Wall clock time and date at job start Tue Mar 31 2020 04:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.99585 * 2 1 4 4 C 1.54329 * 109.87653 * 238.91004 * 2 1 3 5 5 H 1.08999 * 110.72240 * 336.92528 * 4 2 1 6 6 N 1.46496 * 110.71935 * 100.02878 * 4 2 1 7 7 C 1.34778 * 119.99894 * 202.55873 * 6 4 2 8 8 O 1.21283 * 119.99877 * 359.97438 * 7 6 4 9 9 C 1.50700 * 120.00175 * 180.02562 * 7 6 4 10 10 C 1.52998 * 110.88892 * 56.18248 * 9 7 6 11 11 C 1.54831 * 111.07389 * 292.23883 * 9 7 6 12 12 N 1.46765 * 105.49704 * 216.48709 * 11 9 7 13 13 C 1.34418 * 111.29577 * 17.03926 * 12 11 9 14 14 O 1.21284 * 124.94191 * 179.55193 * 13 12 11 15 15 C 1.51281 * 110.11952 * 359.59413 * 13 12 11 16 16 C 1.55156 * 103.09661 * 218.47341 * 4 2 1 17 17 C 1.54914 * 101.58347 * 35.41694 * 16 4 2 18 18 N 1.47311 * 110.06459 * 121.17792 * 2 1 3 19 19 C 1.36939 * 125.61465 * 298.32007 * 18 2 1 20 20 H 1.07998 * 120.00078 * 359.79827 * 19 18 2 21 21 C 1.38813 * 120.00031 * 179.80274 * 19 18 2 22 22 N 1.31627 * 119.99824 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00190 * 179.97438 * 21 19 18 24 24 H 1.48510 * 109.46916 * 89.99965 * 23 21 19 25 25 H 1.48493 * 109.47476 * 209.99722 * 23 21 19 26 26 H 1.48499 * 109.47198 * 330.00341 * 23 21 19 27 27 H 1.09005 * 109.46974 * 181.09811 * 1 2 3 28 28 H 1.09001 * 109.46912 * 301.08732 * 1 2 3 29 29 H 1.08992 * 109.47495 * 61.09002 * 1 2 3 30 30 H 0.96996 * 120.00357 * 22.55048 * 6 4 2 31 31 H 1.08994 * 109.47102 * 183.81056 * 10 9 7 32 32 H 1.09001 * 109.46978 * 303.81670 * 10 9 7 33 33 H 1.09003 * 109.46690 * 63.81520 * 10 9 7 34 34 H 1.09001 * 110.21730 * 97.49592 * 11 9 7 35 35 H 1.08998 * 110.33453 * 335.54498 * 11 9 7 36 36 H 0.96997 * 124.35231 * 197.05812 * 12 11 9 37 37 H 1.09002 * 110.48898 * 102.42432 * 15 13 12 38 38 H 1.08998 * 110.48664 * 224.93465 * 15 13 12 39 39 H 1.09003 * 111.00117 * 153.48952 * 16 4 2 40 40 H 1.08999 * 111.00919 * 277.33654 * 16 4 2 41 41 H 1.09003 * 110.36744 * 81.82357 * 17 16 4 42 42 H 1.08999 * 110.36542 * 204.14907 * 17 16 4 43 43 H 0.96997 * 119.99548 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7495 -1.2429 5 1 1.3039 -1.4436 -1.6202 6 7 2.4554 0.1962 -2.2875 7 6 2.5053 -0.2023 -3.5741 8 8 2.2190 -1.3439 -3.8669 9 6 2.9180 0.7703 -4.6487 10 6 4.2931 1.3682 -4.3446 11 6 1.8566 1.8829 -4.8301 12 7 1.8281 2.1668 -6.2697 13 6 2.4043 1.1773 -6.9739 14 8 2.5083 1.1540 -8.1821 15 6 2.9030 0.0964 -6.0404 16 6 3.2869 -1.5176 -0.6960 17 6 2.8162 -1.8831 0.7339 18 7 2.0355 -0.7163 1.1838 19 6 1.8130 -0.3595 2.4871 20 1 1.2244 0.5172 2.7139 21 6 2.3440 -1.1244 3.5165 22 7 3.0610 -2.1931 3.2400 23 14 2.0412 -0.6372 5.2942 24 1 0.8003 -1.2912 5.7821 25 1 3.1902 -1.0707 6.1290 26 1 1.8920 0.8375 5.3848 27 1 -0.3633 -1.0275 0.0197 28 1 -0.3633 0.5306 0.8801 29 1 -0.3634 0.4968 -0.8995 30 1 2.6846 1.1092 -2.0534 31 1 4.5387 2.1164 -5.0982 32 1 4.2762 1.8359 -3.3601 33 1 5.0439 0.5782 -4.3588 34 1 2.1475 2.7750 -4.2755 35 1 0.8801 1.5330 -4.4953 36 1 1.4433 2.9658 -6.6625 37 1 2.2227 -0.7552 -6.0446 38 1 3.9078 -0.2178 -6.3229 39 1 3.4811 -2.4143 -1.2846 40 1 4.1664 -0.8744 -0.6654 41 1 2.1880 -2.7737 0.7104 42 1 3.6744 -2.0402 1.3872 43 1 3.4324 -2.7273 3.9593 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088766079.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:02:42 Heat of formation + Delta-G solvation = -48.325858 kcal Electronic energy + Delta-G solvation = -24591.643530 eV Core-core repulsion = 21058.228702 eV Total energy + Delta-G solvation = -3533.414828 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.20639 -39.42469 -37.73497 -36.57797 -34.20033 -33.02540 -31.95228 -30.44103 -28.96349 -28.33479 -26.80492 -25.08055 -24.05839 -22.81768 -20.89015 -20.36004 -20.17295 -19.30694 -17.77810 -16.96364 -16.81236 -16.10860 -15.72216 -15.17569 -14.93976 -14.80860 -14.39341 -14.05914 -13.91403 -13.66611 -13.51173 -13.09560 -12.85904 -12.73201 -12.45207 -12.19729 -12.05817 -11.65822 -11.53532 -11.42028 -11.20297 -10.91683 -10.88751 -10.62440 -10.48882 -10.18893 -10.14161 -9.85014 -9.73887 -9.59668 -9.47954 -8.78016 -8.69117 -6.93834 -5.71006 -3.14162 2.33331 2.51882 3.01801 3.12466 3.35691 3.40819 3.42794 3.88233 4.05388 4.34887 4.43050 4.52617 4.76922 5.01995 5.13682 5.20194 5.29413 5.35746 5.41145 5.45937 5.47183 5.56402 5.66887 5.74148 5.78121 6.04040 6.16830 6.22469 6.26286 6.43503 6.45623 6.51855 6.64328 6.65386 6.78768 7.01762 7.45316 7.56298 7.57264 7.79578 7.94712 8.21476 8.29685 9.14825 9.75594 10.38946 11.32265 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.037126 B = 0.003255 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.997616 B = 8600.225615 C = 8818.667365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.155 3.845 3 H 0.036 0.964 4 C 0.134 3.866 5 H 0.093 0.907 6 N -0.709 5.709 7 C 0.529 3.471 8 O -0.533 6.533 9 C -0.096 4.096 10 C -0.138 4.138 11 C 0.115 3.885 12 N -0.731 5.731 13 C 0.524 3.476 14 O -0.535 6.535 15 C -0.139 4.139 16 C -0.152 4.152 17 C 0.153 3.847 18 N -0.595 5.595 19 C -0.222 4.222 20 H 0.078 0.922 21 C -0.009 4.009 22 N -0.920 5.920 23 Si 0.914 3.086 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.281 1.281 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.038 0.962 30 H 0.398 0.602 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.412 0.588 37 H 0.124 0.876 38 H 0.108 0.892 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.014 0.986 42 H 0.109 0.891 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.077 9.447 -13.916 16.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.047 3.953 3 H 0.054 0.946 4 C 0.029 3.971 5 H 0.111 0.889 6 N -0.359 5.359 7 C 0.313 3.687 8 O -0.409 6.409 9 C -0.100 4.100 10 C -0.195 4.195 11 C -0.011 4.011 12 N -0.387 5.387 13 C 0.310 3.690 14 O -0.411 6.411 15 C -0.179 4.179 16 C -0.192 4.192 17 C 0.028 3.972 18 N -0.321 5.321 19 C -0.350 4.350 20 H 0.095 0.905 21 C -0.205 4.205 22 N -0.568 5.568 23 Si 0.745 3.255 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.207 1.207 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.057 0.943 30 H 0.233 0.767 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.109 0.891 35 H 0.098 0.902 36 H 0.250 0.750 37 H 0.142 0.858 38 H 0.126 0.874 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.032 0.968 42 H 0.127 0.873 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.035 8.415 -14.459 16.730 hybrid contribution -0.366 1.010 1.043 1.497 sum -0.330 9.425 -13.416 16.399 Atomic orbital electron populations 1.22241 0.97853 1.01503 0.99914 1.21044 0.92554 0.94773 0.86924 0.94611 1.22211 0.97770 0.90767 0.86325 0.88862 1.46052 1.68301 1.15174 1.06351 1.19856 0.77530 0.88201 0.83140 1.90718 1.48633 1.19542 1.81992 1.21779 0.97711 0.95544 0.94977 1.21843 0.93503 1.01523 1.02673 1.22154 0.98984 0.98171 0.81749 1.46183 1.61269 1.23401 1.07843 1.20898 0.76696 0.83460 0.87903 1.90762 1.58068 1.78807 1.13492 1.22390 1.05647 0.98575 0.91298 1.23393 0.96673 0.99334 0.99799 1.21954 0.97442 0.88339 0.89492 1.44564 1.59274 1.28175 1.00048 1.19013 1.27391 1.08121 0.80489 0.90462 1.24791 1.00317 0.97337 0.98072 1.69794 1.39082 1.17698 1.30269 0.86085 0.77275 0.77715 0.84465 1.21633 1.21662 1.20712 0.92895 0.92692 0.94332 0.76726 0.91241 0.91062 0.90920 0.89100 0.90240 0.74952 0.85826 0.87374 0.91953 0.91941 0.96778 0.87305 0.93650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.66 9.15 37.16 0.34 -2.32 16 2 C 0.16 2.85 3.49 -66.79 -0.23 2.62 16 3 H 0.04 0.63 7.70 -51.93 -0.40 0.23 16 4 C 0.13 2.19 2.79 -66.10 -0.18 2.00 16 5 H 0.09 1.67 7.33 -51.93 -0.38 1.29 16 6 N -0.71 -8.62 5.08 -52.03 -0.26 -8.88 16 7 C 0.53 6.48 6.49 -10.99 -0.07 6.41 16 8 O -0.53 -8.69 15.19 5.55 0.08 -8.60 16 9 C -0.10 -0.84 0.86 -153.84 -0.13 -0.97 16 10 C -0.14 -0.96 8.40 37.16 0.31 -0.65 16 11 C 0.11 0.77 6.90 -2.93 -0.02 0.75 16 12 N -0.73 -5.69 6.24 -59.01 -0.37 -6.06 16 13 C 0.52 5.82 8.43 -10.86 -0.09 5.73 16 14 O -0.53 -8.08 18.03 5.55 0.10 -7.98 16 15 C -0.14 -1.40 5.76 -26.74 -0.15 -1.56 16 16 C -0.15 -2.80 6.77 -24.58 -0.17 -2.97 16 17 C 0.15 3.55 5.89 -2.53 -0.01 3.53 16 18 N -0.60 -14.06 3.14 -162.35 -0.51 -14.57 16 19 C -0.22 -5.80 9.91 -15.06 -0.15 -5.94 16 20 H 0.08 1.95 7.83 -52.49 -0.41 1.53 16 21 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 22 N -0.92 -25.88 10.09 55.49 0.56 -25.32 16 23 Si 0.91 21.26 29.55 -169.99 -5.02 16.24 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.05 0.98 8.06 -51.93 -0.42 0.56 16 29 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.40 3.81 7.58 -40.82 -0.31 3.50 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.42 7.38 -51.93 -0.38 0.04 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.09 0.39 7.91 -51.93 -0.41 -0.02 16 35 H 0.08 0.56 7.89 -51.93 -0.41 0.15 16 36 H 0.41 2.48 8.96 -40.82 -0.37 2.12 16 37 H 0.12 1.43 6.97 -51.93 -0.36 1.07 16 38 H 0.11 1.01 7.91 -51.93 -0.41 0.60 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.11 2.86 5.88 -51.93 -0.31 2.55 16 43 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 345.67 15.07 5.21 5.21 Total: -1.00 -32.59 345.67 -7.53 -40.12 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -6.66 Total: 3.57 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: -0.66 Total: 6.28 kcal Atomic # 7 Polarization: -54.26 SS G_CDS: -0.58 Total: -54.84 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: 0.18 Total: -16.58 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.59 -7.53 -40.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088766079.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.205 kcal (2) G-P(sol) polarization free energy of solvation -32.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds