Wall clock time and date at job start Tue Mar 31 2020 04:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.08995 * 110.00078 * 2 1 4 4 C 1.54331 * 109.88287 * 238.90603 * 2 1 3 5 5 H 1.08997 * 110.72118 * 336.93751 * 4 2 1 6 6 N 1.46505 * 110.71987 * 100.02694 * 4 2 1 7 7 C 1.34777 * 120.00204 * 205.00296 * 6 4 2 8 8 O 1.21279 * 119.99686 * 359.97438 * 7 6 4 9 9 C 1.50700 * 120.00063 * 180.02562 * 7 6 4 10 10 H 1.08992 * 109.40226 * 60.16685 * 9 7 6 11 11 C 1.53060 * 109.39975 * 180.02562 * 9 7 6 12 12 C 1.53348 * 108.42502 * 168.93980 * 11 9 7 13 13 C 1.52911 * 108.67817 * 292.46823 * 12 11 9 14 14 N 1.45757 * 110.48698 * 50.74890 * 13 12 11 15 15 C 1.33349 * 124.10607 * 341.21490 * 14 13 12 16 16 O 1.21283 * 118.24626 * 181.94108 * 15 14 13 17 17 C 1.55158 * 102.94506 * 218.38983 * 4 2 1 18 18 C 1.54913 * 101.57957 * 35.50406 * 17 4 2 19 19 N 1.47021 * 109.88404 * 121.10299 * 2 1 3 20 20 C 1.36936 * 125.64495 * 298.39419 * 19 2 1 21 21 H 1.08002 * 120.00389 * 349.84601 * 20 19 2 22 22 C 1.38816 * 120.00227 * 169.85422 * 20 19 2 23 23 N 1.31620 * 119.99459 * 350.46185 * 22 20 19 24 24 Si 1.86801 * 120.00208 * 170.46366 * 22 20 19 25 25 H 1.48496 * 109.47032 * 94.13478 * 24 22 20 26 26 H 1.48503 * 109.46837 * 214.13265 * 24 22 20 27 27 H 1.48503 * 109.46951 * 334.13227 * 24 22 20 28 28 H 1.09000 * 109.47687 * 181.09131 * 1 2 3 29 29 H 1.09002 * 109.47166 * 301.09283 * 1 2 3 30 30 H 1.09010 * 109.46996 * 61.08848 * 1 2 3 31 31 H 0.97001 * 119.99585 * 25.00190 * 6 4 2 32 32 H 1.09003 * 109.67796 * 49.20822 * 11 9 7 33 33 H 1.09003 * 109.70410 * 288.68989 * 11 9 7 34 34 H 1.09002 * 109.60242 * 172.70882 * 12 11 9 35 35 H 1.09008 * 109.59975 * 52.22762 * 12 11 9 36 36 H 1.09002 * 109.30438 * 290.44239 * 13 12 11 37 37 H 1.09001 * 109.13636 * 170.95730 * 13 12 11 38 38 H 0.96998 * 117.94919 * 160.92592 * 14 13 12 39 39 H 1.09000 * 110.99967 * 153.57335 * 17 4 2 40 40 H 1.08998 * 111.00581 * 277.43196 * 17 4 2 41 41 H 1.08998 * 110.36460 * 204.15587 * 18 17 4 42 42 H 1.08995 * 110.45898 * 81.87257 * 18 17 4 43 43 H 0.97007 * 119.99707 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9027 1.0242 0.0000 4 6 2.0548 -0.7495 -1.2428 5 1 1.3039 -1.4435 -1.6203 6 7 2.4554 0.1961 -2.2876 7 6 2.4581 -0.1882 -3.5794 8 8 2.1293 -1.3170 -3.8769 9 6 2.8708 0.7844 -4.6540 10 1 3.8960 1.1082 -4.4750 11 6 2.7844 0.0995 -6.0201 12 6 2.9351 1.1688 -7.1088 13 6 1.7079 2.0802 -7.0732 14 7 1.4649 2.5560 -5.7171 15 6 1.9632 1.9803 -4.6223 16 8 1.6632 2.4444 -3.5426 17 6 3.2876 -1.5143 -0.6925 18 6 2.8144 -1.8796 0.7366 19 7 2.0300 -0.7142 1.1838 20 6 1.8037 -0.3566 2.4862 21 1 1.3565 0.5997 2.7138 22 6 2.1494 -1.2233 3.5140 23 7 2.5175 -2.4567 3.2389 24 14 2.0918 -0.6392 5.2874 25 1 0.7784 -0.9933 5.8828 26 1 3.1781 -1.2941 6.0597 27 1 2.2734 0.8341 5.3294 28 1 -0.3634 -1.0274 0.0196 29 1 -0.3633 0.5307 0.8800 30 1 -0.3633 0.4969 -0.8997 31 1 2.7188 1.0989 -2.0495 32 1 1.8183 -0.3948 -6.1224 33 1 3.5842 -0.6352 -6.1140 34 1 3.0063 0.6892 -8.0851 35 1 3.8334 1.7573 -6.9215 36 1 0.8368 1.5255 -7.4218 37 1 1.8776 2.9338 -7.7295 38 1 0.9093 3.3429 -5.6041 39 1 3.4850 -2.4111 -1.2798 40 1 4.1654 -0.8689 -0.6604 41 1 3.6715 -2.0340 1.3921 42 1 2.1890 -2.7719 0.7144 43 1 2.7587 -3.0624 3.9571 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088638578.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:03:08 Heat of formation + Delta-G solvation = -79.070325 kcal Electronic energy + Delta-G solvation = -24714.905419 eV Core-core repulsion = 21180.157412 eV Total energy + Delta-G solvation = -3534.748008 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.98727 -40.40265 -39.11908 -37.50377 -35.54936 -34.20310 -33.65726 -32.10120 -31.11580 -30.24780 -26.92507 -25.93396 -25.35287 -23.76449 -22.40316 -21.64912 -21.46519 -20.01589 -18.74773 -18.54095 -18.12738 -17.55631 -17.20191 -16.60247 -16.10334 -15.86874 -15.56564 -15.48570 -15.18303 -14.93836 -14.51388 -14.38831 -14.26912 -14.00503 -13.79721 -13.25676 -12.98047 -12.91822 -12.81852 -12.61393 -12.40373 -12.29634 -12.22139 -12.10814 -11.94965 -11.91054 -11.64135 -11.54688 -11.04147 -10.79857 -10.68089 -10.05911 -9.98944 -8.88701 -7.86474 -5.21933 1.27232 1.46899 1.48139 1.57969 1.60344 2.14955 2.35857 2.52039 3.32865 3.42761 3.50685 3.60349 3.78887 3.82064 3.89007 3.91123 4.16057 4.21956 4.26998 4.47061 4.54309 4.59247 4.63680 4.76308 4.79144 4.87294 4.91017 5.02262 5.08765 5.09392 5.11929 5.30714 5.36558 5.46497 5.55377 5.60050 5.69322 5.80673 6.20011 6.23303 6.53078 7.07805 7.10503 7.19834 7.75202 8.42148 9.25544 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.034360 B = 0.003483 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.701098 B = 8038.223946 C = 8498.367445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.152 3.848 3 H 0.044 0.956 4 C 0.150 3.850 5 H 0.078 0.922 6 N -0.694 5.694 7 C 0.523 3.477 8 O -0.573 6.573 9 C -0.120 4.120 10 H 0.154 0.846 11 C -0.104 4.104 12 C -0.130 4.130 13 C 0.100 3.900 14 N -0.705 5.705 15 C 0.524 3.476 16 O -0.583 6.583 17 C -0.137 4.137 18 C 0.182 3.818 19 N -0.612 5.612 20 C -0.236 4.236 21 H 0.080 0.920 22 C -0.063 4.063 23 N -0.949 5.949 24 Si 0.978 3.022 25 H -0.288 1.288 26 H -0.293 1.293 27 H -0.268 1.268 28 H 0.036 0.964 29 H 0.046 0.954 30 H 0.059 0.941 31 H 0.412 0.588 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.114 0.886 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.111 0.889 38 H 0.408 0.592 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.042 0.958 42 H -0.003 1.003 43 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.212 10.851 -25.508 27.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.045 3.955 3 H 0.062 0.938 4 C 0.044 3.956 5 H 0.096 0.904 6 N -0.344 5.344 7 C 0.309 3.691 8 O -0.453 6.453 9 C -0.143 4.143 10 H 0.171 0.829 11 C -0.142 4.142 12 C -0.168 4.168 13 C -0.023 4.023 14 N -0.356 5.356 15 C 0.309 3.691 16 O -0.464 6.464 17 C -0.176 4.176 18 C 0.056 3.944 19 N -0.338 5.338 20 C -0.365 4.365 21 H 0.097 0.903 22 C -0.257 4.257 23 N -0.597 5.597 24 Si 0.806 3.194 25 H -0.215 1.215 26 H -0.219 1.219 27 H -0.193 1.193 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.078 0.922 31 H 0.250 0.750 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.133 0.867 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.129 0.871 38 H 0.245 0.755 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.060 0.940 42 H 0.015 0.985 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 1.986 10.038 -25.018 27.030 hybrid contribution -0.340 0.404 1.613 1.697 sum 1.646 10.442 -23.405 25.682 Atomic orbital electron populations 1.22068 0.97032 1.00464 1.00605 1.21158 0.93225 0.94920 0.86232 0.93825 1.21717 0.96441 0.90796 0.86611 0.90390 1.46008 1.66682 1.16169 1.05585 1.20483 0.76939 0.88104 0.83541 1.90686 1.49740 1.22137 1.82711 1.21510 1.02747 0.93244 0.96844 0.82866 1.21544 1.04143 0.98520 0.89972 1.21956 0.98252 0.96344 1.00206 1.21772 0.99068 1.00215 0.81266 1.45400 1.51387 1.32112 1.06704 1.19720 0.80770 0.84364 0.84233 1.90785 1.61017 1.64913 1.29644 1.23207 0.97510 1.00163 0.96734 1.21143 0.93917 0.88510 0.90781 1.44741 1.58982 1.29277 1.00783 1.19328 1.35408 1.00011 0.81761 0.90267 1.25652 1.02468 0.95567 1.01968 1.70163 1.52591 1.05364 1.31581 0.85084 0.76830 0.77859 0.79646 1.21511 1.21920 1.19301 0.94466 0.93483 0.92180 0.74962 0.91770 0.89430 0.86734 0.89561 0.90662 0.87127 0.75542 0.90816 0.90706 0.94007 0.98452 0.94282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.95 9.13 71.98 0.66 -5.29 16 2 C 0.15 6.65 3.48 45.34 0.16 6.81 16 3 H 0.04 1.89 7.72 -2.39 -0.02 1.87 16 4 C 0.15 5.92 2.85 46.18 0.13 6.05 16 5 H 0.08 3.33 7.25 -2.39 -0.02 3.32 16 6 N -0.69 -22.60 4.67 -436.90 -2.04 -24.64 16 7 C 0.52 15.78 7.07 87.66 0.62 16.40 16 8 O -0.57 -20.98 15.44 -3.03 -0.05 -21.03 16 9 C -0.12 -2.35 2.77 -12.43 -0.03 -2.39 16 10 H 0.15 2.23 8.14 -2.39 -0.02 2.21 16 11 C -0.10 -1.50 4.78 30.73 0.15 -1.35 16 12 C -0.13 -0.76 6.02 30.68 0.18 -0.57 16 13 C 0.10 0.57 7.17 86.49 0.62 1.19 16 14 N -0.71 -9.23 5.45 -467.34 -2.55 -11.77 16 15 C 0.52 11.03 7.28 87.71 0.64 11.67 16 16 O -0.58 -17.09 15.53 -3.04 -0.05 -17.13 16 17 C -0.14 -5.59 6.77 31.99 0.22 -5.37 16 18 C 0.18 9.43 5.42 86.86 0.47 9.90 16 19 N -0.61 -32.50 3.13 -668.26 -2.09 -34.59 16 20 C -0.24 -13.51 9.85 84.03 0.83 -12.68 16 21 H 0.08 4.37 7.85 -2.91 -0.02 4.34 16 22 C -0.06 -3.66 5.40 84.86 0.46 -3.21 16 23 N -0.95 -58.18 10.68 21.65 0.23 -57.95 16 24 Si 0.98 46.62 29.56 68.60 2.03 48.65 16 25 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 26 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 27 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 28 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.05 2.00 8.04 -2.39 -0.02 1.98 16 30 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 31 H 0.41 12.71 6.99 -92.71 -0.65 12.06 16 32 H 0.06 1.19 7.72 -2.39 -0.02 1.17 16 33 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 35 H 0.09 0.37 8.12 -2.38 -0.02 0.35 16 36 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 37 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 38 H 0.41 4.67 8.80 -92.71 -0.82 3.85 16 39 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 40 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 41 H 0.04 2.38 6.94 -2.39 -0.02 2.36 16 42 H 0.00 -0.15 8.07 -2.39 -0.02 -0.16 16 43 H 0.25 14.75 8.31 -92.70 -0.77 13.98 16 Total: -1.00 -76.40 342.86 0.15 -76.26 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: -0.44 Total: 21.04 kcal Atomic # 6 Polarization: 16.06 SS G_CDS: 5.09 Total: 21.16 kcal Atomic # 7 Polarization: -122.50 SS G_CDS: -6.44 Total: -128.95 kcal Atomic # 8 Polarization: -38.06 SS G_CDS: -0.09 Total: -38.16 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -76.40 0.15 -76.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088638578.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.815 kcal (2) G-P(sol) polarization free energy of solvation -76.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds