Wall clock time and date at job start Tue Mar 31 2020 04:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 110.64017 * 2 1 4 4 C 1.54319 * 110.72218 * 236.85783 * 2 1 3 5 5 N 1.47026 * 107.27208 * 219.44641 * 4 2 1 6 6 C 1.36932 * 125.65201 * 178.90283 * 5 4 2 7 7 H 1.07997 * 120.00041 * 0.02562 * 6 5 4 8 8 C 1.38810 * 120.00423 * 179.97438 * 6 5 4 9 9 N 1.31623 * 119.99715 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00287 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47018 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.46774 * 120.00475 * 10 8 6 13 13 H 1.48497 * 109.47147 * 240.00442 * 10 8 6 14 14 C 1.47428 * 108.70112 * 358.93560 * 5 4 2 15 15 C 1.55118 * 104.94414 * 24.00601 * 14 5 4 16 16 H 1.09004 * 110.93289 * 81.21359 * 15 14 5 17 17 N 1.46492 * 111.16628 * 205.12985 * 15 14 5 18 18 C 1.34782 * 120.00266 * 267.17331 * 17 15 14 19 19 O 1.21274 * 119.99571 * 359.97438 * 18 17 15 20 20 C 1.50696 * 120.00074 * 179.97438 * 18 17 15 21 21 H 1.08996 * 110.86092 * 297.66036 * 20 18 17 22 22 C 1.54632 * 110.97325 * 61.45290 * 20 18 17 23 23 C 1.51281 * 104.19892 * 142.91522 * 22 20 18 24 24 O 1.21273 * 124.94132 * 163.71293 * 23 22 20 25 25 N 1.34422 * 110.11538 * 343.74702 * 23 22 20 26 26 C 1.46491 * 124.34882 * 179.57096 * 25 23 22 27 27 C 1.46768 * 111.29723 * 359.59462 * 25 23 22 28 28 H 1.09002 * 109.47153 * 179.30077 * 1 2 3 29 29 H 1.09001 * 109.46832 * 59.30268 * 1 2 3 30 30 H 1.09004 * 109.47261 * 299.30249 * 1 2 3 31 31 H 1.09001 * 109.88102 * 338.85707 * 4 2 1 32 32 H 1.08997 * 109.89082 * 99.87264 * 4 2 1 33 33 H 0.97001 * 119.99783 * 179.97438 * 9 8 6 34 34 H 1.09003 * 110.36619 * 142.96814 * 14 5 4 35 35 H 1.09004 * 110.37083 * 265.18300 * 14 5 4 36 36 H 0.97004 * 120.00365 * 87.17024 * 17 15 14 37 37 H 1.09004 * 110.48478 * 261.59886 * 22 20 18 38 38 H 1.09001 * 110.48322 * 24.23485 * 22 20 18 39 39 H 1.08999 * 109.47636 * 359.97438 * 26 25 23 40 40 H 1.09006 * 109.47274 * 119.97958 * 26 25 23 41 41 H 1.09002 * 109.47032 * 239.97334 * 26 25 23 42 42 H 1.09002 * 110.24389 * 258.00986 * 27 25 23 43 43 H 1.09005 * 110.24267 * 136.01970 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0760 -0.7891 -1.2085 5 7 3.2445 -1.5495 -0.7415 6 6 4.0035 -2.3955 -1.5053 7 1 3.7601 -2.5480 -2.5463 8 6 5.0863 -3.0563 -0.9417 9 7 5.3833 -2.8701 0.3270 10 14 6.1212 -4.2110 -1.9835 11 1 5.5825 -4.2465 -3.3669 12 1 7.5252 -3.7279 -2.0116 13 1 6.0790 -5.5759 -1.4001 14 6 3.4633 -1.2509 0.6855 15 6 2.0790 -0.7933 1.2152 16 1 1.4452 -1.6511 1.4404 17 7 2.2214 0.0738 2.3874 18 6 2.1873 -0.4565 3.6260 19 8 2.0382 -1.6514 3.7702 20 6 2.3343 0.4354 4.8318 21 1 3.3072 0.9269 4.8346 22 6 1.1898 1.4733 4.8954 23 6 0.8839 1.5982 6.3717 24 8 0.2511 2.5016 6.8759 25 7 1.4161 0.5626 7.0434 26 6 1.3151 0.3781 8.4931 27 6 2.1118 -0.3592 6.1377 28 1 -0.3633 -1.0276 -0.0125 29 1 -0.3633 0.5246 -0.8837 30 1 -0.3634 0.5030 0.8962 31 1 1.3130 -1.4732 -1.5800 32 1 2.3716 -0.0992 -1.9990 33 1 6.1398 -3.3321 0.7209 34 1 3.7960 -2.1446 1.2135 35 1 4.1946 -0.4504 0.7979 36 1 2.3403 1.0296 2.2721 37 1 1.5200 2.4305 4.4918 38 1 0.3159 1.1110 4.3540 39 1 0.7493 1.2031 8.9259 40 1 0.8063 -0.5623 8.7052 41 1 2.3148 0.3562 8.9271 42 1 1.4942 -1.2364 5.9449 43 1 3.0690 -0.6577 6.5655 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001079795736.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:11:17 Heat of formation + Delta-G solvation = -66.411116 kcal Electronic energy + Delta-G solvation = -24362.383479 eV Core-core repulsion = 20828.184416 eV Total energy + Delta-G solvation = -3534.199063 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.85983 -40.54809 -39.12500 -37.32475 -35.63631 -34.47401 -33.68054 -32.12519 -29.68009 -28.70913 -27.80986 -27.27008 -25.45299 -24.03731 -22.07125 -21.54484 -20.82794 -20.52389 -18.90442 -18.53287 -17.86780 -17.35926 -16.98832 -16.69265 -16.36843 -15.86202 -15.58027 -15.18328 -14.75937 -14.64052 -14.46637 -14.35060 -14.27632 -13.91212 -13.78343 -13.36571 -13.34456 -13.16097 -13.03022 -12.85062 -12.58964 -12.48205 -12.37199 -12.13236 -11.98526 -11.82680 -11.61232 -11.38281 -11.19167 -10.77173 -10.73908 -9.95268 -9.77166 -8.87639 -7.76360 -5.22075 1.46038 1.46424 1.47740 1.57906 1.62244 1.90030 2.23965 2.50701 3.17066 3.32383 3.33689 3.67718 3.71977 3.87226 3.89188 4.07892 4.13423 4.22530 4.36735 4.45569 4.58086 4.61102 4.65450 4.67774 4.69678 4.79944 4.85140 4.91972 4.93632 5.06793 5.12000 5.25747 5.33030 5.44311 5.47652 5.53023 5.68772 5.84169 6.00174 6.30946 6.63003 7.04798 7.09876 7.32354 7.78718 8.40615 9.24155 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.022190 B = 0.003640 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.549075 B = 7689.504827 C = 8679.598289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.093 4.093 3 H 0.100 0.900 4 C 0.132 3.868 5 N -0.627 5.627 6 C -0.238 4.238 7 H 0.083 0.917 8 C -0.068 4.068 9 N -0.947 5.947 10 Si 0.979 3.021 11 H -0.265 1.265 12 H -0.291 1.291 13 H -0.294 1.294 14 C 0.155 3.845 15 C 0.137 3.863 16 H 0.069 0.931 17 N -0.695 5.695 18 C 0.524 3.476 19 O -0.578 6.578 20 C -0.109 4.109 21 H 0.147 0.853 22 C -0.135 4.135 23 C 0.513 3.487 24 O -0.576 6.576 25 N -0.621 5.621 26 C 0.086 3.914 27 C 0.117 3.883 28 H 0.043 0.957 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.027 0.973 32 H 0.031 0.969 33 H 0.245 0.755 34 H 0.062 0.938 35 H -0.005 1.005 36 H 0.416 0.584 37 H 0.139 0.861 38 H 0.114 0.886 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.199 10.449 10.382 16.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.113 4.113 3 H 0.118 0.882 4 C 0.007 3.993 5 N -0.354 5.354 6 C -0.367 4.367 7 H 0.101 0.899 8 C -0.261 4.261 9 N -0.597 5.597 10 Si 0.808 3.192 11 H -0.189 1.189 12 H -0.218 1.218 13 H -0.221 1.221 14 C 0.029 3.971 15 C 0.030 3.970 16 H 0.087 0.913 17 N -0.346 5.346 18 C 0.310 3.690 19 O -0.457 6.457 20 C -0.131 4.131 21 H 0.165 0.835 22 C -0.175 4.175 23 C 0.302 3.698 24 O -0.457 6.457 25 N -0.354 5.354 26 C -0.055 4.055 27 C -0.006 4.006 28 H 0.062 0.938 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.046 0.954 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.080 0.920 35 H 0.013 0.987 36 H 0.254 0.746 37 H 0.157 0.843 38 H 0.132 0.868 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.101 0.899 42 H 0.094 0.906 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -8.480 9.918 10.826 16.955 hybrid contribution 1.005 -0.650 -0.532 1.310 sum -7.475 9.267 10.294 15.739 Atomic orbital electron populations 1.21698 0.92180 1.01787 1.03101 1.22369 0.97282 0.99165 0.92465 0.88213 1.21603 0.88612 0.93293 0.95839 1.44697 1.32034 1.50830 1.07811 1.19502 1.06473 1.17288 0.93482 0.89890 1.25654 1.00320 1.02483 0.97603 1.70099 1.30121 1.47046 1.12387 0.84995 0.78106 0.77936 0.78211 1.18912 1.21812 1.22135 1.21951 0.92107 0.98433 0.84633 1.22178 0.97147 0.92985 0.84665 0.91288 1.45620 1.72877 1.11647 1.04475 1.20580 0.75262 0.88260 0.84889 1.90741 1.50632 1.17757 1.86580 1.22184 1.03146 0.96028 0.91719 0.83538 1.22368 0.99522 1.02128 0.93465 1.21209 0.77537 0.80682 0.90420 1.90701 1.42763 1.36761 1.75429 1.48363 1.54154 1.24227 1.08705 1.21751 1.03502 1.02930 0.77277 1.21991 0.99032 0.91889 0.87650 0.93797 0.90681 0.90895 0.95448 0.95073 0.94555 0.91992 0.98736 0.74623 0.84288 0.86826 0.90793 0.90737 0.89869 0.90578 0.87896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 9.14 71.98 0.66 -2.27 16 2 C -0.09 -2.72 3.19 -9.61 -0.03 -2.75 16 3 H 0.10 2.44 8.00 -2.38 -0.02 2.42 16 4 C 0.13 5.11 6.84 86.73 0.59 5.71 16 5 N -0.63 -31.95 3.40 -691.56 -2.35 -34.30 16 6 C -0.24 -13.37 10.27 84.03 0.86 -12.51 16 7 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 8 C -0.07 -3.89 5.49 84.86 0.47 -3.43 16 9 N -0.95 -57.28 10.09 21.65 0.22 -57.06 16 10 Si 0.98 45.96 29.55 68.60 2.03 47.99 16 11 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 12 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 13 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 14 C 0.16 7.55 5.59 86.93 0.49 8.03 16 15 C 0.14 4.87 2.88 46.46 0.13 5.00 16 16 H 0.07 2.84 7.45 -2.38 -0.02 2.82 16 17 N -0.70 -18.15 5.16 -435.63 -2.25 -20.39 16 18 C 0.52 14.31 7.07 87.65 0.62 14.93 16 19 O -0.58 -21.91 15.21 -3.01 -0.05 -21.96 16 20 C -0.11 -1.92 3.54 -10.48 -0.04 -1.96 16 21 H 0.15 1.88 8.14 -2.39 -0.02 1.86 16 22 C -0.13 -2.10 6.37 30.59 0.19 -1.90 16 23 C 0.51 11.35 8.02 87.90 0.71 12.06 16 24 O -0.58 -17.16 17.35 -3.01 -0.05 -17.21 16 25 N -0.62 -11.83 3.33 -842.91 -2.81 -14.64 16 26 C 0.09 1.28 11.14 127.77 1.42 2.70 16 27 C 0.12 2.19 6.66 86.83 0.58 2.76 16 28 H 0.04 1.11 8.12 -2.39 -0.02 1.09 16 29 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 31 H 0.03 1.06 7.80 -2.39 -0.02 1.04 16 32 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.24 14.43 8.31 -92.71 -0.77 13.66 16 34 H 0.06 3.66 5.87 -2.39 -0.01 3.64 16 35 H -0.01 -0.27 8.14 -2.38 -0.02 -0.29 16 36 H 0.42 7.51 8.56 -92.71 -0.79 6.72 16 37 H 0.14 1.43 8.14 -2.38 -0.02 1.41 16 38 H 0.11 1.76 7.89 -2.39 -0.02 1.74 16 39 H 0.07 1.24 7.53 -2.39 -0.02 1.22 16 40 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 41 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.08 1.74 7.06 -2.39 -0.02 1.72 16 43 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 Total: -1.00 -79.06 349.32 1.61 -77.45 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: 0.22 Total: 13.75 kcal Atomic # 6 Polarization: 19.72 SS G_CDS: 6.65 Total: 26.38 kcal Atomic # 7 Polarization: -119.21 SS G_CDS: -7.19 Total: -126.40 kcal Atomic # 8 Polarization: -39.07 SS G_CDS: -0.10 Total: -39.17 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -79.06 1.61 -77.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001079795736.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.038 kcal (2) G-P(sol) polarization free energy of solvation -79.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds