Wall clock time and date at job start Tue Mar 31 2020 04:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.78117 * 2 1 4 4 C 1.54321 * 110.71903 * 236.75311 * 2 1 3 5 5 N 1.47024 * 107.27243 * 219.44122 * 4 2 1 6 6 C 1.36928 * 125.64664 * 178.99882 * 5 4 2 7 7 H 1.07998 * 120.00666 * 0.02562 * 6 5 4 8 8 C 1.38819 * 119.99792 * 180.02562 * 6 5 4 9 9 N 1.31618 * 120.00050 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99997 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.47137 * 0.02562 * 10 8 6 12 12 H 1.48503 * 109.46837 * 120.00025 * 10 8 6 13 13 H 1.48497 * 109.47481 * 240.00127 * 10 8 6 14 14 C 1.47471 * 108.71977 * 358.98168 * 5 4 2 15 15 C 1.54909 * 104.81396 * 24.06536 * 14 5 4 16 16 H 1.09006 * 111.00079 * 81.13732 * 15 14 5 17 17 N 1.46495 * 111.00559 * 204.94636 * 15 14 5 18 18 C 1.34778 * 120.00426 * 270.42363 * 17 15 14 19 19 O 1.21279 * 119.99514 * 359.97438 * 18 17 15 20 20 C 1.50702 * 119.99853 * 179.97438 * 18 17 15 21 21 H 1.08995 * 110.85547 * 62.33877 * 20 18 17 22 22 C 1.54623 * 110.97026 * 298.54270 * 20 18 17 23 23 C 1.51282 * 104.31101 * 217.02085 * 22 20 18 24 24 O 1.21281 * 124.94192 * 196.29810 * 23 22 20 25 25 N 1.34735 * 109.93792 * 16.31290 * 23 22 20 26 26 C 1.46501 * 124.30373 * 180.38847 * 25 23 22 27 27 C 1.46768 * 111.35098 * 0.35387 * 25 23 22 28 28 H 1.09005 * 109.47438 * 296.76262 * 1 2 3 29 29 H 1.08997 * 109.47154 * 56.76107 * 1 2 3 30 30 H 1.08998 * 109.47407 * 176.76975 * 1 2 3 31 31 H 1.08998 * 109.88647 * 338.86342 * 4 2 1 32 32 H 1.09006 * 109.88009 * 100.02844 * 4 2 1 33 33 H 0.97005 * 119.99862 * 180.02562 * 9 8 6 34 34 H 1.09000 * 110.34417 * 265.24758 * 14 5 4 35 35 H 1.08999 * 110.40275 * 142.91566 * 14 5 4 36 36 H 0.97003 * 120.00183 * 90.41704 * 17 15 14 37 37 H 1.09002 * 110.48860 * 335.76559 * 22 20 18 38 38 H 1.08998 * 110.48497 * 98.27453 * 22 20 18 39 39 H 1.09003 * 109.47155 * 269.96591 * 26 25 23 40 40 H 1.09001 * 109.46623 * 29.95972 * 26 25 23 41 41 H 1.09000 * 109.47491 * 149.95795 * 26 25 23 42 42 H 1.09000 * 110.24529 * 224.01554 * 27 25 23 43 43 H 1.09008 * 110.31722 * 102.05615 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0759 -0.7913 -1.2071 5 7 3.2445 -1.5508 -0.7388 6 6 4.0044 -2.3967 -1.5016 7 1 3.7620 -2.5499 -2.5428 8 6 5.0867 -3.0575 -0.9366 9 7 5.3820 -2.8712 0.3325 10 14 6.1230 -4.2121 -1.9770 11 1 5.5861 -4.2477 -3.3611 12 1 7.5270 -3.7288 -2.0034 13 1 6.0802 -5.5770 -1.3937 14 6 3.4631 -1.2506 0.6883 15 6 2.0789 -0.7953 1.2139 16 1 1.4447 -1.6531 1.4381 17 7 2.2213 0.0697 2.3876 18 6 2.2516 -0.4693 3.6225 19 8 2.1604 -1.6706 3.7621 20 6 2.3987 0.4207 4.8297 21 1 1.5536 1.1039 4.9134 22 6 3.7355 1.1966 4.7856 23 6 4.1892 1.2421 6.2280 24 8 5.0379 1.9896 6.6660 25 7 3.5115 0.3299 6.9519 26 6 3.6973 0.1125 8.3887 27 6 2.5631 -0.4170 6.1172 28 1 -0.3634 0.4628 0.9176 29 1 -0.3633 0.5633 -0.8595 30 1 -0.3634 -1.0260 -0.0579 31 1 1.3129 -1.4760 -1.5774 32 1 2.3741 -0.1026 -1.9977 33 1 6.1384 -3.3327 0.7272 34 1 4.1935 -0.4491 0.7994 35 1 3.7951 -2.1435 1.2180 36 1 2.2940 1.0306 2.2760 37 1 4.4644 0.6661 4.1729 38 1 3.5787 2.2051 4.4029 39 1 4.4698 -0.6404 8.5453 40 1 3.9996 1.0470 8.8614 41 1 2.7608 -0.2307 8.8284 42 1 1.6055 -0.5141 6.6289 43 1 2.9638 -1.4021 5.8778 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001079795735.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:11:15 Heat of formation + Delta-G solvation = -40.824820 kcal Electronic energy + Delta-G solvation = -24481.356709 eV Core-core repulsion = 20948.267151 eV Total energy + Delta-G solvation = -3533.089558 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.80852 -39.28458 -37.63743 -36.25188 -34.03455 -33.15807 -32.47019 -30.38619 -28.23522 -27.70918 -26.77982 -25.65044 -23.97072 -22.81259 -20.54149 -20.15698 -19.65792 -19.38087 -17.50769 -17.03284 -16.82637 -15.94899 -15.74605 -15.35184 -14.99030 -14.65955 -13.92604 -13.86635 -13.76526 -13.64594 -13.16935 -13.01091 -12.90772 -12.55912 -12.52227 -12.46148 -12.18681 -11.74869 -11.67090 -11.47828 -11.25145 -11.11138 -10.81349 -10.67787 -10.38208 -10.09985 -9.99051 -9.80451 -9.77209 -9.52454 -8.86502 -8.66714 -8.53115 -6.85359 -5.64799 -3.08251 2.45391 2.77581 2.80885 3.35822 3.40900 3.45854 3.48747 4.10063 4.23081 4.48744 4.65692 4.74749 5.00548 5.06965 5.13322 5.18341 5.27482 5.34361 5.39752 5.44863 5.51283 5.52362 5.63598 5.71622 5.80178 5.91957 6.00226 6.11327 6.19380 6.30703 6.33863 6.43950 6.63703 6.73721 6.89717 6.90706 7.41210 7.61210 7.76618 7.88825 8.01629 8.35483 8.46157 9.20444 9.81790 10.44475 11.38251 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.015617 B = 0.004196 C = 0.003587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.523654 B = 6671.018876 C = 7804.046223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.111 4.111 3 H 0.074 0.926 4 C 0.141 3.859 5 N -0.603 5.603 6 C -0.226 4.226 7 H 0.079 0.921 8 C -0.009 4.009 9 N -0.918 5.918 10 Si 0.914 3.086 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.290 1.290 14 C 0.149 3.851 15 C 0.119 3.881 16 H 0.092 0.908 17 N -0.709 5.709 18 C 0.523 3.477 19 O -0.528 6.528 20 C -0.123 4.123 21 H 0.116 0.884 22 C -0.147 4.147 23 C 0.521 3.479 24 O -0.532 6.532 25 N -0.626 5.626 26 C 0.097 3.903 27 C 0.118 3.882 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.027 0.973 32 H 0.023 0.977 33 H 0.252 0.748 34 H 0.013 0.987 35 H 0.112 0.888 36 H 0.395 0.605 37 H 0.116 0.884 38 H 0.110 0.890 39 H 0.057 0.943 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.114 9.051 10.750 17.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.131 4.131 3 H 0.092 0.908 4 C 0.015 3.985 5 N -0.330 5.330 6 C -0.355 4.355 7 H 0.097 0.903 8 C -0.205 4.205 9 N -0.566 5.566 10 Si 0.745 3.255 11 H -0.205 1.205 12 H -0.218 1.218 13 H -0.217 1.217 14 C 0.023 3.977 15 C 0.014 3.986 16 H 0.110 0.890 17 N -0.358 5.358 18 C 0.307 3.693 19 O -0.404 6.404 20 C -0.145 4.145 21 H 0.134 0.866 22 C -0.188 4.188 23 C 0.309 3.691 24 O -0.409 6.409 25 N -0.361 5.361 26 C -0.045 4.045 27 C -0.005 4.005 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.045 0.955 32 H 0.041 0.959 33 H 0.063 0.937 34 H 0.031 0.969 35 H 0.130 0.870 36 H 0.229 0.771 37 H 0.134 0.866 38 H 0.128 0.872 39 H 0.075 0.925 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.102 0.898 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -9.541 8.396 11.165 16.917 hybrid contribution 0.580 -0.068 -0.618 0.850 sum -8.961 8.328 10.547 16.152 Atomic orbital electron populations 1.21740 0.94939 1.01907 1.00882 1.22429 0.95217 0.99181 0.96272 0.90773 1.21345 0.90292 0.93177 0.93728 1.44404 1.30859 1.50510 1.07186 1.19109 1.06277 1.17155 0.92919 0.90286 1.24811 0.98766 1.00529 0.96386 1.69802 1.29929 1.46041 1.10845 0.86007 0.80006 0.80455 0.79066 1.20495 1.21755 1.21680 1.22242 0.89256 1.01149 0.85092 1.22741 1.01164 0.92328 0.82403 0.88990 1.45841 1.73763 1.10443 1.05795 1.19905 0.76847 0.88566 0.83998 1.90754 1.48952 1.14840 1.85856 1.22236 0.99655 0.98185 0.94387 0.86625 1.22376 0.97192 1.03396 0.95805 1.20859 0.80572 0.79150 0.88505 1.90724 1.32155 1.41376 1.76640 1.48279 1.40878 1.37771 1.09161 1.21539 1.01827 1.02303 0.78835 1.22001 0.93484 0.96019 0.88990 0.93116 0.92867 0.92461 0.95464 0.95868 0.93705 0.96889 0.87032 0.77099 0.86595 0.87180 0.92452 0.90749 0.90955 0.89797 0.88759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 9.16 37.16 0.34 -1.39 16 2 C -0.11 -1.75 3.19 -88.79 -0.28 -2.03 16 3 H 0.07 1.05 8.00 -51.93 -0.42 0.64 16 4 C 0.14 2.81 6.84 -3.06 -0.02 2.79 16 5 N -0.60 -15.23 3.40 -170.04 -0.58 -15.81 16 6 C -0.23 -6.29 10.27 -15.06 -0.15 -6.45 16 7 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 8 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 9 N -0.92 -27.12 10.09 55.49 0.56 -26.56 16 10 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 14 C 0.15 3.55 5.58 -2.50 -0.01 3.53 16 15 C 0.12 2.14 2.81 -65.78 -0.19 1.95 16 16 H 0.09 1.85 7.54 -51.93 -0.39 1.46 16 17 N -0.71 -9.88 5.16 -51.73 -0.27 -10.15 16 18 C 0.52 7.48 7.07 -10.98 -0.08 7.41 16 19 O -0.53 -9.95 15.26 5.56 0.08 -9.87 16 20 C -0.12 -1.24 3.55 -90.14 -0.32 -1.55 16 21 H 0.12 0.82 8.14 -51.93 -0.42 0.40 16 22 C -0.15 -1.60 6.36 -26.74 -0.17 -1.77 16 23 C 0.52 6.93 8.04 -10.72 -0.09 6.84 16 24 O -0.53 -8.98 17.61 5.56 0.10 -8.88 16 25 N -0.63 -6.98 3.34 -180.19 -0.60 -7.58 16 26 C 0.10 0.84 10.97 59.85 0.66 1.50 16 27 C 0.12 1.22 6.67 -3.12 -0.02 1.20 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.77 8.06 -51.93 -0.42 0.35 16 31 H 0.03 0.54 7.76 -51.93 -0.40 0.14 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 34 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.11 3.16 5.88 -51.93 -0.31 2.86 16 36 H 0.40 4.22 8.54 -40.82 -0.35 3.87 16 37 H 0.12 1.45 7.89 -51.93 -0.41 1.04 16 38 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.67 7.94 -51.93 -0.41 0.26 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.09 1.19 7.06 -51.92 -0.37 0.82 16 LS Contribution 349.80 15.07 5.27 5.27 Total: -1.00 -34.97 349.80 -7.71 -42.68 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -6.82 Total: 2.02 kcal Atomic # 6 Polarization: 12.11 SS G_CDS: -0.43 Total: 11.68 kcal Atomic # 7 Polarization: -59.21 SS G_CDS: -0.89 Total: -60.09 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: 0.18 Total: -18.75 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.97 -7.71 -42.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079795735.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.853 kcal (2) G-P(sol) polarization free energy of solvation -34.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds