Wall clock time and date at job start Tue Mar 31 2020 04:08:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 110.63884 * 2 1 4 4 C 1.54320 * 110.72194 * 236.85979 * 2 1 3 5 5 N 1.47020 * 107.27107 * 219.44468 * 4 2 1 6 6 C 1.34777 * 125.64945 * 178.97782 * 5 4 2 7 7 O 1.21281 * 119.99885 * 359.97438 * 6 5 4 8 8 C 1.50701 * 120.00336 * 179.97438 * 6 5 4 9 9 C 1.53001 * 109.47369 * 179.97438 * 8 6 5 10 10 H 1.08998 * 110.20910 * 53.07074 * 9 8 6 11 11 C 1.54481 * 110.24364 * 175.00073 * 9 8 6 12 12 C 1.54624 * 101.76319 * 93.58492 * 11 9 8 13 13 C 1.51282 * 104.19534 * 24.79773 * 12 11 9 14 14 O 1.21280 * 124.93866 * 163.71369 * 13 12 11 15 15 N 1.34410 * 110.11570 * 343.74301 * 13 12 11 16 16 C 1.47425 * 108.70099 * 358.93766 * 5 4 2 17 17 C 1.54907 * 104.83142 * 24.13000 * 16 5 4 18 18 H 1.09000 * 111.00135 * 81.06852 * 17 16 5 19 19 N 1.46499 * 111.00277 * 204.91089 * 17 16 5 20 20 C 1.36936 * 120.00696 * 267.20195 * 19 17 16 21 21 H 1.08006 * 119.99720 * 359.97438 * 20 19 17 22 22 C 1.38806 * 120.00309 * 179.97438 * 20 19 17 23 23 N 1.31624 * 120.00217 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 120.00080 * 179.97438 * 22 20 19 25 25 H 1.48492 * 109.47106 * 90.00072 * 24 22 20 26 26 H 1.48495 * 109.47011 * 210.00507 * 24 22 20 27 27 H 1.48503 * 109.46943 * 330.00048 * 24 22 20 28 28 H 1.09001 * 109.47002 * 181.68599 * 1 2 3 29 29 H 1.08993 * 109.46955 * 301.69036 * 1 2 3 30 30 H 1.09000 * 109.47050 * 61.68865 * 1 2 3 31 31 H 1.09009 * 109.88244 * 338.86071 * 4 2 1 32 32 H 1.08999 * 109.88547 * 99.86758 * 4 2 1 33 33 H 1.08994 * 109.46907 * 300.00320 * 8 6 5 34 34 H 1.09003 * 109.46887 * 59.99495 * 8 6 5 35 35 H 1.08996 * 110.96762 * 211.70347 * 11 9 8 36 36 H 1.09000 * 110.96962 * 335.43263 * 11 9 8 37 37 H 1.09002 * 110.48197 * 143.47290 * 12 11 9 38 38 H 1.09000 * 110.48906 * 266.11727 * 12 11 9 39 39 H 0.97004 * 124.34715 * 179.59440 * 15 13 12 40 40 H 1.09002 * 110.36463 * 142.97358 * 16 5 4 41 41 H 1.09001 * 110.36471 * 265.17904 * 16 5 4 42 42 H 0.97003 * 119.99808 * 87.19509 * 19 17 16 43 43 H 0.97001 * 120.00038 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0761 -0.7891 -1.2086 5 7 3.2446 -1.5494 -0.7416 6 6 3.9924 -2.3810 -1.4937 7 8 3.7193 -2.5518 -2.6630 8 6 5.1680 -3.0985 -0.8819 9 6 5.8400 -3.9730 -1.9424 10 1 6.0798 -3.3785 -2.8239 11 6 7.1204 -4.6196 -1.3690 12 6 6.5883 -5.9822 -0.8681 13 6 5.3583 -6.2332 -1.7123 14 8 4.8080 -7.3069 -1.8360 15 7 4.9646 -5.0934 -2.3059 16 6 3.4633 -1.2508 0.6854 17 6 2.0790 -0.7974 1.2124 18 1 1.4452 -1.6560 1.4347 19 7 2.2214 0.0656 2.3876 20 6 2.1868 -0.4774 3.6442 21 1 2.0540 -1.5420 3.7690 22 6 2.3223 0.3402 4.7577 23 7 2.4846 1.6376 4.6057 24 14 2.2743 -0.4005 6.4719 25 1 3.6497 -0.7749 6.8880 26 1 1.7221 0.5946 7.4258 27 1 1.4128 -1.6101 6.4645 28 1 -0.3633 -1.0272 0.0302 29 1 -0.3633 0.5398 0.8744 30 1 -0.3633 0.4874 -0.9047 31 1 1.3130 -1.4731 -1.5801 32 1 2.3716 -0.0991 -1.9990 33 1 5.8840 -2.3679 -0.5059 34 1 4.8230 -3.7255 -0.0597 35 1 7.8707 -4.7562 -2.1477 36 1 7.5199 -4.0292 -0.5444 37 1 7.3295 -6.7646 -1.0316 38 1 6.3212 -5.9230 0.1870 39 1 4.2001 -5.0207 -2.8985 40 1 3.7961 -2.1446 1.2133 41 1 4.1946 -0.4504 0.7977 42 1 2.3404 1.0217 2.2756 43 1 2.5789 2.2090 5.3838 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082802724.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:08:23 Heat of formation + Delta-G solvation = -89.454177 kcal Electronic energy + Delta-G solvation = -24145.637167 eV Core-core repulsion = 20610.438882 eV Total energy + Delta-G solvation = -3535.198285 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.68493 -40.77259 -38.99728 -37.55069 -35.84271 -34.01267 -32.57815 -32.17792 -31.61770 -29.12573 -27.88347 -26.13035 -25.69453 -23.08592 -22.15025 -21.49695 -21.28856 -20.20223 -19.12383 -18.56229 -17.89545 -17.43199 -17.09953 -16.54427 -16.26344 -15.96477 -15.52074 -15.30404 -14.85230 -14.61002 -14.43650 -14.42722 -14.15081 -13.95366 -13.79344 -13.41331 -13.27254 -13.04977 -12.90069 -12.84901 -12.81295 -12.19648 -12.16905 -12.14606 -12.00593 -11.82350 -11.69876 -11.42174 -11.02448 -10.93783 -10.82831 -10.16714 -9.66614 -9.02003 -7.92971 -5.22314 1.51736 1.53048 1.55908 1.60345 1.62133 1.99674 2.44681 2.58408 3.28513 3.39202 3.49669 3.63486 3.76544 3.81277 3.94705 3.95462 4.15393 4.17734 4.31765 4.40313 4.47320 4.49289 4.58113 4.61655 4.70194 4.82926 4.87712 4.90457 4.96634 5.08930 5.12250 5.13007 5.19169 5.22771 5.34218 5.44652 5.56997 5.84210 6.09449 6.27974 6.54566 7.11719 7.22856 7.36372 8.07279 8.31717 9.29688 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.014899 B = 0.003840 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.861850 B = 7289.445531 C = 8460.092184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.106 4.106 3 H 0.080 0.920 4 C 0.119 3.881 5 N -0.614 5.614 6 C 0.521 3.479 7 O -0.582 6.582 8 C -0.147 4.147 9 C 0.144 3.856 10 H 0.099 0.901 11 C -0.114 4.114 12 C -0.152 4.152 13 C 0.504 3.496 14 O -0.598 6.598 15 N -0.719 5.719 16 C 0.086 3.914 17 C 0.169 3.831 18 H 0.060 0.940 19 N -0.719 5.719 20 C -0.241 4.241 21 H 0.078 0.922 22 C -0.065 4.065 23 N -0.965 5.965 24 Si 0.965 3.035 25 H -0.286 1.286 26 H -0.300 1.300 27 H -0.272 1.272 28 H 0.055 0.945 29 H 0.047 0.953 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.135 0.865 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.122 0.878 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.406 0.594 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.377 0.623 43 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.975 -7.370 -11.781 16.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.126 4.126 3 H 0.098 0.902 4 C -0.004 4.004 5 N -0.347 5.347 6 C 0.312 3.688 7 O -0.463 6.463 8 C -0.187 4.187 9 C 0.038 3.962 10 H 0.117 0.883 11 C -0.152 4.152 12 C -0.192 4.192 13 C 0.292 3.708 14 O -0.480 6.480 15 N -0.371 5.371 16 C -0.040 4.040 17 C 0.058 3.942 18 H 0.078 0.922 19 N -0.358 5.358 20 C -0.373 4.373 21 H 0.095 0.905 22 C -0.258 4.258 23 N -0.615 5.615 24 Si 0.795 3.205 25 H -0.213 1.213 26 H -0.227 1.227 27 H -0.197 1.197 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.153 0.847 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.141 0.859 37 H 0.133 0.867 38 H 0.136 0.864 39 H 0.243 0.757 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.210 0.790 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 8.669 -8.170 -12.263 17.096 hybrid contribution -0.775 0.411 0.771 1.168 sum 7.894 -7.758 -11.492 15.955 Atomic orbital electron populations 1.21614 0.93125 1.01956 1.01999 1.22428 0.97221 0.99290 0.93616 0.90176 1.21926 0.87615 0.94401 0.96477 1.48595 1.29952 1.44121 1.12018 1.20922 0.84078 0.78181 0.85612 1.90644 1.72366 1.65570 1.17751 1.22278 0.96022 1.00389 1.00051 1.21588 0.89730 0.87064 0.97774 0.88291 1.22749 0.94988 0.94162 1.03263 1.22422 0.95051 1.00741 1.00941 1.21787 0.86575 0.82761 0.79665 1.90710 1.62795 1.28475 1.66006 1.46541 1.32312 1.09711 1.48528 1.23177 1.00738 1.01050 0.79008 1.21509 0.93160 0.93272 0.86221 0.92179 1.42366 1.86467 1.06256 1.00670 1.19578 1.40534 0.92873 0.84293 0.90459 1.25429 1.03369 0.95787 1.01181 1.69793 1.58147 1.03927 1.29642 0.85271 0.77642 0.77156 0.80453 1.21251 1.22723 1.19740 0.92555 0.93362 0.90942 0.91629 0.91360 0.84666 0.87934 0.87837 0.85926 0.86698 0.86446 0.75654 0.90210 0.91388 0.79025 0.94021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.44 9.13 71.98 0.66 -2.79 16 2 C -0.11 -3.03 3.19 -9.61 -0.03 -3.06 16 3 H 0.08 2.39 8.01 -2.39 -0.02 2.37 16 4 C 0.12 3.17 6.46 86.73 0.56 3.73 16 5 N -0.61 -16.43 3.33 -811.79 -2.70 -19.13 16 6 C 0.52 13.24 7.75 87.66 0.68 13.92 16 7 O -0.58 -17.83 15.43 -3.03 -0.05 -17.88 16 8 C -0.15 -2.44 4.31 29.85 0.13 -2.31 16 9 C 0.14 2.15 3.00 45.45 0.14 2.29 16 10 H 0.10 1.50 7.91 -2.39 -0.02 1.49 16 11 C -0.11 -0.93 6.70 31.65 0.21 -0.72 16 12 C -0.15 -1.98 6.86 30.59 0.21 -1.77 16 13 C 0.50 11.98 8.43 87.90 0.74 12.72 16 14 O -0.60 -20.40 18.03 -3.03 -0.05 -20.46 16 15 N -0.72 -15.37 5.52 -439.46 -2.43 -17.80 16 16 C 0.09 2.47 6.38 86.85 0.55 3.02 16 17 C 0.17 5.77 3.16 46.38 0.15 5.92 16 18 H 0.06 2.16 7.99 -2.39 -0.02 2.14 16 19 N -0.72 -31.81 5.24 -316.40 -1.66 -33.47 16 20 C -0.24 -12.04 9.96 84.03 0.84 -11.20 16 21 H 0.08 3.71 7.83 -2.91 -0.02 3.69 16 22 C -0.06 -3.42 5.50 84.86 0.47 -2.96 16 23 N -0.97 -54.94 13.06 21.65 0.28 -54.66 16 24 Si 0.97 43.04 29.55 68.60 2.03 45.06 16 25 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 26 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 27 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 28 H 0.06 1.44 8.13 -2.39 -0.02 1.43 16 29 H 0.05 1.47 8.14 -2.39 -0.02 1.46 16 30 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.07 1.75 7.82 -2.38 -0.02 1.73 16 32 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.14 1.57 8.09 -2.39 -0.02 1.55 16 34 H 0.10 1.69 7.85 -2.39 -0.02 1.67 16 35 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.12 0.43 7.86 -2.39 -0.02 0.41 16 37 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.41 10.00 8.37 -92.71 -0.78 9.22 16 40 H 0.08 2.14 7.48 -2.39 -0.02 2.12 16 41 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.38 18.16 7.77 -92.71 -0.72 17.44 16 43 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 Total: -1.00 -69.18 352.73 0.25 -68.93 By element: Atomic # 1 Polarization: 33.08 SS G_CDS: -0.47 Total: 32.61 kcal Atomic # 6 Polarization: 11.49 SS G_CDS: 5.30 Total: 16.79 kcal Atomic # 7 Polarization: -118.55 SS G_CDS: -6.50 Total: -125.06 kcal Atomic # 8 Polarization: -38.23 SS G_CDS: -0.10 Total: -38.33 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Total: -69.18 0.25 -68.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082802724.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.524 kcal (2) G-P(sol) polarization free energy of solvation -69.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds