0.4969 3.6133 19 8 2.1513 -1.6985 3.7456 20 6 2.3958 0.3851 4.8265 21 1 3.3348 0.9357 4.7689 22 6 2.3787 -0.4754 6.0956 23 6 2.7098 0.4140 7.2947 24 7 1.8654 1.6019 7.2975 25 6 1.2104 2.0562 6.2283 26 8 0.5685 3.0791 6.3404 27 6 1.2249 1.3688 4.8923 28 1 -0.3633 0.4520 0.9228 29 1 -0.3633 0.5732 -0.8530 30 1 -0.3633 -1.0252 -0.0700 31 1 2.1643 -0.1732 -2.0837 32 1 1.4554 -1.6695 -1.4053 33 1 6.7399 -2.1841 0.6027 34 1 4.2434 -0.6057 1.0641 35 1 3.6613 -2.2937 1.0436 36 1 2.3077 1.0105 2.2757 37 1 1.3893 -0.9133 6.2272 38 1 3.1212 -1.2687 6.0095 39 1 2.5462 -0.1466 8.2151 40 1 3.7559 0.7157 7.2415 41 1 1.7737 2.0926 8.1292 42 1 1.3319 2.1125 4.1026 43 1 0.2890 0.8275 4.7537 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079558941.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:11:08 Heat of formation + Delta-G solvation = -58.045294 kcal Electronic energy + Delta-G solvation = -24511.484643 eV Core-core repulsion = 20977.648349 eV Total energy + Delta-G solvation = -3533.836294 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.75400 -39.39990 -37.67134 -36.34345 -34.00382 -33.35759 -32.49851 -30.39893 -29.87062 -27.89651 -25.75023 -25.34544 -23.84904 -22.95934 -20.69221 -20.02556 -19.61336 -19.34544 -17.68121 -16.95076 -16.77698 -16.42771 -15.77389 -15.49337 -15.07842 -14.71378 -14.47689 -14.03280 -13.77136 -13.64140 -13.42526 -13.11790 -12.81447 -12.76134 -12.09169 -12.06373 -11.86599 -11.70313 -11.36876 -11.30551 -11.24942 -11.01861 -10.80621 -10.62536 -10.41134 -10.30539 -10.00857 -9.94383 -9.71418 -9.40162 -9.36001 -8.63042 -8.50173 -6.84745 -5.72429 -3.06194 2.40417 2.84591 3.03181 3.37116 3.39864 3.44885 3.46950 4.27576 4.40921 4.47955 4.53123 4.54246 4.98533 5.02294 5.05326 5.11854 5.27849 5.30896 5.42572 5.45681 5.53134 5.54190 5.73742 5.78249 5.95822 5.97607 5.97892 6.13538 6.17721 6.33837 6.47465 6.48355 6.61713 6.74270 6.91617 7.04339 7.51545 7.58769 7.82090 7.85983 7.95393 8.23828 8.50719 9.19895 9.80794 10.46043 11.38737 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.019120 B = 0.003883 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.098597 B = 7210.000564 C = 8108.682590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.114 4.114 3 H 0.077 0.923 4 C 0.141 3.859 5 N -0.606 5.606 6 C -0.231 4.231 7 H 0.079 0.921 8 C -0.006 4.006 9 N -0.918 5.918 10 Si 0.910 3.090 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.281 1.281 14 C 0.173 3.827 15 C 0.120 3.880 16 H 0.087 0.913 17 N -0.710 5.710 18 C 0.519 3.481 19 O -0.534 6.534 20 C -0.113 4.113 21 H 0.106 0.894 22 C -0.117 4.117 23 C 0.109 3.891 24 N -0.720 5.720 25 C 0.525 3.475 26 O -0.559 6.559 27 C -0.126 4.126 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.042 0.958 32 H 0.021 0.979 33 H 0.252 0.748 34 H 0.051 0.949 35 H 0.045 0.955 36 H 0.396 0.604 37 H 0.079 0.921 38 H 0.099 0.901 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.399 0.601 42 H 0.107 0.893 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.536 6.584 12.036 16.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.134 4.134 3 H 0.096 0.904 4 C 0.014 3.986 5 N -0.333 5.333 6 C -0.359 4.359 7 H 0.097 0.903 8 C -0.202 4.202 9 N -0.565 5.565 10 Si 0.740 3.260 11 H -0.216 1.216 12 H -0.218 1.218 13 H -0.206 1.206 14 C 0.047 3.953 15 C 0.015 3.985 16 H 0.106 0.894 17 N -0.360 5.360 18 C 0.303 3.697 19 O -0.410 6.410 20 C -0.134 4.134 21 H 0.124 0.876 22 C -0.156 4.156 23 C -0.016 4.016 24 N -0.372 5.372 25 C 0.312 3.688 26 O -0.438 6.438 27 C -0.166 4.166 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.039 0.961 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.230 0.770 37 H 0.097 0.903 38 H 0.117 0.883 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.234 0.766 42 H 0.125 0.875 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -8.682 6.013 11.968 15.961 hybrid contribution 1.040 0.410 -0.287 1.154 sum -7.642 6.423 11.681 15.366 Atomic orbital electron populations 1.21692 0.94999 1.01777 1.01028 1.22647 0.94818 0.99519 0.96417 0.90443 1.21624 0.87622 0.94973 0.94357 1.44411 1.08228 1.78844 1.01790 1.19064 0.87438 1.40271 0.89169 0.90300 1.24830 0.97619 1.01813 0.95987 1.69989 1.22612 1.54389 1.09482 0.86128 0.82804 0.77376 0.79654 1.21645 1.21760 1.20596 1.21477 0.90109 1.00266 0.83436 1.22511 1.00280 0.92756 0.82949 0.89449 1.45953 1.73708 1.10512 1.05824 1.20194 0.76579 0.88715 0.84172 1.90721 1.49155 1.14952 1.86220 1.21470 1.00429 0.96880 0.94647 0.87619 1.21717 1.04879 0.97749 0.91211 1.21476 0.94490 0.85840 0.99751 1.45503 1.49274 1.29480 1.12974 1.20056 0.78132 0.84437 0.86175 1.90770 1.43094 1.24884 1.85015 1.21663 1.00347 0.99188 0.95371 0.93069 0.92762 0.92618 0.93944 0.96109 0.93763 0.93047 0.93645 0.77049 0.90251 0.88272 0.90044 0.91172 0.76586 0.87499 0.87594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.32 37.16 0.35 -1.42 16 2 C -0.11 -1.84 3.27 -88.36 -0.29 -2.12 16 3 H 0.08 1.20 8.00 -51.93 -0.42 0.78 16 4 C 0.14 2.81 6.72 -2.41 -0.02 2.79 16 5 N -0.61 -15.31 3.40 -169.94 -0.58 -15.88 16 6 C -0.23 -6.42 10.27 -15.06 -0.15 -6.57 16 7 H 0.08 2.11 7.84 -52.49 -0.41 1.70 16 8 C -0.01 -0.17 5.48 -17.43 -0.10 -0.26 16 9 N -0.92 -27.05 10.36 55.49 0.57 -26.48 16 10 Si 0.91 22.02 29.56 -169.99 -5.02 16.99 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 14 C 0.17 4.18 5.14 -3.06 -0.02 4.16 16 15 C 0.12 2.19 2.74 -66.09 -0.18 2.00 16 16 H 0.09 1.71 7.52 -51.93 -0.39 1.32 16 17 N -0.71 -10.46 5.03 -52.03 -0.26 -10.72 16 18 C 0.52 7.67 7.13 -10.99 -0.08 7.59 16 19 O -0.53 -10.12 15.58 5.56 0.09 -10.03 16 20 C -0.11 -1.16 2.60 -91.56 -0.24 -1.40 16 21 H 0.11 1.00 8.13 -51.93 -0.42 0.57 16 22 C -0.12 -1.08 4.71 -26.59 -0.13 -1.20 16 23 C 0.11 0.71 7.17 -4.49 -0.03 0.68 16 24 N -0.72 -5.89 5.45 -61.36 -0.33 -6.23 16 25 C 0.52 5.76 7.72 -11.83 -0.09 5.67 16 26 O -0.56 -8.33 17.78 5.56 0.10 -8.23 16 27 C -0.13 -1.20 5.20 -28.06 -0.15 -1.35 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.73 8.08 -51.93 -0.42 0.31 16 31 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.02 0.42 7.99 -51.93 -0.41 0.00 16 33 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 34 H 0.05 1.37 7.18 -51.93 -0.37 0.99 16 35 H 0.05 1.29 7.61 -51.93 -0.40 0.89 16 36 H 0.40 4.74 8.27 -40.82 -0.34 4.41 16 37 H 0.08 0.77 8.12 -51.93 -0.42 0.34 16 38 H 0.10 1.01 7.89 -51.93 -0.41 0.60 16 39 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.40 2.79 8.80 -40.82 -0.36 2.43 16 42 H 0.11 0.93 7.94 -51.93 -0.41 0.51 16 43 H 0.11 1.01 8.09 -51.93 -0.42 0.59 16 LS Contribution 346.40 15.07 5.22 5.22 Total: -1.00 -35.04 346.40 -8.19 -43.22 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -6.85 Total: 3.56 kcal Atomic # 6 Polarization: 9.69 SS G_CDS: -1.12 Total: 8.57 kcal Atomic # 7 Polarization: -58.71 SS G_CDS: -0.60 Total: -59.31 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: 0.19 Total: -18.26 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -35.04 -8.19 -43.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079558941.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.824 kcal (2) G-P(sol) polarization free energy of solvation -35.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds