Wall clock time and date at job start Tue Mar 31 2020 04:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 110.89353 * 2 1 4 4 C 1.54917 * 111.00343 * 236.11942 * 2 1 3 5 5 N 1.47423 * 104.83276 * 204.87784 * 4 2 1 6 6 C 1.34776 * 125.65051 * 204.08957 * 5 4 2 7 7 O 1.21277 * 120.00297 * 174.99867 * 6 5 4 8 8 C 1.50697 * 119.99813 * 355.00821 * 6 5 4 9 9 H 1.09008 * 110.85701 * 31.33504 * 8 6 5 10 10 C 1.54627 * 110.96884 * 267.54498 * 8 6 5 11 11 C 1.51282 * 104.19597 * 266.67984 * 10 8 6 12 12 O 1.21276 * 124.94101 * 163.78771 * 11 10 8 13 13 N 1.34423 * 110.11399 * 343.74431 * 11 10 8 14 14 C 1.46505 * 124.34803 * 179.56934 * 13 11 10 15 15 C 1.46761 * 111.30246 * 359.59851 * 13 11 10 16 16 C 1.47020 * 108.70241 * 24.12972 * 5 4 2 17 17 C 1.54328 * 107.40553 * 358.86064 * 16 5 4 18 18 H 1.09002 * 110.71481 * 96.24455 * 17 16 5 19 19 N 1.46498 * 110.72147 * 219.52128 * 17 16 5 20 20 C 1.36940 * 119.99937 * 273.54477 * 19 17 16 21 21 H 1.07994 * 120.00148 * 359.97438 * 20 19 17 22 22 C 1.38812 * 119.99692 * 179.97438 * 20 19 17 23 23 N 1.31618 * 119.99942 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99856 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46541 * 90.00217 * 24 22 20 26 26 H 1.48498 * 109.47409 * 210.00071 * 24 22 20 27 27 H 1.48499 * 109.47462 * 330.00711 * 24 22 20 28 28 H 1.08997 * 109.47363 * 182.42684 * 1 2 3 29 29 H 1.09002 * 109.46861 * 302.42769 * 1 2 3 30 30 H 1.09006 * 109.47127 * 62.42450 * 1 2 3 31 31 H 1.09001 * 110.36102 * 86.04143 * 4 2 1 32 32 H 1.08992 * 110.45913 * 323.76631 * 4 2 1 33 33 H 1.08996 * 110.48701 * 25.35696 * 10 8 6 34 34 H 1.09003 * 110.48763 * 148.00330 * 10 8 6 35 35 H 1.08997 * 109.46938 * 0.02807 * 14 13 11 36 36 H 1.08997 * 109.46388 * 120.02589 * 14 13 11 37 37 H 1.08999 * 109.47232 * 240.02868 * 14 13 11 38 38 H 1.09009 * 110.24192 * 258.01264 * 15 13 11 39 39 H 1.08999 * 110.25144 * 136.01560 * 15 13 11 40 40 H 1.09000 * 109.88658 * 118.35571 * 16 5 4 41 41 H 1.09001 * 109.88444 * 239.36267 * 16 5 4 42 42 H 0.96995 * 119.99539 * 93.54591 * 19 17 16 43 43 H 0.97003 * 119.99884 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0183 0.0000 4 6 2.0852 -0.8062 -1.2007 5 7 3.4275 -1.2420 -0.7743 6 6 4.4479 -1.5600 -1.5953 7 8 5.5391 -1.8195 -1.1342 8 6 4.2329 -1.5929 -3.0865 9 1 3.4799 -0.8639 -3.3862 10 6 3.8464 -3.0137 -3.5587 11 6 5.1640 -3.6461 -3.9490 12 8 5.3439 -4.8349 -4.1076 13 7 6.1062 -2.6986 -4.0955 14 6 7.4992 -2.9675 -4.4609 15 6 5.5603 -1.3601 -3.8417 16 6 3.4683 -1.2733 0.6950 17 6 2.0887 -0.8063 1.2053 18 1 1.4497 -1.6613 1.4261 19 7 2.2350 0.0515 2.3838 20 6 2.3132 -0.5070 3.6317 21 1 2.2666 -1.5798 3.7471 22 6 2.4524 0.3058 4.7483 23 7 2.5088 1.6132 4.6076 24 14 2.5584 -0.4559 6.4506 25 1 3.9795 -0.7317 6.7818 26 1 1.9907 0.4844 7.4500 27 1 1.7894 -1.7261 6.4734 28 1 -0.3634 -1.0267 0.0435 29 1 -0.3633 0.5511 0.8674 30 1 -0.3634 0.4757 -0.9110 31 1 2.1553 -0.1713 -2.0839 32 1 1.4528 -1.6702 -1.4046 33 1 3.3810 -3.5721 -2.7466 34 1 3.1787 -2.9614 -4.4187 35 1 7.6399 -4.0405 -4.5915 36 1 7.7360 -2.4539 -5.3927 37 1 8.1581 -2.6083 -3.6704 38 1 5.3730 -0.8444 -4.7836 39 1 6.2489 -0.7825 -3.2250 40 1 3.6665 -2.2885 1.0389 41 1 4.2451 -0.6007 1.0587 42 1 2.2765 1.0150 2.2801 43 1 2.6064 2.1812 5.3879 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082541884.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:12 Heat of formation + Delta-G solvation = -75.368787 kcal Electronic energy + Delta-G solvation = -24334.246160 eV Core-core repulsion = 20799.658663 eV Total energy + Delta-G solvation = -3534.587497 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.98287 -40.59759 -38.95367 -37.26895 -35.95023 -34.18040 -33.52882 -32.44745 -29.66977 -28.65109 -27.71971 -27.19148 -26.00894 -24.12805 -22.58959 -21.30740 -20.67093 -20.20581 -19.11814 -18.60911 -17.79150 -17.38667 -16.89384 -16.62521 -16.34712 -16.07403 -15.49849 -15.38864 -14.88363 -14.73888 -14.59171 -14.35856 -14.04436 -13.77675 -13.61229 -13.48167 -13.25966 -13.12776 -13.04782 -12.89133 -12.88396 -12.68152 -12.50504 -12.20312 -12.15599 -12.02183 -11.67985 -11.34953 -11.02719 -10.98839 -10.82498 -9.74477 -9.64999 -9.08340 -7.98372 -5.27496 1.42420 1.45641 1.47405 1.54896 1.56146 1.91829 2.10630 2.53800 3.22960 3.32249 3.38468 3.44795 3.62250 3.82699 3.85730 4.05022 4.25454 4.30817 4.33026 4.35179 4.46052 4.49896 4.60521 4.66789 4.70299 4.70631 4.78009 4.81456 4.86446 4.93136 4.98157 5.17544 5.18529 5.28611 5.40995 5.47999 5.51348 5.58340 6.06052 6.23911 6.57394 7.07016 7.11175 7.31005 8.04025 8.26755 9.24377 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.022644 B = 0.003447 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.244784 B = 8121.267915 C = 8698.357150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.105 4.105 3 H 0.074 0.926 4 C 0.107 3.893 5 N -0.608 5.608 6 C 0.518 3.482 7 O -0.591 6.591 8 C -0.108 4.108 9 H 0.172 0.828 10 C -0.128 4.128 11 C 0.501 3.499 12 O -0.589 6.589 13 N -0.620 5.620 14 C 0.090 3.910 15 C 0.118 3.882 16 C 0.092 3.908 17 C 0.170 3.830 18 H 0.066 0.934 19 N -0.722 5.722 20 C -0.245 4.245 21 H 0.074 0.926 22 C -0.068 4.068 23 N -0.965 5.965 24 Si 0.967 3.033 25 H -0.293 1.293 26 H -0.293 1.293 27 H -0.268 1.268 28 H 0.064 0.936 29 H 0.037 0.963 30 H 0.087 0.913 31 H 0.120 0.880 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.163 0.837 35 H 0.064 0.936 36 H 0.093 0.907 37 H 0.059 0.941 38 H 0.130 0.870 39 H 0.074 0.926 40 H 0.037 0.963 41 H 0.032 0.968 42 H 0.376 0.624 43 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.973 -2.295 -23.701 23.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.125 4.125 3 H 0.092 0.908 4 C -0.015 4.015 5 N -0.341 5.341 6 C 0.308 3.692 7 O -0.472 6.472 8 C -0.129 4.129 9 H 0.190 0.810 10 C -0.168 4.168 11 C 0.291 3.709 12 O -0.470 6.470 13 N -0.353 5.353 14 C -0.052 4.052 15 C -0.005 4.005 16 C -0.034 4.034 17 C 0.059 3.941 18 H 0.084 0.916 19 N -0.361 5.361 20 C -0.377 4.377 21 H 0.092 0.908 22 C -0.261 4.261 23 N -0.615 5.615 24 Si 0.796 3.204 25 H -0.220 1.220 26 H -0.219 1.219 27 H -0.193 1.193 28 H 0.083 0.917 29 H 0.056 0.944 30 H 0.106 0.894 31 H 0.138 0.862 32 H 0.117 0.883 33 H 0.114 0.886 34 H 0.180 0.820 35 H 0.083 0.917 36 H 0.112 0.888 37 H 0.078 0.922 38 H 0.148 0.852 39 H 0.092 0.908 40 H 0.055 0.945 41 H 0.050 0.950 42 H 0.209 0.791 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.174 -3.175 -23.446 23.689 hybrid contribution 0.853 -0.030 1.950 2.128 sum -0.321 -3.205 -21.496 21.736 Atomic orbital electron populations 1.21574 0.91995 1.02562 1.02356 1.22600 0.97657 0.98924 0.93278 0.90801 1.22748 0.81140 0.99660 0.97910 1.48599 1.13749 1.65499 1.06213 1.20915 0.82490 0.75978 0.89810 1.90716 1.26394 1.51409 1.78681 1.22438 1.01258 1.00637 0.88576 0.81020 1.22315 0.95474 0.93677 1.05361 1.21523 0.88496 0.85514 0.75410 1.90679 1.84685 1.17002 1.54679 1.48279 1.10609 1.08585 1.67794 1.21656 0.79789 1.02304 1.01423 1.22233 0.93367 0.83426 1.01429 1.22769 1.01312 0.99164 0.80185 1.21537 0.91588 0.93950 0.87011 0.91598 1.42456 1.86968 1.05286 1.01381 1.19588 1.40967 0.92087 0.85058 0.90831 1.25484 1.03380 0.95849 1.01401 1.69791 1.58613 1.03387 1.29677 0.85241 0.77334 0.77594 0.80210 1.22042 1.21937 1.19303 0.91693 0.94361 0.89447 0.86165 0.88305 0.88599 0.81971 0.91702 0.88808 0.92182 0.85211 0.90781 0.94497 0.94956 0.79113 0.93938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.63 9.30 71.98 0.67 -1.96 16 2 C -0.10 -2.61 3.25 -9.31 -0.03 -2.64 16 3 H 0.07 2.03 8.01 -2.39 -0.02 2.01 16 4 C 0.11 1.81 6.08 86.86 0.53 2.34 16 5 N -0.61 -16.43 3.33 -811.80 -2.70 -19.13 16 6 C 0.52 14.11 6.88 87.66 0.60 14.71 16 7 O -0.59 -22.79 16.39 -3.02 -0.05 -22.84 16 8 C -0.11 -1.53 3.12 -10.48 -0.03 -1.57 16 9 H 0.17 0.68 6.66 -2.38 -0.02 0.66 16 10 C -0.13 -1.96 6.40 30.59 0.20 -1.76 16 11 C 0.50 12.66 8.02 87.90 0.71 13.36 16 12 O -0.59 -20.35 17.35 -3.02 -0.05 -20.41 16 13 N -0.62 -12.95 3.33 -842.89 -2.81 -15.76 16 14 C 0.09 1.63 11.14 127.77 1.42 3.06 16 15 C 0.12 1.68 6.54 86.83 0.57 2.25 16 16 C 0.09 3.45 6.62 86.73 0.57 4.03 16 17 C 0.17 6.12 3.08 46.27 0.14 6.26 16 18 H 0.07 2.38 8.00 -2.39 -0.02 2.36 16 19 N -0.72 -34.66 5.18 -316.92 -1.64 -36.30 16 20 C -0.25 -13.31 9.98 84.03 0.84 -12.47 16 21 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 22 C -0.07 -3.86 5.50 84.86 0.47 -3.40 16 23 N -0.96 -57.88 13.06 21.65 0.28 -57.60 16 24 Si 0.97 45.96 29.55 68.60 2.03 47.99 16 25 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 26 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 27 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 28 H 0.06 1.22 8.12 -2.39 -0.02 1.20 16 29 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 31 H 0.12 1.00 6.92 -2.39 -0.02 0.99 16 32 H 0.10 1.23 8.04 -2.39 -0.02 1.21 16 33 H 0.10 1.73 7.90 -2.39 -0.02 1.71 16 34 H 0.16 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.06 1.39 7.53 -2.39 -0.02 1.37 16 36 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.13 0.69 8.14 -2.38 -0.02 0.67 16 39 H 0.07 1.35 7.51 -2.39 -0.02 1.33 16 40 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.03 1.46 8.03 -2.39 -0.02 1.44 16 42 H 0.38 19.39 7.72 -92.71 -0.72 18.67 16 43 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -83.46 352.98 2.00 -81.46 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: 0.29 Total: 20.39 kcal Atomic # 6 Polarization: 15.56 SS G_CDS: 6.65 Total: 22.21 kcal Atomic # 7 Polarization: -121.93 SS G_CDS: -6.87 Total: -128.79 kcal Atomic # 8 Polarization: -43.15 SS G_CDS: -0.10 Total: -43.25 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -83.46 2.00 -81.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082541884.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.087 kcal (2) G-P(sol) polarization free energy of solvation -83.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds