Wall clock time and date at job start Tue Mar 31 2020 04:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.92052 * 2 1 4 4 C 1.54909 * 111.00221 * 236.09926 * 2 1 3 5 5 N 1.47426 * 104.83381 * 204.91626 * 4 2 1 6 6 C 1.34778 * 125.64843 * 204.08968 * 5 4 2 7 7 O 1.21284 * 120.00097 * 0.02562 * 6 5 4 8 8 C 1.50702 * 119.99810 * 180.02562 * 6 5 4 9 9 H 1.09005 * 109.29904 * 319.58842 * 8 6 5 10 10 C 1.52918 * 109.29730 * 78.97048 * 8 6 5 11 11 C 1.53343 * 108.67530 * 171.06683 * 10 8 6 12 12 C 1.53077 * 108.42233 * 292.46852 * 11 10 8 13 13 C 1.50177 * 109.89084 * 48.89667 * 12 11 10 14 14 O 1.21278 * 118.24245 * 162.39577 * 13 12 11 15 15 N 1.33353 * 123.50803 * 342.42076 * 13 12 11 16 16 C 1.47018 * 108.70104 * 24.12870 * 5 4 2 17 17 C 1.54322 * 107.27336 * 358.94171 * 16 5 4 18 18 H 1.09002 * 110.71963 * 96.17078 * 17 16 5 19 19 N 1.46502 * 110.72235 * 219.26811 * 17 16 5 20 20 C 1.36943 * 119.99977 * 271.15808 * 19 17 16 21 21 H 1.07994 * 119.99567 * 359.97438 * 20 19 17 22 22 C 1.38808 * 119.99866 * 179.97438 * 20 19 17 23 23 N 1.31619 * 120.00443 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99960 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46924 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47349 * 119.99966 * 24 22 20 27 27 H 1.48501 * 109.47012 * 240.00228 * 24 22 20 28 28 H 1.08998 * 109.46949 * 296.09467 * 1 2 3 29 29 H 1.08994 * 109.47021 * 56.09642 * 1 2 3 30 30 H 1.09005 * 109.47193 * 176.10096 * 1 2 3 31 31 H 1.08998 * 110.36917 * 86.07337 * 4 2 1 32 32 H 1.09009 * 110.46209 * 323.79974 * 4 2 1 33 33 H 1.09007 * 109.60264 * 290.81926 * 10 8 6 34 34 H 1.08994 * 109.60499 * 51.30484 * 10 8 6 35 35 H 1.08997 * 109.67764 * 172.73373 * 11 10 8 36 36 H 1.09001 * 109.67566 * 52.19424 * 11 10 8 37 37 H 1.09000 * 109.39826 * 288.77279 * 12 11 10 38 38 H 1.09001 * 109.33295 * 168.98697 * 12 11 10 39 39 H 0.97001 * 117.94212 * 182.19671 * 15 13 12 40 40 H 1.08998 * 109.88222 * 239.52595 * 16 5 4 41 41 H 1.09004 * 109.88300 * 118.35961 * 16 5 4 42 42 H 0.96999 * 120.00288 * 91.15371 * 19 17 16 43 43 H 0.96997 * 120.00308 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8066 -1.2003 5 7 3.4271 -1.2431 -0.7734 6 6 4.4476 -1.5617 -1.5942 7 8 4.3008 -1.5000 -2.7965 8 6 5.7711 -1.9946 -1.0179 9 1 6.0041 -1.3794 -0.1488 10 6 5.6794 -3.4586 -0.5858 11 6 7.0835 -3.9492 -0.2127 12 6 7.9353 -3.9903 -1.4840 13 6 7.8010 -2.6945 -2.2311 14 8 8.6361 -2.4257 -3.0685 15 7 6.8130 -1.8235 -2.0226 16 6 3.4675 -1.2742 0.6959 17 6 2.0862 -0.8080 1.2022 18 1 1.4468 -1.6633 1.4209 19 7 2.2285 0.0461 2.3839 20 6 2.2523 -0.5129 3.6339 21 1 2.1658 -1.5833 3.7483 22 6 2.3877 0.2963 4.7535 23 7 2.4926 1.6008 4.6140 24 14 2.4195 -0.4662 6.4586 25 1 2.2834 -1.9405 6.3441 26 1 3.7057 -0.1374 7.1239 27 1 1.2939 0.0733 7.2631 28 1 -0.3633 0.4520 0.9229 29 1 -0.3633 0.5732 -0.8529 30 1 -0.3634 -1.0253 -0.0699 31 1 2.1559 -0.1720 -2.0837 32 1 1.4524 -1.6704 -1.4044 33 1 5.0205 -3.5443 0.2783 34 1 5.2887 -4.0587 -1.4075 35 1 7.0206 -4.9479 0.2193 36 1 7.5321 -3.2649 0.5075 37 1 7.5994 -4.8105 -2.1184 38 1 8.9797 -4.1459 -1.2136 39 1 6.7863 -1.0259 -2.5740 40 1 4.2426 -0.5998 1.0598 41 1 3.6650 -2.2895 1.0399 42 1 2.3059 1.0075 2.2811 43 1 2.5875 2.1662 5.3964 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082580693.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:08:37 Heat of formation + Delta-G solvation = -66.366688 kcal Electronic energy + Delta-G solvation = -24500.106399 eV Core-core repulsion = 20965.909262 eV Total energy + Delta-G solvation = -3534.197137 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.89592 -39.56748 -37.79548 -36.31816 -34.22339 -33.18348 -32.69920 -30.86661 -30.08387 -27.67915 -26.71681 -24.94271 -24.01496 -23.01901 -21.68245 -20.10778 -19.58415 -19.32867 -17.39054 -17.24161 -17.19171 -16.50479 -15.77084 -15.53097 -14.98579 -14.77551 -14.31647 -14.27063 -13.97701 -13.67732 -13.62020 -13.23329 -13.22840 -12.78309 -12.55392 -12.28029 -12.14340 -11.78500 -11.66317 -11.33362 -11.28459 -11.21367 -11.10630 -10.85723 -10.70882 -10.33548 -10.23490 -10.05948 -9.86274 -9.77322 -9.20881 -9.07307 -8.52019 -7.20593 -5.95004 -3.26646 2.47132 2.47761 2.85938 3.29719 3.32083 3.38109 3.40583 4.24763 4.33103 4.41311 4.44774 4.51899 4.69337 4.90710 4.99190 5.01712 5.10676 5.15733 5.39959 5.42738 5.47432 5.51434 5.56281 5.57516 5.67866 5.71803 5.79281 5.86348 5.89255 6.08716 6.13070 6.23354 6.34913 6.39318 6.51363 6.60616 6.74064 7.17280 7.52963 7.58024 8.03618 8.13555 8.22093 9.34407 9.87263 10.21825 11.26721 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.015254 B = 0.004209 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.143827 B = 6650.487973 C = 7941.855430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.114 4.114 3 H 0.084 0.916 4 C 0.113 3.887 5 N -0.606 5.606 6 C 0.516 3.484 7 O -0.543 6.543 8 C 0.128 3.872 9 H 0.102 0.898 10 C -0.128 4.128 11 C -0.122 4.122 12 C -0.136 4.136 13 C 0.524 3.476 14 O -0.560 6.560 15 N -0.698 5.698 16 C 0.066 3.934 17 C 0.178 3.822 18 H 0.069 0.931 19 N -0.711 5.711 20 C -0.251 4.251 21 H 0.073 0.927 22 C -0.006 4.006 23 N -0.927 5.927 24 Si 0.907 3.093 25 H -0.279 1.279 26 H -0.290 1.290 27 H -0.290 1.290 28 H 0.069 0.931 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.067 0.933 33 H 0.096 0.904 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.404 0.596 40 H 0.076 0.924 41 H 0.063 0.937 42 H 0.387 0.613 43 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.989 -9.391 -8.569 13.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.134 4.134 3 H 0.102 0.898 4 C -0.009 4.009 5 N -0.339 5.339 6 C 0.302 3.698 7 O -0.421 6.421 8 C 0.019 3.981 9 H 0.120 0.880 10 C -0.166 4.166 11 C -0.160 4.160 12 C -0.176 4.176 13 C 0.312 3.688 14 O -0.438 6.438 15 N -0.351 5.351 16 C -0.060 4.060 17 C 0.065 3.935 18 H 0.087 0.913 19 N -0.351 5.351 20 C -0.382 4.382 21 H 0.091 0.909 22 C -0.203 4.203 23 N -0.575 5.575 24 Si 0.737 3.263 25 H -0.204 1.204 26 H -0.217 1.217 27 H -0.217 1.217 28 H 0.088 0.912 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.114 0.886 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.241 0.759 40 H 0.094 0.906 41 H 0.081 0.919 42 H 0.222 0.778 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.405 -9.534 -9.349 13.780 hybrid contribution -0.031 0.342 0.893 0.957 sum 3.374 -9.192 -8.456 12.937 Atomic orbital electron populations 1.21608 0.93742 1.01586 1.02193 1.22644 0.96451 0.99820 0.94491 0.89771 1.22307 0.82453 0.98235 0.97926 1.48518 1.12022 1.65125 1.08256 1.20356 0.85109 0.77878 0.86442 1.90716 1.82927 1.53995 1.14473 1.20862 0.85992 0.99493 0.91763 0.87998 1.21867 0.98947 0.92593 1.03205 1.21674 0.94122 1.03147 0.97014 1.21687 1.03181 0.95338 0.97405 1.20155 0.80263 0.85542 0.82871 1.90757 1.40825 1.76681 1.35563 1.45240 1.26197 1.25163 1.38456 1.23513 1.03867 1.01461 0.77134 1.21236 0.91393 0.93954 0.86916 0.91336 1.42373 1.86723 1.05702 1.00255 1.19270 1.43423 0.92204 0.83298 0.90865 1.24765 1.02131 0.95362 0.98015 1.69663 1.56036 1.02634 1.29122 0.86141 0.77313 0.78257 0.84554 1.20426 1.21747 1.21747 0.91243 0.93143 0.92813 0.90881 0.91450 0.88570 0.90307 0.89735 0.90441 0.88109 0.87935 0.75936 0.90557 0.91864 0.77837 0.93301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.71 9.31 37.16 0.35 -1.36 16 2 C -0.11 -1.62 3.26 -88.47 -0.29 -1.90 16 3 H 0.08 1.28 8.01 -51.93 -0.42 0.87 16 4 C 0.11 1.51 6.37 -2.53 -0.02 1.50 16 5 N -0.61 -8.37 3.33 -170.52 -0.57 -8.94 16 6 C 0.52 7.34 7.01 -10.98 -0.08 7.26 16 7 O -0.54 -9.45 16.64 5.55 0.09 -9.36 16 8 C 0.13 1.47 2.88 -69.53 -0.20 1.27 16 9 H 0.10 1.10 7.47 -51.93 -0.39 0.72 16 10 C -0.13 -1.17 5.24 -26.60 -0.14 -1.31 16 11 C -0.12 -0.92 6.03 -26.51 -0.16 -1.08 16 12 C -0.14 -1.22 6.03 -28.10 -0.17 -1.39 16 13 C 0.52 6.87 7.71 -11.87 -0.09 6.77 16 14 O -0.56 -9.52 17.78 5.56 0.10 -9.42 16 15 N -0.70 -8.85 4.79 -55.99 -0.27 -9.12 16 16 C 0.07 0.95 5.95 -3.07 -0.02 0.94 16 17 C 0.18 2.93 3.06 -66.10 -0.20 2.72 16 18 H 0.07 1.14 8.00 -51.93 -0.42 0.73 16 19 N -0.71 -15.34 5.17 -51.65 -0.27 -15.61 16 20 C -0.25 -6.15 9.97 -15.06 -0.15 -6.30 16 21 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 22 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 23 N -0.93 -25.84 13.06 55.49 0.72 -25.12 16 24 Si 0.91 20.58 29.55 -169.99 -5.02 15.56 16 25 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 26 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 27 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.63 8.08 -51.93 -0.42 0.21 16 31 H 0.07 1.00 8.04 -51.93 -0.42 0.58 16 32 H 0.07 0.83 7.99 -51.92 -0.41 0.42 16 33 H 0.10 0.82 6.59 -51.93 -0.34 0.47 16 34 H 0.08 0.76 8.10 -51.93 -0.42 0.33 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.58 8.13 -51.93 -0.42 0.16 16 37 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.40 5.45 8.45 -40.82 -0.34 5.11 16 40 H 0.08 1.21 7.74 -51.93 -0.40 0.80 16 41 H 0.06 0.82 6.66 -51.93 -0.35 0.48 16 42 H 0.39 9.12 7.75 -40.82 -0.32 8.80 16 43 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 347.80 15.07 5.24 5.24 Total: -1.00 -31.05 347.80 -7.96 -39.01 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -6.72 Total: 10.89 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: -1.26 Total: 6.87 kcal Atomic # 7 Polarization: -58.40 SS G_CDS: -0.38 Total: -58.78 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: 0.19 Total: -18.78 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.05 -7.96 -39.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082580693.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.358 kcal (2) G-P(sol) polarization free energy of solvation -31.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds