Wall clock time and date at job start Tue Mar 31 2020 04:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.86956 * 2 1 4 4 C 1.54321 * 109.88204 * 238.98662 * 2 1 3 5 5 H 1.09002 * 110.72109 * 336.75211 * 4 2 1 6 6 N 1.46505 * 110.72218 * 99.85110 * 4 2 1 7 7 C 1.34771 * 119.99559 * 202.56055 * 6 4 2 8 8 O 1.21284 * 120.00500 * 359.97438 * 7 6 4 9 9 C 1.50704 * 119.99658 * 179.97438 * 7 6 4 10 10 H 1.09002 * 109.60286 * 59.99562 * 9 7 6 11 11 C 1.53345 * 109.60508 * 180.32062 * 9 7 6 12 12 C 1.53067 * 108.42686 * 187.28541 * 11 9 7 13 13 C 1.50182 * 109.89235 * 311.10173 * 12 11 9 14 14 O 1.21282 * 118.24753 * 197.60569 * 13 12 11 15 15 N 1.33351 * 123.50547 * 17.57726 * 13 12 11 16 16 C 1.45819 * 124.17297 * 357.96340 * 15 13 12 17 17 C 1.55157 * 103.10033 * 218.29831 * 4 2 1 18 18 C 1.55392 * 101.36576 * 35.49711 * 17 4 2 19 19 N 1.47019 * 109.88144 * 121.17412 * 2 1 3 20 20 C 1.36931 * 125.65157 * 298.32321 * 19 2 1 21 21 H 1.08004 * 119.99907 * 0.02562 * 20 19 2 22 22 C 1.38813 * 120.00300 * 179.97438 * 20 19 2 23 23 N 1.31622 * 120.00014 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00112 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46942 * 90.00018 * 24 22 20 26 26 H 1.48499 * 109.46996 * 209.99955 * 24 22 20 27 27 H 1.48500 * 109.47208 * 329.99950 * 24 22 20 28 28 H 1.09000 * 109.47185 * 181.01334 * 1 2 3 29 29 H 1.08996 * 109.47557 * 301.01377 * 1 2 3 30 30 H 1.09002 * 109.47281 * 61.01651 * 1 2 3 31 31 H 0.96995 * 119.99603 * 22.54801 * 6 4 2 32 32 H 1.08995 * 109.67515 * 307.02031 * 11 9 7 33 33 H 1.09009 * 109.66956 * 67.55027 * 11 9 7 34 34 H 1.08999 * 109.40186 * 71.22707 * 12 11 9 35 35 H 1.09000 * 109.40325 * 190.97374 * 12 11 9 36 36 H 0.97004 * 117.94714 * 177.77803 * 15 13 12 37 37 H 1.09000 * 109.17532 * 258.54081 * 16 15 13 38 38 H 1.08994 * 109.46586 * 139.13386 * 16 15 13 39 39 H 1.09004 * 111.00537 * 153.66574 * 17 4 2 40 40 H 1.09001 * 111.00741 * 277.51995 * 17 4 2 41 41 H 1.08999 * 110.34334 * 204.17153 * 18 17 4 42 42 H 1.08998 * 110.44545 * 81.91304 * 18 17 4 43 43 H 0.96992 * 120.00405 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 6 2.0548 -0.7477 -1.2438 5 1 1.3051 -1.4436 -1.6203 6 7 2.4516 0.1993 -2.2889 7 6 2.5006 -0.1989 -3.5755 8 8 2.2168 -1.3411 -3.8682 9 6 2.9082 0.7754 -4.6506 10 1 3.9157 1.1401 -4.4507 11 6 2.8748 0.0784 -6.0161 12 6 3.4649 1.0301 -7.0597 13 6 2.8338 2.3866 -6.9289 14 8 2.9348 3.1587 -7.8588 15 7 2.1680 2.7874 -5.8452 16 6 1.9317 1.9521 -4.6736 17 6 3.2897 -1.5130 -0.6990 18 6 2.8145 -1.8804 0.7341 19 7 2.0299 -0.7157 1.1829 20 6 1.8049 -0.3591 2.4857 21 1 1.2141 0.5164 2.7116 22 6 2.3352 -1.1233 3.5160 23 7 3.0548 -2.1905 3.2408 24 14 2.0276 -0.6372 5.2933 25 1 0.7870 -1.2936 5.7784 26 1 3.1758 -1.0688 6.1303 27 1 1.8755 0.8372 5.3840 28 1 -0.3633 -1.0275 0.0182 29 1 -0.3634 0.5295 0.8807 30 1 -0.3634 0.4980 -0.8990 31 1 2.6787 1.1127 -2.0547 32 1 3.4674 -0.8355 -5.9762 33 1 1.8449 -0.1627 -6.2799 34 1 4.5406 1.1148 -6.9052 35 1 3.2736 0.6365 -8.0579 36 1 1.8208 3.6931 -5.8341 37 1 0.9105 1.5722 -4.7048 38 1 2.0639 2.5476 -3.7703 39 1 3.4871 -2.4074 -1.2900 40 1 4.1668 -0.8667 -0.6664 41 1 3.6716 -2.0356 1.3894 42 1 2.1891 -2.7728 0.7108 43 1 3.4250 -2.7247 3.9607 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088691607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:03:22 Heat of formation + Delta-G solvation = -55.783585 kcal Electronic energy + Delta-G solvation = -24290.265389 eV Core-core repulsion = 20756.527170 eV Total energy + Delta-G solvation = -3533.738219 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.88079 -39.61589 -37.78179 -36.38415 -34.19206 -33.29910 -32.17286 -30.56391 -30.22985 -28.52668 -25.27489 -24.84503 -24.06704 -23.24486 -20.95238 -20.26129 -19.94594 -19.21629 -17.87037 -16.99960 -16.72783 -16.40878 -15.91036 -15.53062 -15.12664 -14.80558 -14.43808 -14.08962 -14.00835 -13.90436 -13.66627 -13.32062 -12.87545 -12.27119 -12.19422 -12.13626 -11.99502 -11.64996 -11.55118 -11.35835 -11.20900 -10.91937 -10.89077 -10.62862 -10.49815 -10.14608 -10.06057 -9.85720 -9.76254 -9.61091 -9.46977 -8.77687 -8.69443 -6.94247 -5.71448 -3.14678 2.33099 2.53602 2.91646 3.16888 3.35502 3.40701 3.42548 4.17057 4.25241 4.31582 4.40315 4.45145 4.87463 4.93671 4.96125 5.08585 5.22198 5.30817 5.35785 5.46364 5.46929 5.55518 5.66946 5.74066 5.84555 6.04111 6.16746 6.22249 6.25556 6.39987 6.44546 6.51904 6.63303 6.78940 6.94391 7.01873 7.44834 7.56161 7.57727 7.79136 7.87627 8.22754 8.29480 9.14431 9.75378 10.38647 11.31840 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.034752 B = 0.003070 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.508034 B = 9118.229156 C = 9477.037197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.156 3.844 3 H 0.035 0.965 4 C 0.134 3.866 5 H 0.093 0.907 6 N -0.713 5.713 7 C 0.521 3.479 8 O -0.534 6.534 9 C -0.126 4.126 10 H 0.107 0.893 11 C -0.104 4.104 12 C -0.136 4.136 13 C 0.520 3.480 14 O -0.560 6.560 15 N -0.718 5.718 16 C 0.119 3.881 17 C -0.153 4.153 18 C 0.153 3.847 19 N -0.595 5.595 20 C -0.222 4.222 21 H 0.078 0.922 22 C -0.009 4.009 23 N -0.921 5.921 24 Si 0.914 3.086 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.281 1.281 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.037 0.963 31 H 0.398 0.602 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.402 0.598 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.109 0.891 42 H 0.015 0.985 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.121 7.120 -15.446 17.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.048 3.952 3 H 0.053 0.947 4 C 0.029 3.971 5 H 0.111 0.889 6 N -0.363 5.363 7 C 0.305 3.695 8 O -0.410 6.410 9 C -0.148 4.148 10 H 0.125 0.875 11 C -0.142 4.142 12 C -0.176 4.176 13 C 0.307 3.693 14 O -0.439 6.439 15 N -0.370 5.370 16 C -0.006 4.006 17 C -0.193 4.193 18 C 0.028 3.972 19 N -0.320 5.320 20 C -0.350 4.350 21 H 0.096 0.904 22 C -0.205 4.205 23 N -0.569 5.569 24 Si 0.745 3.255 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.207 1.207 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.232 0.768 32 H 0.109 0.891 33 H 0.097 0.903 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.238 0.762 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.127 0.873 42 H 0.033 0.967 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.130 6.367 -15.894 17.122 hybrid contribution -0.280 0.966 1.280 1.628 sum -0.410 7.333 -14.613 16.355 Atomic orbital electron populations 1.22249 0.97889 1.01479 0.99895 1.20982 0.92595 0.94736 0.86936 0.94720 1.22198 0.97752 0.90765 0.86350 0.88870 1.46131 1.68594 1.15069 1.06550 1.20101 0.77726 0.88537 0.83150 1.90725 1.48398 1.19702 1.82181 1.21672 1.01598 0.95548 0.95997 0.87460 1.21495 1.03351 0.98420 0.90902 1.21699 1.01906 0.91763 1.02195 1.20276 0.77709 0.89844 0.81453 1.90768 1.60348 1.55060 1.37709 1.45435 1.57066 1.17609 1.16908 1.21336 0.99172 0.91681 0.88402 1.23477 0.96652 0.99346 0.99822 1.22036 0.97381 0.88376 0.89440 1.44478 1.59249 1.28232 1.00062 1.19012 1.27296 1.08247 0.80472 0.90450 1.24792 1.00276 0.97348 0.98089 1.69787 1.39024 1.17780 1.30272 0.86084 0.77284 0.77730 0.84438 1.21616 1.21651 1.20702 0.92909 0.92705 0.94367 0.76807 0.89149 0.90320 0.87940 0.87651 0.76248 0.90698 0.89615 0.91940 0.91991 0.87344 0.96713 0.93637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 9.13 37.16 0.34 -2.34 16 2 C 0.16 2.88 3.48 -66.96 -0.23 2.65 16 3 H 0.04 0.62 7.70 -51.93 -0.40 0.22 16 4 C 0.13 2.20 2.79 -66.09 -0.18 2.01 16 5 H 0.09 1.67 7.33 -51.93 -0.38 1.29 16 6 N -0.71 -8.66 5.10 -52.03 -0.27 -8.92 16 7 C 0.52 6.21 7.14 -10.99 -0.08 6.13 16 8 O -0.53 -8.54 15.58 5.55 0.09 -8.45 16 9 C -0.13 -1.01 2.59 -91.63 -0.24 -1.25 16 10 H 0.11 0.72 8.12 -51.93 -0.42 0.29 16 11 C -0.10 -0.84 4.72 -26.52 -0.13 -0.97 16 12 C -0.14 -1.03 6.03 -28.10 -0.17 -1.20 16 13 C 0.52 5.16 7.71 -11.87 -0.09 5.06 16 14 O -0.56 -7.86 17.78 5.56 0.10 -7.76 16 15 N -0.72 -5.42 5.45 -61.34 -0.33 -5.76 16 16 C 0.12 0.78 6.34 -4.45 -0.03 0.75 16 17 C -0.15 -2.83 6.80 -24.32 -0.17 -3.00 16 18 C 0.15 3.56 5.90 -2.26 -0.01 3.55 16 19 N -0.60 -14.13 3.13 -162.27 -0.51 -14.63 16 20 C -0.22 -5.82 9.89 -15.06 -0.15 -5.97 16 21 H 0.08 1.96 7.83 -52.48 -0.41 1.55 16 22 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 23 N -0.92 -25.94 10.09 55.49 0.56 -25.39 16 24 Si 0.91 21.32 29.55 -169.99 -5.02 16.29 16 25 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.05 0.98 8.04 -51.93 -0.42 0.57 16 30 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.40 3.80 7.98 -40.82 -0.33 3.47 16 32 H 0.09 0.79 7.90 -51.93 -0.41 0.38 16 33 H 0.08 0.70 8.13 -51.92 -0.42 0.27 16 34 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.40 2.66 8.80 -40.82 -0.36 2.30 16 37 H 0.07 0.51 8.11 -51.93 -0.42 0.09 16 38 H 0.09 0.40 7.85 -51.93 -0.41 -0.01 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.11 2.86 5.87 -51.93 -0.31 2.55 16 42 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 344.98 15.07 5.20 5.20 Total: -1.00 -32.81 344.98 -8.19 -41.01 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -6.78 Total: 3.33 kcal Atomic # 6 Polarization: 6.32 SS G_CDS: -1.23 Total: 5.08 kcal Atomic # 7 Polarization: -54.15 SS G_CDS: -0.55 Total: -54.70 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: 0.19 Total: -16.22 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.81 -8.19 -41.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088691607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.777 kcal (2) G-P(sol) polarization free energy of solvation -32.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds