Wall clock time and date at job start Tue Mar 31 2020 04:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 110.64052 * 2 1 4 4 C 1.54334 * 111.00198 * 236.91863 * 2 1 3 5 5 N 1.47024 * 107.26791 * 219.60359 * 4 2 1 6 6 C 1.34773 * 125.64789 * 178.85379 * 5 4 2 7 7 O 1.21288 * 120.00122 * 359.71278 * 6 5 4 8 8 C 1.50699 * 119.99799 * 179.71800 * 6 5 4 9 9 H 1.09000 * 110.53851 * 57.38682 * 8 6 5 10 10 C 1.54627 * 110.48463 * 179.97438 * 8 6 5 11 11 C 1.54485 * 101.76594 * 143.47534 * 10 8 6 12 12 N 1.46769 * 105.47030 * 334.58477 * 11 10 8 13 13 C 1.46502 * 124.34688 * 197.03928 * 12 11 10 14 14 C 1.34417 * 111.30165 * 17.01252 * 12 11 10 15 15 O 1.21277 * 124.94467 * 179.55292 * 14 12 11 16 16 C 1.47421 * 108.69998 * 358.58516 * 5 4 2 17 17 C 1.54913 * 104.83352 * 24.35824 * 16 5 4 18 18 H 1.09000 * 111.00299 * 81.06107 * 17 16 5 19 19 N 1.46502 * 111.00273 * 204.91375 * 17 16 5 20 20 C 1.36937 * 119.99858 * 273.54073 * 19 17 16 21 21 H 1.07997 * 120.00064 * 0.02562 * 20 19 17 22 22 C 1.38811 * 119.99994 * 179.97438 * 20 19 17 23 23 N 1.31614 * 120.00186 * 180.02562 * 22 20 19 24 24 Si 1.86805 * 119.99789 * 0.02562 * 22 20 19 25 25 H 1.48495 * 109.47250 * 90.00045 * 24 22 20 26 26 H 1.48501 * 109.46980 * 209.99920 * 24 22 20 27 27 H 1.48497 * 109.47162 * 329.99510 * 24 22 20 28 28 H 1.09004 * 109.47005 * 296.86030 * 1 2 3 29 29 H 1.09002 * 109.47251 * 56.85834 * 1 2 3 30 30 H 1.08999 * 109.47529 * 176.85461 * 1 2 3 31 31 H 1.09005 * 109.98869 * 100.12672 * 4 2 1 32 32 H 1.09006 * 109.77991 * 338.96438 * 4 2 1 33 33 H 1.09000 * 110.97423 * 261.59507 * 10 8 6 34 34 H 1.08997 * 110.97122 * 25.35881 * 10 8 6 35 35 H 1.08998 * 110.24371 * 93.58343 * 11 10 8 36 36 H 1.08997 * 110.24407 * 215.58801 * 11 10 8 37 37 H 1.08999 * 109.46755 * 180.02562 * 13 12 11 38 38 H 1.09002 * 109.46411 * 299.99577 * 13 12 11 39 39 H 1.08990 * 109.47439 * 59.99834 * 13 12 11 40 40 H 1.08997 * 110.36458 * 143.19056 * 16 5 4 41 41 H 1.08994 * 110.37085 * 265.40553 * 16 5 4 42 42 H 0.97000 * 119.99611 * 93.54598 * 19 17 16 43 43 H 0.97000 * 120.00112 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0831 -0.7864 -1.2073 5 7 3.2494 -1.5471 -0.7353 6 6 4.0004 -2.3786 -1.4843 7 8 3.7296 -2.5527 -2.6537 8 6 5.1765 -3.0920 -0.8689 9 1 4.8575 -3.6881 -0.0139 10 6 5.8778 -3.9846 -1.9188 11 6 7.3627 -3.8314 -1.5212 12 7 7.4533 -2.5357 -0.8377 13 6 8.7046 -1.8108 -0.6029 14 6 6.2407 -2.0994 -0.4556 15 8 6.0304 -1.0614 0.1353 16 6 3.4652 -1.2447 0.6914 17 6 2.0789 -0.7934 1.2152 18 1 1.4468 -1.6529 1.4384 19 7 2.2175 0.0727 2.3886 20 6 2.3127 -0.4781 3.6387 21 1 2.2860 -1.5509 3.7595 22 6 2.4445 0.3426 4.7505 23 7 2.5365 -0.1868 5.9519 24 14 2.4913 2.1983 4.5413 25 1 1.1105 2.7397 4.6145 26 1 3.3158 2.7975 5.6213 27 1 3.0850 2.5329 3.2219 28 1 -0.3633 0.4643 0.9168 29 1 -0.3634 0.5618 -0.8605 30 1 -0.3634 -1.0261 -0.0564 31 1 2.3848 -0.0961 -1.9951 32 1 1.3216 -1.4702 -1.5823 33 1 5.5546 -5.0216 -1.8277 34 1 5.7036 -3.6106 -2.9277 35 1 7.6574 -4.6352 -0.8464 36 1 7.9934 -3.8339 -2.4101 37 1 8.4919 -0.8799 -0.0772 38 1 9.3720 -2.4248 0.0018 39 1 9.1806 -1.5887 -1.5578 40 1 3.7991 -2.1364 1.2218 41 1 4.1944 -0.4424 0.8031 42 1 2.2417 1.0363 2.2799 43 1 2.6283 0.3867 6.7289 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082692707.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:03 Heat of formation + Delta-G solvation = -41.468261 kcal Electronic energy + Delta-G solvation = -24966.965974 eV Core-core repulsion = 21433.848514 eV Total energy + Delta-G solvation = -3533.117460 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.03303 -39.27759 -37.65758 -36.42649 -34.13751 -33.10889 -32.32497 -30.98230 -28.47790 -27.78620 -26.96993 -25.99000 -23.76081 -22.46437 -21.29776 -20.25345 -20.03964 -18.68227 -17.53520 -17.33084 -17.03808 -16.42746 -15.95222 -15.38300 -14.93413 -14.46537 -14.21530 -13.93810 -13.47285 -13.41154 -13.20207 -13.15961 -12.93481 -12.70086 -12.68599 -12.55576 -12.29942 -12.04883 -11.88388 -11.73159 -11.34281 -11.24571 -11.06587 -10.73839 -10.59442 -10.33163 -9.98322 -9.89984 -9.67188 -9.60052 -8.98397 -8.89829 -8.28381 -7.31417 -5.79511 -3.16221 2.32567 2.64522 2.93302 3.22696 3.38080 3.41718 3.45883 4.10887 4.20149 4.54765 4.58115 4.75370 4.80305 5.02722 5.05326 5.09124 5.13703 5.18429 5.25714 5.31873 5.48179 5.55734 5.58546 5.61363 5.74785 5.78928 5.84961 5.87366 5.90882 6.16947 6.22128 6.29304 6.36062 6.47937 6.54580 6.59091 6.84362 6.98648 7.74930 7.94864 8.07503 8.24759 8.39384 9.16466 9.89010 10.07756 11.38426 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.015249 B = 0.005080 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.763993 B = 5510.827374 C = 6717.027229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.117 4.117 3 H 0.082 0.918 4 C 0.118 3.882 5 N -0.600 5.600 6 C 0.544 3.456 7 O -0.551 6.551 8 C -0.145 4.145 9 H 0.134 0.866 10 C -0.116 4.116 11 C 0.103 3.897 12 N -0.625 5.625 13 C 0.095 3.905 14 C 0.526 3.474 15 O -0.500 6.500 16 C 0.077 3.923 17 C 0.179 3.821 18 H 0.071 0.929 19 N -0.734 5.734 20 C -0.247 4.247 21 H 0.091 0.909 22 C 0.009 3.991 23 N -0.931 5.931 24 Si 0.882 3.118 25 H -0.283 1.283 26 H -0.291 1.291 27 H -0.276 1.276 28 H 0.067 0.933 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.095 0.905 42 H 0.364 0.636 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.839 -6.761 -16.809 19.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.137 4.137 3 H 0.100 0.900 4 C -0.004 4.004 5 N -0.331 5.331 6 C 0.331 3.669 7 O -0.431 6.431 8 C -0.170 4.170 9 H 0.152 0.848 10 C -0.154 4.154 11 C -0.021 4.021 12 N -0.361 5.361 13 C -0.047 4.047 14 C 0.311 3.689 15 O -0.374 6.374 16 C -0.048 4.048 17 C 0.068 3.932 18 H 0.089 0.911 19 N -0.376 5.376 20 C -0.377 4.377 21 H 0.109 0.891 22 C -0.187 4.187 23 N -0.579 5.579 24 Si 0.712 3.288 25 H -0.210 1.210 26 H -0.217 1.217 27 H -0.202 1.202 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.114 0.886 34 H 0.118 0.882 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.113 0.887 42 H 0.197 0.803 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.701 -6.427 -16.880 19.635 hybrid contribution 0.332 1.220 0.151 1.273 sum 8.033 -5.207 -16.729 19.274 Atomic orbital electron populations 1.21680 0.93735 1.01868 1.01961 1.22508 0.96509 0.99803 0.94856 0.90007 1.21963 0.87399 0.94383 0.96699 1.48405 1.29065 1.42743 1.12924 1.19308 0.82826 0.79166 0.85639 1.90660 1.71367 1.64961 1.16066 1.22082 0.94584 0.98264 1.02049 0.84809 1.22598 0.92331 1.00580 0.99903 1.22141 0.97686 0.84970 0.97254 1.48089 1.07110 1.22030 1.58869 1.21563 0.84256 0.97521 1.01327 1.20356 0.83811 0.86155 0.78546 1.90799 1.82739 1.23993 1.39887 1.23652 1.01679 1.02058 0.77449 1.21377 0.92524 0.93526 0.85789 0.91114 1.42616 1.88655 1.03888 1.02393 1.19042 1.43019 0.93926 0.81686 0.89108 1.24644 1.01576 0.97353 0.95101 1.69694 1.56576 1.34166 0.97424 0.86582 0.77732 0.87275 0.77190 1.21000 1.21714 1.20166 0.91438 0.93100 0.92564 0.91956 0.91373 0.88601 0.88161 0.90778 0.90096 0.89687 0.91961 0.92150 0.91656 0.88726 0.80254 0.93003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 9.17 37.16 0.34 -1.51 16 2 C -0.12 -1.84 3.15 -88.78 -0.28 -2.12 16 3 H 0.08 1.31 8.00 -51.93 -0.42 0.89 16 4 C 0.12 1.81 6.48 -3.06 -0.02 1.79 16 5 N -0.60 -10.05 3.29 -170.51 -0.56 -10.62 16 6 C 0.54 8.79 7.18 -10.99 -0.08 8.72 16 7 O -0.55 -9.86 15.82 5.55 0.09 -9.77 16 8 C -0.15 -1.89 2.61 -91.78 -0.24 -2.13 16 9 H 0.13 1.57 7.77 -51.93 -0.40 1.16 16 10 C -0.12 -1.08 6.48 -25.10 -0.16 -1.24 16 11 C 0.10 0.80 7.35 -3.12 -0.02 0.77 16 12 N -0.63 -7.02 3.33 -180.29 -0.60 -7.62 16 13 C 0.10 0.87 11.14 59.85 0.67 1.54 16 14 C 0.53 7.77 7.35 -10.86 -0.08 7.69 16 15 O -0.50 -9.37 13.58 5.56 0.08 -9.29 16 16 C 0.08 1.42 4.91 -2.53 -0.01 1.41 16 17 C 0.18 3.42 3.13 -65.78 -0.21 3.21 16 18 H 0.07 1.38 8.04 -51.93 -0.42 0.96 16 19 N -0.73 -16.99 5.08 -51.35 -0.26 -17.25 16 20 C -0.25 -6.80 10.47 -15.06 -0.16 -6.96 16 21 H 0.09 2.67 8.06 -52.49 -0.42 2.24 16 22 C 0.01 0.27 5.50 -17.43 -0.10 0.18 16 23 N -0.93 -28.90 13.97 55.49 0.78 -28.13 16 24 Si 0.88 22.00 27.74 -169.99 -4.71 17.29 16 25 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 27 H -0.28 -6.55 6.52 56.52 0.37 -6.18 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.07 0.98 7.78 -51.93 -0.40 0.58 16 33 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.10 1.07 7.00 -51.93 -0.36 0.71 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.93 7.53 -51.93 -0.39 0.54 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.06 1.22 7.42 -51.93 -0.39 0.83 16 41 H 0.09 2.00 6.18 -51.93 -0.32 1.68 16 42 H 0.36 8.37 5.57 -40.82 -0.23 8.14 16 43 H 0.26 7.70 8.31 -40.82 -0.34 7.37 16 LS Contribution 343.33 15.07 5.17 5.17 Total: -1.00 -34.46 343.33 -7.09 -41.55 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -6.72 Total: 7.32 kcal Atomic # 6 Polarization: 11.70 SS G_CDS: -0.35 Total: 11.35 kcal Atomic # 7 Polarization: -62.97 SS G_CDS: -0.65 Total: -63.62 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: 0.16 Total: -19.07 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.71 Total: 17.29 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.46 -7.09 -41.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082692707.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.086 kcal (2) G-P(sol) polarization free energy of solvation -34.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds