Wall clock time and date at job start Tue Mar 31 2020 04:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 110.64587 * 2 1 4 4 C 1.54323 * 110.87117 * 236.74967 * 2 1 3 5 5 N 1.47032 * 107.27094 * 219.37417 * 4 2 1 6 6 C 1.36928 * 125.64633 * 178.99684 * 5 4 2 7 7 H 1.08000 * 120.00294 * 0.02562 * 6 5 4 8 8 C 1.38814 * 119.99899 * 180.02562 * 6 5 4 9 9 N 1.31620 * 119.99939 * 359.97438 * 8 6 5 10 10 Si 1.86804 * 120.00376 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46857 * 89.99683 * 10 8 6 12 12 H 1.48496 * 109.47071 * 209.99990 * 10 8 6 13 13 H 1.48504 * 109.46686 * 329.99803 * 10 8 6 14 14 C 1.47470 * 108.71876 * 358.97616 * 5 4 2 15 15 C 1.54904 * 104.81272 * 24.06937 * 14 5 4 16 16 H 1.09010 * 111.00663 * 81.13966 * 15 14 5 17 17 N 1.46506 * 111.00453 * 204.94553 * 15 14 5 18 18 C 1.34770 * 119.99951 * 270.42171 * 17 15 14 19 19 O 1.21278 * 120.00572 * 359.97438 * 18 17 15 20 20 C 1.50706 * 119.99848 * 180.02562 * 18 17 15 21 21 H 1.08991 * 110.21746 * 41.92419 * 20 18 17 22 22 C 1.54478 * 110.24186 * 279.99856 * 20 18 17 23 23 C 1.54626 * 101.76474 * 215.58379 * 22 20 18 24 24 C 1.51276 * 104.19442 * 24.79856 * 23 22 20 25 25 O 1.21290 * 124.94248 * 163.75056 * 24 23 22 26 26 N 1.34419 * 110.11680 * 343.74700 * 24 23 22 27 27 C 1.46497 * 124.34968 * 179.57192 * 26 24 23 28 28 H 1.09000 * 109.47175 * 296.86138 * 1 2 3 29 29 H 1.09003 * 109.46862 * 56.85691 * 1 2 3 30 30 H 1.08995 * 109.47075 * 176.85724 * 1 2 3 31 31 H 1.08991 * 109.88496 * 338.79289 * 4 2 1 32 32 H 1.08998 * 109.88343 * 99.80307 * 4 2 1 33 33 H 0.97003 * 120.00146 * 180.02562 * 9 8 6 34 34 H 1.08999 * 110.34632 * 265.24724 * 14 5 4 35 35 H 1.09002 * 110.40216 * 142.91880 * 14 5 4 36 36 H 0.97001 * 119.99257 * 90.41903 * 17 15 14 37 37 H 1.09007 * 110.97248 * 333.70126 * 22 20 18 38 38 H 1.08999 * 110.97201 * 97.42772 * 22 20 18 39 39 H 1.09002 * 110.48851 * 143.47963 * 23 22 20 40 40 H 1.08997 * 110.48788 * 265.98631 * 23 22 20 41 41 H 1.09002 * 109.47487 * 270.02437 * 27 26 24 42 42 H 1.09001 * 109.47392 * 30.02516 * 27 26 24 43 43 H 1.09003 * 109.47524 * 150.02737 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0798 -0.7906 -1.2059 5 7 3.2495 -1.5471 -0.7353 6 6 4.0126 -2.3916 -1.4964 7 1 3.7722 -2.5459 -2.5379 8 6 5.0955 -3.0495 -0.9293 9 7 5.3889 -2.8611 0.3399 10 14 6.1371 -4.2011 -1.9677 11 1 7.2462 -3.4368 -2.5931 12 1 6.6984 -5.2729 -1.1066 13 1 5.2947 -4.8090 -3.0289 14 6 3.4651 -1.2456 0.6921 15 6 2.0790 -0.7934 1.2151 16 1 1.4464 -1.6525 1.4389 17 7 2.2175 0.0727 2.3886 18 6 2.2470 -0.4656 3.6238 19 8 2.1584 -1.6670 3.7640 20 6 2.3889 0.4254 4.8309 21 1 1.7664 1.3131 4.7191 22 6 3.8669 0.8300 5.0257 23 6 3.9847 0.8611 6.5672 24 6 2.8954 -0.0754 7.0414 25 8 2.8230 -0.5490 8.1557 26 7 2.0194 -0.3061 6.0483 27 6 0.8469 -1.1764 6.1660 28 1 -0.3633 0.4643 0.9168 29 1 -0.3633 0.5619 -0.8605 30 1 -0.3633 -1.0261 -0.0563 31 1 1.3191 -1.4773 -1.5770 32 1 2.3750 -0.1018 -1.9974 33 1 6.1458 -3.3206 0.7361 34 1 4.1934 -0.4423 0.8039 35 1 3.7984 -2.1374 1.2227 36 1 2.2880 1.0337 2.2764 37 1 4.5356 0.0827 4.5984 38 1 4.0615 1.8140 4.5992 39 1 4.9633 0.4988 6.8824 40 1 3.8135 1.8699 6.9426 41 1 1.1196 -2.1936 5.8848 42 1 0.4897 -1.1676 7.1958 43 1 0.0588 -0.8157 5.5050 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001080281026.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:10:48 Heat of formation + Delta-G solvation = -37.146936 kcal Electronic energy + Delta-G solvation = -24763.761780 eV Core-core repulsion = 21230.831707 eV Total energy + Delta-G solvation = -3532.930073 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.89165 -39.18205 -37.62168 -36.09957 -34.06852 -32.99061 -32.53393 -30.40968 -29.03855 -27.21786 -26.66547 -25.66531 -23.76448 -22.62435 -20.91975 -20.18141 -19.79330 -19.26260 -17.55348 -17.07065 -16.75121 -16.02477 -15.83030 -15.01886 -14.96664 -14.57510 -13.99131 -13.85126 -13.76337 -13.54100 -13.07276 -12.98877 -12.80090 -12.60155 -12.51941 -12.36429 -12.12045 -11.89143 -11.76519 -11.29130 -11.28090 -11.12723 -10.81514 -10.68806 -10.41819 -10.02592 -9.97313 -9.83093 -9.80859 -9.70124 -8.72262 -8.68205 -8.52622 -6.87433 -5.66436 -3.10007 2.47293 2.69602 2.87736 3.38244 3.40402 3.44596 3.47068 4.15348 4.27293 4.47071 4.60977 4.75821 4.90741 5.04970 5.16320 5.24425 5.25128 5.37482 5.48680 5.50406 5.55865 5.62871 5.69054 5.81001 5.89387 5.92571 5.97852 6.08685 6.16709 6.31051 6.32972 6.41386 6.61576 6.70790 6.87621 6.98911 7.38951 7.58904 7.73542 7.86867 8.07917 8.33688 8.44772 9.18627 9.79984 10.42573 11.36526 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.016728 B = 0.004346 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.445549 B = 6440.797746 C = 7479.990476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.111 4.111 3 H 0.074 0.926 4 C 0.141 3.859 5 N -0.603 5.603 6 C -0.228 4.228 7 H 0.079 0.921 8 C -0.009 4.009 9 N -0.918 5.918 10 Si 0.914 3.086 11 H -0.289 1.289 12 H -0.290 1.290 13 H -0.281 1.281 14 C 0.150 3.850 15 C 0.120 3.880 16 H 0.091 0.909 17 N -0.708 5.708 18 C 0.503 3.497 19 O -0.519 6.519 20 C 0.113 3.887 21 H 0.101 0.899 22 C -0.122 4.122 23 C -0.152 4.152 24 C 0.519 3.481 25 O -0.535 6.535 26 N -0.599 5.599 27 C 0.101 3.899 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.027 0.973 32 H 0.024 0.976 33 H 0.253 0.747 34 H 0.013 0.987 35 H 0.112 0.888 36 H 0.395 0.605 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.114 12.658 7.378 16.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.131 4.131 3 H 0.092 0.908 4 C 0.015 3.985 5 N -0.329 5.329 6 C -0.356 4.356 7 H 0.097 0.903 8 C -0.204 4.204 9 N -0.566 5.566 10 Si 0.745 3.255 11 H -0.216 1.216 12 H -0.216 1.216 13 H -0.206 1.206 14 C 0.023 3.977 15 C 0.015 3.985 16 H 0.109 0.891 17 N -0.359 5.359 18 C 0.286 3.714 19 O -0.393 6.393 20 C 0.005 3.995 21 H 0.119 0.881 22 C -0.160 4.160 23 C -0.193 4.193 24 C 0.307 3.693 25 O -0.412 6.412 26 N -0.333 5.333 27 C -0.040 4.040 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.045 0.955 32 H 0.041 0.959 33 H 0.064 0.936 34 H 0.031 0.969 35 H 0.129 0.871 36 H 0.228 0.772 37 H 0.113 0.887 38 H 0.119 0.881 39 H 0.124 0.876 40 H 0.124 0.876 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.123 11.298 8.086 16.094 hybrid contribution 0.587 -0.013 -0.833 1.019 sum -7.536 11.285 7.254 15.387 Atomic orbital electron populations 1.21740 0.94953 1.01913 1.00872 1.22426 0.95199 0.99169 0.96258 0.90779 1.21330 0.90273 0.93213 0.93691 1.44395 1.30716 1.50685 1.07146 1.19062 1.06213 1.17411 0.92903 0.90334 1.24811 0.98757 1.00508 0.96371 1.69791 1.29919 1.46124 1.10774 0.86077 0.80225 0.80282 0.78929 1.21608 1.21607 1.20635 1.22230 0.89209 1.01120 0.85090 1.22730 1.01180 0.92290 0.82338 0.89106 1.45846 1.73986 1.10373 1.05724 1.20471 0.77438 0.89172 0.84273 1.90764 1.48069 1.14745 1.85765 1.21667 0.98560 0.94438 0.84807 0.88099 1.22628 0.93450 1.04242 0.95723 1.22348 0.99921 1.00961 0.96030 1.20837 0.83009 0.81301 0.84137 1.90719 1.75660 1.54108 1.20667 1.47831 1.26869 1.47101 1.11494 1.21554 0.85834 0.94773 1.01866 0.93144 0.92835 0.92485 0.95511 0.95858 0.93650 0.96890 0.87077 0.77164 0.88713 0.88115 0.87563 0.87551 0.91196 0.91070 0.91524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.17 37.16 0.34 -1.38 16 2 C -0.11 -1.72 3.18 -88.78 -0.28 -2.00 16 3 H 0.07 1.02 8.00 -51.93 -0.42 0.61 16 4 C 0.14 2.79 6.84 -3.06 -0.02 2.77 16 5 N -0.60 -15.13 3.40 -170.04 -0.58 -15.70 16 6 C -0.23 -6.30 10.27 -15.06 -0.15 -6.45 16 7 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 8 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 9 N -0.92 -26.96 10.09 55.49 0.56 -26.40 16 10 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 14 C 0.15 3.54 5.58 -2.51 -0.01 3.52 16 15 C 0.12 2.15 2.81 -65.78 -0.19 1.96 16 16 H 0.09 1.84 7.54 -51.92 -0.39 1.45 16 17 N -0.71 -9.74 5.21 -51.73 -0.27 -10.01 16 18 C 0.50 7.43 6.73 -10.99 -0.07 7.35 16 19 O -0.52 -10.22 14.62 5.56 0.08 -10.14 16 20 C 0.11 1.22 3.71 -68.16 -0.25 0.96 16 21 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 22 C -0.12 -1.12 6.67 -25.10 -0.17 -1.28 16 23 C -0.15 -1.42 6.86 -26.75 -0.18 -1.61 16 24 C 0.52 7.16 8.02 -10.86 -0.09 7.07 16 25 O -0.53 -9.35 17.59 5.55 0.10 -9.25 16 26 N -0.60 -7.78 3.01 -174.03 -0.52 -8.30 16 27 C 0.10 1.28 9.56 59.85 0.57 1.85 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.77 8.07 -51.93 -0.42 0.35 16 31 H 0.03 0.53 7.78 -51.93 -0.40 0.13 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 34 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.11 3.15 5.88 -51.93 -0.31 2.84 16 36 H 0.39 3.97 8.54 -40.82 -0.35 3.62 16 37 H 0.09 1.10 7.91 -51.92 -0.41 0.69 16 38 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.11 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.07 1.04 7.46 -51.93 -0.39 0.65 16 42 H 0.07 0.84 7.92 -51.93 -0.41 0.43 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 348.21 15.07 5.25 5.25 Total: -1.00 -35.42 348.21 -7.86 -43.28 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -6.84 Total: 1.77 kcal Atomic # 6 Polarization: 13.05 SS G_CDS: -0.60 Total: 12.44 kcal Atomic # 7 Polarization: -59.61 SS G_CDS: -0.81 Total: -60.42 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: 0.18 Total: -19.39 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -35.42 -7.86 -43.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080281026.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.129 kcal (2) G-P(sol) polarization free energy of solvation -35.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds