Wall clock time and date at job start Tue Mar 31 2020 04:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 110.77940 * 2 1 4 4 C 1.54326 * 110.71716 * 236.76246 * 2 1 3 5 5 N 1.47030 * 107.26827 * 219.44100 * 4 2 1 6 6 C 1.36933 * 125.64568 * 178.89571 * 5 4 2 7 7 H 1.08000 * 120.00361 * 359.97438 * 6 5 4 8 8 C 1.38807 * 119.99853 * 180.02562 * 6 5 4 9 9 N 1.31624 * 120.00261 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 120.00193 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46950 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.46851 * 119.99955 * 10 8 6 13 13 H 1.48500 * 109.47266 * 240.00084 * 10 8 6 14 14 C 1.47418 * 108.70269 * 358.94272 * 5 4 2 15 15 C 1.54908 * 104.83613 * 24.12541 * 14 5 4 16 16 H 1.09004 * 111.03459 * 81.07810 * 15 14 5 17 17 N 1.46497 * 111.00966 * 204.91309 * 15 14 5 18 18 C 1.34768 * 120.00259 * 267.19893 * 17 15 14 19 19 O 1.21283 * 120.00383 * 359.97438 * 18 17 15 20 20 C 1.50704 * 120.00004 * 179.97438 * 18 17 15 21 21 H 1.08998 * 110.43773 * 298.91418 * 20 18 17 22 22 C 1.54631 * 110.48612 * 176.22802 * 20 18 17 23 23 C 1.54661 * 101.68464 * 216.31000 * 22 20 18 24 24 N 1.46765 * 105.38357 * 25.76826 * 23 22 20 25 25 C 1.46499 * 124.35294 * 162.85294 * 24 23 22 26 26 C 1.34425 * 111.30057 * 342.58957 * 24 23 22 27 27 O 1.21280 * 124.94392 * 180.65265 * 26 24 23 28 28 H 1.09001 * 109.47069 * 296.76000 * 1 2 3 29 29 H 1.09002 * 109.47202 * 56.76471 * 1 2 3 30 30 H 1.09008 * 109.47109 * 176.76332 * 1 2 3 31 31 H 1.09000 * 109.88792 * 338.85961 * 4 2 1 32 32 H 1.09000 * 109.88450 * 100.02678 * 4 2 1 33 33 H 0.96998 * 120.00119 * 179.97438 * 9 8 6 34 34 H 1.09003 * 110.36718 * 265.29141 * 14 5 4 35 35 H 1.08999 * 110.37104 * 142.96539 * 14 5 4 36 36 H 0.97002 * 119.99557 * 87.19740 * 17 15 14 37 37 H 1.08990 * 110.96857 * 334.64534 * 22 20 18 38 38 H 1.09004 * 110.96692 * 98.41227 * 22 20 18 39 39 H 1.09002 * 110.39990 * 266.74468 * 23 22 20 40 40 H 1.08992 * 110.18247 * 144.68258 * 23 22 20 41 41 H 1.09002 * 109.47391 * 179.72585 * 25 24 23 42 42 H 1.09001 * 109.46813 * 59.72641 * 25 24 23 43 43 H 1.09004 * 109.47041 * 299.72768 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9167 1.0191 0.0000 4 6 2.0759 -0.7912 -1.2073 5 7 3.2445 -1.5507 -0.7391 6 6 4.0033 -2.3981 -1.5015 7 1 3.7592 -2.5531 -2.5420 8 6 5.0856 -3.0587 -0.9366 9 7 5.3822 -2.8710 0.3320 10 14 6.1203 -4.2153 -1.9764 11 1 5.5822 -4.2523 -3.3600 12 1 7.5245 -3.7329 -2.0048 13 1 6.0773 -5.5794 -1.3913 14 6 3.4633 -1.2498 0.6874 15 6 2.0790 -0.7954 1.2137 16 1 1.4449 -1.6532 1.4379 17 7 2.2215 0.0696 2.3875 18 6 2.1873 -0.4628 3.6251 19 8 2.0382 -1.6580 3.7672 20 6 2.3345 0.4270 4.8325 21 1 3.3004 0.9318 4.8178 22 6 2.1691 -0.3935 6.1327 23 6 1.4293 0.6122 7.0456 24 7 0.7159 1.5141 6.1336 25 6 -0.3882 2.3900 6.5332 26 6 1.2097 1.4374 4.8857 27 8 0.8113 2.0838 3.9400 28 1 -0.3633 0.4627 0.9176 29 1 -0.3634 0.5632 -0.8596 30 1 -0.3634 -1.0261 -0.0580 31 1 1.3129 -1.4758 -1.5777 32 1 2.3740 -0.1024 -1.9978 33 1 6.1383 -3.3329 0.7267 34 1 4.1931 -0.4478 0.7983 35 1 3.7960 -2.1426 1.2168 36 1 2.3404 1.0255 2.2738 37 1 1.5660 -1.2843 5.9577 38 1 3.1394 -0.6574 6.5535 39 1 2.1426 1.1732 7.6494 40 1 0.7215 0.0874 7.6872 41 1 -0.7345 2.9559 5.6683 42 1 -0.0443 3.0794 7.3044 43 1 -1.2075 1.7866 6.9243 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001080288131.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:11:04 Heat of formation + Delta-G solvation = -64.606233 kcal Electronic energy + Delta-G solvation = -24734.651660 eV Core-core repulsion = 21200.530862 eV Total energy + Delta-G solvation = -3534.120798 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.00543 -40.42265 -39.07694 -37.50135 -35.63103 -34.36901 -33.73079 -32.18417 -30.00009 -28.62398 -27.70573 -27.33786 -25.41333 -23.56169 -22.17237 -21.66028 -21.31707 -20.42786 -18.93889 -18.45959 -17.89207 -17.55147 -17.13615 -16.87906 -16.22035 -15.66645 -15.55790 -15.22645 -14.76139 -14.64963 -14.47670 -14.38352 -14.19812 -13.90287 -13.72764 -13.41516 -13.38794 -13.12679 -13.05344 -12.87707 -12.70677 -12.59536 -12.16541 -12.06609 -12.02668 -11.85657 -11.67903 -11.46041 -11.12229 -10.87902 -10.78257 -9.99161 -9.73400 -8.91717 -7.77764 -5.24835 1.23376 1.45251 1.47454 1.56891 1.57863 2.00447 2.25833 2.49709 3.20129 3.31577 3.34292 3.64174 3.68500 3.88233 3.94085 3.99680 4.07241 4.18987 4.39042 4.43903 4.49064 4.57855 4.61430 4.67811 4.72701 4.84125 4.89438 4.97905 5.00481 5.04155 5.15049 5.18740 5.27283 5.40548 5.48374 5.49862 5.61396 5.77992 5.96000 6.26201 6.53487 6.99572 7.06323 7.21408 7.74631 8.38278 9.23420 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.023204 B = 0.004001 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.416165 B = 6995.857647 C = 7929.449249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.096 4.096 3 H 0.090 0.910 4 C 0.136 3.864 5 N -0.627 5.627 6 C -0.241 4.241 7 H 0.086 0.914 8 C -0.070 4.070 9 N -0.949 5.949 10 Si 0.984 3.016 11 H -0.264 1.264 12 H -0.290 1.290 13 H -0.292 1.292 14 C 0.160 3.840 15 C 0.135 3.865 16 H 0.068 0.932 17 N -0.694 5.694 18 C 0.522 3.478 19 O -0.574 6.574 20 C -0.145 4.145 21 H 0.157 0.843 22 C -0.114 4.114 23 C 0.106 3.894 24 N -0.618 5.618 25 C 0.089 3.911 26 C 0.520 3.480 27 O -0.556 6.556 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.049 0.951 31 H 0.033 0.967 32 H 0.033 0.967 33 H 0.246 0.754 34 H -0.008 1.008 35 H 0.066 0.934 36 H 0.411 0.589 37 H 0.077 0.923 38 H 0.118 0.882 39 H 0.107 0.893 40 H 0.104 0.896 41 H 0.066 0.934 42 H 0.089 0.911 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.211 12.029 15.967 22.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.115 4.115 3 H 0.108 0.892 4 C 0.010 3.990 5 N -0.353 5.353 6 C -0.370 4.370 7 H 0.104 0.896 8 C -0.262 4.262 9 N -0.599 5.599 10 Si 0.812 3.188 11 H -0.188 1.188 12 H -0.217 1.217 13 H -0.220 1.220 14 C 0.033 3.967 15 C 0.028 3.972 16 H 0.086 0.914 17 N -0.344 5.344 18 C 0.308 3.692 19 O -0.454 6.454 20 C -0.169 4.169 21 H 0.175 0.825 22 C -0.152 4.152 23 C -0.015 4.015 24 N -0.352 5.352 25 C -0.052 4.052 26 C 0.307 3.693 27 O -0.434 6.434 28 H 0.076 0.924 29 H 0.097 0.903 30 H 0.068 0.932 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.010 0.990 35 H 0.084 0.916 36 H 0.248 0.752 37 H 0.096 0.904 38 H 0.137 0.863 39 H 0.125 0.875 40 H 0.123 0.877 41 H 0.085 0.915 42 H 0.107 0.893 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.464 11.464 15.601 22.007 hybrid contribution 0.960 -0.348 -0.730 1.255 sum -9.504 11.116 14.871 20.857 Atomic orbital electron populations 1.21647 0.92354 1.01881 1.02518 1.22359 0.97280 0.98883 0.93014 0.89207 1.21571 0.88773 0.93272 0.95350 1.44708 1.32030 1.50865 1.07689 1.19545 1.06587 1.17249 0.93599 0.89612 1.25732 1.00310 1.02495 0.97661 1.70111 1.30171 1.47037 1.12533 0.84919 0.77955 0.77770 0.78120 1.18780 1.21715 1.21958 1.21868 0.91560 0.98337 0.84904 1.22208 0.97598 0.92789 0.84577 0.91428 1.45747 1.72209 1.11489 1.04936 1.20465 0.75595 0.88313 0.84873 1.90700 1.51001 1.17165 1.86509 1.22243 1.02260 0.97140 0.95291 0.82526 1.22677 1.04132 0.97656 0.90773 1.22442 0.96728 0.90486 0.91889 1.48262 1.35076 1.42576 1.09254 1.21776 0.88009 0.93858 1.01544 1.20468 0.83154 0.82349 0.83355 1.90712 1.64352 1.48659 1.39727 0.92435 0.90265 0.93214 0.94942 0.94858 0.94459 0.99012 0.91597 0.75234 0.90398 0.86326 0.87534 0.87732 0.91526 0.89288 0.90273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.77 9.16 71.98 0.66 -3.11 16 2 C -0.10 -3.49 3.20 -9.60 -0.03 -3.52 16 3 H 0.09 3.00 8.00 -2.39 -0.02 2.98 16 4 C 0.14 5.85 6.84 86.73 0.59 6.44 16 5 N -0.63 -34.23 3.39 -691.99 -2.35 -36.58 16 6 C -0.24 -14.11 10.27 84.03 0.86 -13.24 16 7 H 0.09 4.76 7.83 -2.91 -0.02 4.74 16 8 C -0.07 -4.12 5.49 84.86 0.47 -3.66 16 9 N -0.95 -59.58 10.09 21.65 0.22 -59.36 16 10 Si 0.98 47.30 29.55 68.60 2.03 49.33 16 11 H -0.26 -11.82 7.11 99.48 0.71 -11.12 16 12 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 13 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 14 C 0.16 8.56 5.58 86.86 0.48 9.04 16 15 C 0.13 5.77 2.87 46.38 0.13 5.90 16 16 H 0.07 3.23 7.44 -2.39 -0.02 3.21 16 17 N -0.69 -25.24 4.90 -435.98 -2.13 -27.38 16 18 C 0.52 18.59 7.16 87.66 0.63 19.22 16 19 O -0.57 -25.19 15.16 -3.04 -0.05 -25.24 16 20 C -0.15 -3.48 3.33 -11.54 -0.04 -3.52 16 21 H 0.16 3.00 8.14 -2.39 -0.02 2.98 16 22 C -0.11 -2.02 6.46 31.72 0.20 -1.82 16 23 C 0.11 1.15 7.36 86.89 0.64 1.78 16 24 N -0.62 -10.50 3.33 -842.52 -2.81 -13.31 16 25 C 0.09 1.07 11.14 127.77 1.42 2.49 16 26 C 0.52 12.84 7.44 87.90 0.65 13.50 16 27 O -0.56 -17.31 16.17 -3.03 -0.05 -17.35 16 28 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.05 1.53 8.06 -2.38 -0.02 1.51 16 31 H 0.03 1.37 7.77 -2.39 -0.02 1.35 16 32 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 34 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 35 H 0.07 4.15 5.87 -2.39 -0.01 4.14 16 36 H 0.41 13.27 7.78 -92.71 -0.72 12.55 16 37 H 0.08 1.80 7.05 -2.39 -0.02 1.79 16 38 H 0.12 1.59 8.14 -2.38 -0.02 1.57 16 39 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.07 1.06 7.53 -2.39 -0.02 1.04 16 42 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 43 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 Total: -1.00 -80.67 347.28 1.83 -78.84 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: 0.29 Total: 21.52 kcal Atomic # 6 Polarization: 22.84 SS G_CDS: 6.68 Total: 29.52 kcal Atomic # 7 Polarization: -129.55 SS G_CDS: -7.07 Total: -136.62 kcal Atomic # 8 Polarization: -42.50 SS G_CDS: -0.10 Total: -42.59 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.33 kcal Total: -80.67 1.83 -78.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001080288131.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.236 kcal (2) G-P(sol) polarization free energy of solvation -80.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds