Wall clock time and date at job start Tue Mar 31 2020 04:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.92052 * 2 1 4 4 C 1.54909 * 111.00221 * 236.09926 * 2 1 3 5 5 N 1.47426 * 104.83381 * 204.91626 * 4 2 1 6 6 C 1.34778 * 125.64843 * 204.08968 * 5 4 2 7 7 O 1.21284 * 120.00097 * 0.02562 * 6 5 4 8 8 C 1.50702 * 119.99810 * 180.02562 * 6 5 4 9 9 H 1.09005 * 109.29904 * 319.58842 * 8 6 5 10 10 C 1.52918 * 109.29730 * 78.97048 * 8 6 5 11 11 C 1.53343 * 108.67530 * 171.06683 * 10 8 6 12 12 C 1.53077 * 108.42233 * 292.46852 * 11 10 8 13 13 C 1.50177 * 109.89084 * 48.89667 * 12 11 10 14 14 O 1.21278 * 118.24245 * 162.39577 * 13 12 11 15 15 N 1.33353 * 123.50803 * 342.42076 * 13 12 11 16 16 C 1.47018 * 108.70104 * 24.12870 * 5 4 2 17 17 C 1.54322 * 107.27336 * 358.94171 * 16 5 4 18 18 H 1.09002 * 110.71963 * 96.17078 * 17 16 5 19 19 N 1.46502 * 110.72235 * 219.26811 * 17 16 5 20 20 C 1.36943 * 119.99977 * 271.15808 * 19 17 16 21 21 H 1.07994 * 119.99567 * 359.97438 * 20 19 17 22 22 C 1.38808 * 119.99866 * 179.97438 * 20 19 17 23 23 N 1.31619 * 120.00443 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99960 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.46924 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47349 * 119.99966 * 24 22 20 27 27 H 1.48501 * 109.47012 * 240.00228 * 24 22 20 28 28 H 1.08998 * 109.46949 * 296.09467 * 1 2 3 29 29 H 1.08994 * 109.47021 * 56.09642 * 1 2 3 30 30 H 1.09005 * 109.47193 * 176.10096 * 1 2 3 31 31 H 1.08998 * 110.36917 * 86.07337 * 4 2 1 32 32 H 1.09009 * 110.46209 * 323.79974 * 4 2 1 33 33 H 1.09007 * 109.60264 * 290.81926 * 10 8 6 34 34 H 1.08994 * 109.60499 * 51.30484 * 10 8 6 35 35 H 1.08997 * 109.67764 * 172.73373 * 11 10 8 36 36 H 1.09001 * 109.67566 * 52.19424 * 11 10 8 37 37 H 1.09000 * 109.39826 * 288.77279 * 12 11 10 38 38 H 1.09001 * 109.33295 * 168.98697 * 12 11 10 39 39 H 0.97001 * 117.94212 * 182.19671 * 15 13 12 40 40 H 1.08998 * 109.88222 * 239.52595 * 16 5 4 41 41 H 1.09004 * 109.88300 * 118.35961 * 16 5 4 42 42 H 0.96999 * 120.00288 * 91.15371 * 19 17 16 43 43 H 0.96997 * 120.00308 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9192 1.0181 0.0000 4 6 2.0852 -0.8066 -1.2003 5 7 3.4271 -1.2431 -0.7734 6 6 4.4476 -1.5617 -1.5942 7 8 4.3008 -1.5000 -2.7965 8 6 5.7711 -1.9946 -1.0179 9 1 6.0041 -1.3794 -0.1488 10 6 5.6794 -3.4586 -0.5858 11 6 7.0835 -3.9492 -0.2127 12 6 7.9353 -3.9903 -1.4840 13 6 7.8010 -2.6945 -2.2311 14 8 8.6361 -2.4257 -3.0685 15 7 6.8130 -1.8235 -2.0226 16 6 3.4675 -1.2742 0.6959 17 6 2.0862 -0.8080 1.2022 18 1 1.4468 -1.6633 1.4209 19 7 2.2285 0.0461 2.3839 20 6 2.2523 -0.5129 3.6339 21 1 2.1658 -1.5833 3.7483 22 6 2.3877 0.2963 4.7535 23 7 2.4926 1.6008 4.6140 24 14 2.4195 -0.4662 6.4586 25 1 2.2834 -1.9405 6.3441 26 1 3.7057 -0.1374 7.1239 27 1 1.2939 0.0733 7.2631 28 1 -0.3633 0.4520 0.9229 29 1 -0.3633 0.5732 -0.8529 30 1 -0.3634 -1.0253 -0.0699 31 1 2.1559 -0.1720 -2.0837 32 1 1.4524 -1.6704 -1.4044 33 1 5.0205 -3.5443 0.2783 34 1 5.2887 -4.0587 -1.4075 35 1 7.0206 -4.9479 0.2193 36 1 7.5321 -3.2649 0.5075 37 1 7.5994 -4.8105 -2.1184 38 1 8.9797 -4.1459 -1.2136 39 1 6.7863 -1.0259 -2.5740 40 1 4.2426 -0.5998 1.0598 41 1 3.6650 -2.2895 1.0399 42 1 2.3059 1.0075 2.2811 43 1 2.5875 2.1662 5.3964 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082580693.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:08:36 Heat of formation + Delta-G solvation = -88.405695 kcal Electronic energy + Delta-G solvation = -24501.062082 eV Core-core repulsion = 20965.909262 eV Total energy + Delta-G solvation = -3535.152820 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.93387 -40.69722 -39.04161 -37.33297 -35.85159 -34.03815 -33.98007 -32.50017 -31.02984 -29.12146 -27.72447 -26.05569 -25.54939 -23.84954 -23.00233 -21.38827 -20.69918 -20.16097 -19.05127 -18.42623 -18.29717 -17.59410 -16.98683 -16.56363 -16.38669 -15.88354 -15.67369 -15.30481 -15.17174 -14.82270 -14.66500 -14.52976 -14.32961 -14.09296 -13.71021 -13.44335 -13.05452 -12.97724 -12.84571 -12.83558 -12.64614 -12.19522 -12.08515 -12.02279 -11.98626 -11.91450 -11.63420 -11.43717 -11.30560 -10.92920 -10.80577 -10.23195 -9.69864 -9.01671 -7.90153 -5.19577 1.35896 1.45476 1.53374 1.55464 1.63634 1.80584 2.28821 2.60802 3.21097 3.42583 3.52482 3.60090 3.71224 3.81284 3.84484 3.91045 4.00985 4.18485 4.25476 4.39990 4.47444 4.50963 4.63517 4.69174 4.72664 4.76648 4.87627 4.90819 5.00884 5.05307 5.12639 5.17415 5.20297 5.26085 5.35645 5.50671 5.56581 5.61561 6.19692 6.30245 6.42163 6.93345 7.07767 7.38745 8.10618 8.33420 9.33038 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.015254 B = 0.004209 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.143827 B = 6650.487973 C = 7941.855430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.106 4.106 3 H 0.068 0.932 4 C 0.116 3.884 5 N -0.603 5.603 6 C 0.516 3.484 7 O -0.578 6.578 8 C 0.130 3.870 9 H 0.112 0.888 10 C -0.126 4.126 11 C -0.114 4.114 12 C -0.131 4.131 13 C 0.518 3.482 14 O -0.607 6.607 15 N -0.700 5.700 16 C 0.079 3.921 17 C 0.171 3.829 18 H 0.075 0.925 19 N -0.722 5.722 20 C -0.234 4.234 21 H 0.086 0.914 22 C -0.070 4.070 23 N -0.969 5.969 24 Si 0.964 3.036 25 H -0.260 1.260 26 H -0.299 1.299 27 H -0.302 1.302 28 H 0.046 0.954 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.109 0.891 34 H 0.076 0.924 35 H 0.113 0.887 36 H 0.080 0.920 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.395 0.605 40 H 0.063 0.937 41 H 0.087 0.913 42 H 0.374 0.626 43 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.803 -11.996 -8.275 14.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.126 4.126 3 H 0.087 0.913 4 C -0.006 4.006 5 N -0.336 5.336 6 C 0.304 3.696 7 O -0.458 6.458 8 C 0.022 3.978 9 H 0.129 0.871 10 C -0.164 4.164 11 C -0.151 4.151 12 C -0.170 4.170 13 C 0.307 3.693 14 O -0.490 6.490 15 N -0.350 5.350 16 C -0.046 4.046 17 C 0.060 3.940 18 H 0.093 0.907 19 N -0.361 5.361 20 C -0.366 4.366 21 H 0.104 0.896 22 C -0.262 4.262 23 N -0.620 5.620 24 Si 0.795 3.205 25 H -0.184 1.184 26 H -0.226 1.226 27 H -0.229 1.229 28 H 0.065 0.935 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.103 0.897 33 H 0.128 0.872 34 H 0.095 0.905 35 H 0.132 0.868 36 H 0.099 0.901 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.230 0.770 40 H 0.081 0.919 41 H 0.105 0.895 42 H 0.206 0.794 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 3.191 -12.202 -9.062 15.530 hybrid contribution -0.029 1.159 0.682 1.345 sum 3.161 -11.043 -8.380 14.218 Atomic orbital electron populations 1.21564 0.92504 1.02713 1.01822 1.22544 0.97434 0.98798 0.93806 0.91309 1.22327 0.82459 0.98689 0.97165 1.48505 1.12292 1.64825 1.07937 1.20798 0.85804 0.77084 0.85942 1.90705 1.83553 1.55560 1.15958 1.21007 0.84016 1.01575 0.91218 0.87082 1.21935 1.00454 0.90439 1.03537 1.21685 0.92436 1.04797 0.96183 1.21754 1.04505 0.92932 0.97830 1.20997 0.79331 0.86536 0.82423 1.90730 1.42552 1.77858 1.37817 1.45377 1.26413 1.24840 1.38387 1.23194 1.01778 1.02359 0.77312 1.21444 0.92714 0.93773 0.86050 0.90665 1.42507 1.86905 1.05605 1.01069 1.19681 1.40031 0.92653 0.84236 0.89624 1.25457 1.03743 0.95732 1.01274 1.69810 1.58942 1.03941 1.29258 0.85207 0.76200 0.78439 0.80705 1.18419 1.22631 1.22931 0.93467 0.91349 0.91236 0.91181 0.89683 0.87249 0.90513 0.86837 0.90148 0.86666 0.86666 0.76988 0.91872 0.89492 0.79377 0.94242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 9.31 71.98 0.67 -2.40 16 2 C -0.11 -2.86 3.26 -9.40 -0.03 -2.89 16 3 H 0.07 2.09 8.01 -2.39 -0.02 2.07 16 4 C 0.12 2.87 6.37 86.85 0.55 3.42 16 5 N -0.60 -15.50 3.33 -811.78 -2.70 -18.20 16 6 C 0.52 13.94 7.01 87.66 0.61 14.55 16 7 O -0.58 -19.69 16.64 -3.04 -0.05 -19.74 16 8 C 0.13 2.76 2.88 44.36 0.13 2.89 16 9 H 0.11 2.19 7.47 -2.38 -0.02 2.17 16 10 C -0.13 -1.90 5.24 30.68 0.16 -1.74 16 11 C -0.11 -1.29 6.03 30.74 0.19 -1.10 16 12 C -0.13 -2.00 6.03 29.71 0.18 -1.82 16 13 C 0.52 13.13 7.71 87.71 0.68 13.81 16 14 O -0.61 -20.84 17.78 -3.02 -0.05 -20.90 16 15 N -0.70 -17.33 4.79 -450.24 -2.16 -19.49 16 16 C 0.08 2.10 5.95 86.73 0.52 2.61 16 17 C 0.17 5.32 3.06 46.18 0.14 5.46 16 18 H 0.08 2.29 8.00 -2.39 -0.02 2.27 16 19 N -0.72 -30.71 5.17 -317.33 -1.64 -32.35 16 20 C -0.23 -11.18 9.97 84.03 0.84 -10.34 16 21 H 0.09 3.81 7.83 -2.91 -0.02 3.79 16 22 C -0.07 -3.60 5.50 84.86 0.47 -3.14 16 23 N -0.97 -54.96 13.06 21.65 0.28 -54.68 16 24 Si 0.96 42.04 29.55 68.60 2.03 44.06 16 25 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 26 H -0.30 -13.28 7.11 99.48 0.71 -12.58 16 27 H -0.30 -13.55 7.11 99.48 0.71 -12.84 16 28 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.07 1.44 8.08 -2.38 -0.02 1.42 16 31 H 0.07 1.81 8.04 -2.39 -0.02 1.79 16 32 H 0.09 1.85 7.99 -2.38 -0.02 1.83 16 33 H 0.11 1.39 6.59 -2.38 -0.02 1.38 16 34 H 0.08 1.23 8.10 -2.39 -0.02 1.21 16 35 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.08 0.92 8.13 -2.39 -0.02 0.90 16 37 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 39 H 0.40 10.85 8.45 -92.71 -0.78 10.07 16 40 H 0.06 1.89 7.74 -2.39 -0.02 1.87 16 41 H 0.09 1.94 6.66 -2.38 -0.02 1.92 16 42 H 0.37 17.83 7.75 -92.71 -0.72 17.11 16 43 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16 Total: -1.00 -68.10 347.80 0.34 -67.76 By element: Atomic # 1 Polarization: 34.68 SS G_CDS: -0.47 Total: 34.21 kcal Atomic # 6 Polarization: 14.22 SS G_CDS: 5.10 Total: 19.31 kcal Atomic # 7 Polarization: -118.50 SS G_CDS: -6.21 Total: -124.71 kcal Atomic # 8 Polarization: -40.54 SS G_CDS: -0.10 Total: -40.64 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.06 kcal Total: -68.10 0.34 -67.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082580693.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.642 kcal (2) G-P(sol) polarization free energy of solvation -68.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds