Wall clock time and date at job start Tue Mar 31 2020 04:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.99585 * 2 1 4 4 C 1.54329 * 109.87653 * 238.91004 * 2 1 3 5 5 H 1.08999 * 110.72240 * 336.92528 * 4 2 1 6 6 N 1.46496 * 110.71935 * 100.02878 * 4 2 1 7 7 C 1.34778 * 119.99894 * 202.55873 * 6 4 2 8 8 O 1.21283 * 119.99877 * 359.97438 * 7 6 4 9 9 C 1.50700 * 120.00175 * 180.02562 * 7 6 4 10 10 C 1.52998 * 110.88892 * 56.18248 * 9 7 6 11 11 C 1.54831 * 111.07389 * 292.23883 * 9 7 6 12 12 N 1.46765 * 105.49704 * 216.48709 * 11 9 7 13 13 C 1.34418 * 111.29577 * 17.03926 * 12 11 9 14 14 O 1.21284 * 124.94191 * 179.55193 * 13 12 11 15 15 C 1.51281 * 110.11952 * 359.59413 * 13 12 11 16 16 C 1.55156 * 103.09661 * 218.47341 * 4 2 1 17 17 C 1.54914 * 101.58347 * 35.41694 * 16 4 2 18 18 N 1.47311 * 110.06459 * 121.17792 * 2 1 3 19 19 C 1.36939 * 125.61465 * 298.32007 * 18 2 1 20 20 H 1.07998 * 120.00078 * 359.79827 * 19 18 2 21 21 C 1.38813 * 120.00031 * 179.80274 * 19 18 2 22 22 N 1.31627 * 119.99824 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00190 * 179.97438 * 21 19 18 24 24 H 1.48510 * 109.46916 * 89.99965 * 23 21 19 25 25 H 1.48493 * 109.47476 * 209.99722 * 23 21 19 26 26 H 1.48499 * 109.47198 * 330.00341 * 23 21 19 27 27 H 1.09005 * 109.46974 * 181.09811 * 1 2 3 28 28 H 1.09001 * 109.46912 * 301.08732 * 1 2 3 29 29 H 1.08992 * 109.47495 * 61.09002 * 1 2 3 30 30 H 0.96996 * 120.00357 * 22.55048 * 6 4 2 31 31 H 1.08994 * 109.47102 * 183.81056 * 10 9 7 32 32 H 1.09001 * 109.46978 * 303.81670 * 10 9 7 33 33 H 1.09003 * 109.46690 * 63.81520 * 10 9 7 34 34 H 1.09001 * 110.21730 * 97.49592 * 11 9 7 35 35 H 1.08998 * 110.33453 * 335.54498 * 11 9 7 36 36 H 0.96997 * 124.35231 * 197.05812 * 12 11 9 37 37 H 1.09002 * 110.48898 * 102.42432 * 15 13 12 38 38 H 1.08998 * 110.48664 * 224.93465 * 15 13 12 39 39 H 1.09003 * 111.00117 * 153.48952 * 16 4 2 40 40 H 1.08999 * 111.00919 * 277.33654 * 16 4 2 41 41 H 1.09003 * 110.36744 * 81.82357 * 17 16 4 42 42 H 1.08999 * 110.36542 * 204.14907 * 17 16 4 43 43 H 0.96997 * 119.99548 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7495 -1.2429 5 1 1.3039 -1.4436 -1.6202 6 7 2.4554 0.1962 -2.2875 7 6 2.5053 -0.2023 -3.5741 8 8 2.2190 -1.3439 -3.8669 9 6 2.9180 0.7703 -4.6487 10 6 4.2931 1.3682 -4.3446 11 6 1.8566 1.8829 -4.8301 12 7 1.8281 2.1668 -6.2697 13 6 2.4043 1.1773 -6.9739 14 8 2.5083 1.1540 -8.1821 15 6 2.9030 0.0964 -6.0404 16 6 3.2869 -1.5176 -0.6960 17 6 2.8162 -1.8831 0.7339 18 7 2.0355 -0.7163 1.1838 19 6 1.8130 -0.3595 2.4871 20 1 1.2244 0.5172 2.7139 21 6 2.3440 -1.1244 3.5165 22 7 3.0610 -2.1931 3.2400 23 14 2.0412 -0.6372 5.2942 24 1 0.8003 -1.2912 5.7821 25 1 3.1902 -1.0707 6.1290 26 1 1.8920 0.8375 5.3848 27 1 -0.3633 -1.0275 0.0197 28 1 -0.3633 0.5306 0.8801 29 1 -0.3634 0.4968 -0.8995 30 1 2.6846 1.1092 -2.0534 31 1 4.5387 2.1164 -5.0982 32 1 4.2762 1.8359 -3.3601 33 1 5.0439 0.5782 -4.3588 34 1 2.1475 2.7750 -4.2755 35 1 0.8801 1.5330 -4.4953 36 1 1.4433 2.9658 -6.6625 37 1 2.2227 -0.7552 -6.0446 38 1 3.9078 -0.2178 -6.3229 39 1 3.4811 -2.4143 -1.2846 40 1 4.1664 -0.8744 -0.6654 41 1 2.1880 -2.7737 0.7104 42 1 3.6744 -2.0402 1.3872 43 1 3.4324 -2.7273 3.9593 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088766079.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:02:41 Heat of formation + Delta-G solvation = -73.064945 kcal Electronic energy + Delta-G solvation = -24592.716297 eV Core-core repulsion = 21058.228702 eV Total energy + Delta-G solvation = -3534.487595 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.06735 -40.53387 -39.16281 -37.51916 -35.62105 -34.09170 -33.36985 -32.00251 -30.49246 -29.29716 -27.43202 -26.55240 -25.79561 -23.85136 -22.00947 -21.66095 -21.49848 -20.48297 -18.66896 -18.63410 -17.75960 -17.38096 -16.70028 -16.59112 -16.04507 -15.89740 -15.70529 -15.41923 -15.07281 -14.77636 -14.46230 -14.27930 -14.00858 -13.92624 -13.64083 -13.34943 -13.20029 -13.08960 -12.88926 -12.74173 -12.57179 -12.29975 -12.16542 -12.12946 -12.04950 -11.94321 -11.53694 -11.40436 -11.09907 -10.79730 -10.69876 -10.17134 -10.00015 -8.86311 -7.71953 -5.16464 1.47114 1.50670 1.51683 1.55834 1.60064 2.04149 2.37502 2.54424 3.15757 3.26995 3.39160 3.59641 3.71141 3.78571 3.90190 4.00382 4.03998 4.26802 4.53146 4.55363 4.58902 4.65176 4.67038 4.72194 4.79685 4.84547 4.88300 4.95426 5.00103 5.10316 5.17993 5.27143 5.41189 5.54068 5.64224 5.66580 5.75808 5.84311 5.95282 6.34216 6.57592 7.14479 7.18106 7.24869 7.82782 8.45729 9.29785 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.037126 B = 0.003255 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.997616 B = 8600.225615 C = 8818.667365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.151 3.849 3 H 0.060 0.940 4 C 0.153 3.847 5 H 0.079 0.921 6 N -0.695 5.695 7 C 0.533 3.467 8 O -0.575 6.575 9 C -0.084 4.084 10 C -0.137 4.137 11 C 0.115 3.885 12 N -0.713 5.713 13 C 0.522 3.478 14 O -0.582 6.582 15 C -0.140 4.140 16 C -0.138 4.138 17 C 0.157 3.843 18 N -0.615 5.615 19 C -0.223 4.223 20 H 0.087 0.913 21 C -0.070 4.070 22 N -0.951 5.951 23 Si 0.975 3.025 24 H -0.293 1.293 25 H -0.298 1.298 26 H -0.265 1.265 27 H 0.031 0.969 28 H 0.046 0.954 29 H 0.076 0.924 30 H 0.416 0.584 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.064 0.936 34 H 0.131 0.869 35 H 0.082 0.918 36 H 0.423 0.577 37 H 0.106 0.894 38 H 0.112 0.888 39 H 0.063 0.937 40 H 0.074 0.926 41 H -0.019 1.019 42 H 0.076 0.924 43 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.241 12.549 -14.403 19.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.044 3.956 3 H 0.077 0.923 4 C 0.047 3.953 5 H 0.097 0.903 6 N -0.346 5.346 7 C 0.319 3.681 8 O -0.453 6.453 9 C -0.088 4.088 10 C -0.194 4.194 11 C -0.009 4.009 12 N -0.369 5.369 13 C 0.309 3.691 14 O -0.462 6.462 15 C -0.181 4.181 16 C -0.177 4.177 17 C 0.031 3.969 18 N -0.340 5.340 19 C -0.352 4.352 20 H 0.105 0.895 21 C -0.262 4.262 22 N -0.602 5.602 23 Si 0.804 3.196 24 H -0.220 1.220 25 H -0.225 1.225 26 H -0.190 1.190 27 H 0.050 0.950 28 H 0.065 0.935 29 H 0.094 0.906 30 H 0.254 0.746 31 H 0.101 0.899 32 H 0.108 0.892 33 H 0.083 0.917 34 H 0.149 0.851 35 H 0.101 0.899 36 H 0.264 0.736 37 H 0.124 0.876 38 H 0.130 0.870 39 H 0.081 0.919 40 H 0.092 0.908 41 H -0.001 1.001 42 H 0.094 0.906 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -0.309 11.608 -14.946 18.927 hybrid contribution -0.307 0.036 1.161 1.202 sum -0.616 11.645 -13.785 18.055 Atomic orbital electron populations 1.22139 0.96607 1.00578 1.01406 1.21279 0.93386 0.95312 0.85599 0.92280 1.21716 0.96088 0.90888 0.86642 0.90304 1.45771 1.68083 1.15290 1.05437 1.20400 0.76186 0.88122 0.83413 1.90721 1.50291 1.21726 1.82600 1.21680 0.99566 0.95114 0.92399 1.21893 0.91733 1.01595 1.04193 1.22353 0.98465 0.98948 0.81134 1.46112 1.59713 1.22846 1.08200 1.20989 0.76677 0.84123 0.87304 1.90739 1.60189 1.79860 1.15429 1.22353 1.05456 0.97999 0.92245 1.23184 0.97909 0.99993 0.96661 1.21659 0.95670 0.87717 0.91861 1.44811 1.59765 1.28509 1.00921 1.19398 1.26175 1.07862 0.81788 0.89532 1.25582 1.01024 0.97795 1.01795 1.70050 1.40580 1.18911 1.30632 0.85114 0.76338 0.78095 0.80006 1.22009 1.22519 1.18980 0.94971 0.93492 0.90561 0.74557 0.89874 0.89185 0.91685 0.85125 0.89947 0.73615 0.87594 0.86992 0.91873 0.90768 1.00122 0.90641 0.94583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.73 9.15 71.98 0.66 -4.07 16 2 C 0.15 5.21 3.49 45.29 0.16 5.37 16 3 H 0.06 1.82 7.70 -2.39 -0.02 1.80 16 4 C 0.15 4.72 2.79 46.18 0.13 4.85 16 5 H 0.08 2.74 7.33 -2.39 -0.02 2.72 16 6 N -0.69 -14.54 5.08 -436.92 -2.22 -16.76 16 7 C 0.53 11.71 6.49 87.66 0.57 12.28 16 8 O -0.57 -18.16 15.19 -3.04 -0.05 -18.21 16 9 C -0.08 -1.19 0.86 -51.75 -0.04 -1.24 16 10 C -0.14 -1.37 8.40 71.98 0.60 -0.77 16 11 C 0.12 1.05 6.90 86.95 0.60 1.65 16 12 N -0.71 -8.88 6.24 -459.20 -2.87 -11.74 16 13 C 0.52 10.81 8.43 87.90 0.74 11.55 16 14 O -0.58 -17.35 18.03 -3.04 -0.05 -17.41 16 15 C -0.14 -2.65 5.76 30.59 0.18 -2.47 16 16 C -0.14 -5.00 6.77 31.99 0.22 -4.78 16 17 C 0.16 7.48 5.89 86.86 0.51 7.99 16 18 N -0.61 -28.90 3.14 -667.55 -2.10 -30.99 16 19 C -0.22 -11.58 9.91 84.03 0.83 -10.75 16 20 H 0.09 4.23 7.83 -2.91 -0.02 4.21 16 21 C -0.07 -3.79 5.49 84.86 0.47 -3.33 16 22 N -0.95 -55.31 10.09 21.65 0.22 -55.10 16 23 Si 0.98 43.96 29.55 68.60 2.03 45.99 16 24 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 25 H -0.30 -13.71 7.11 99.48 0.71 -13.00 16 26 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 27 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 28 H 0.05 1.56 8.06 -2.39 -0.02 1.54 16 29 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.42 5.90 7.58 -92.71 -0.70 5.20 16 31 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.09 0.60 7.38 -2.39 -0.02 0.58 16 33 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.13 0.29 7.91 -2.39 -0.02 0.27 16 35 H 0.08 0.80 7.89 -2.39 -0.02 0.78 16 36 H 0.42 3.70 8.96 -92.71 -0.83 2.87 16 37 H 0.11 2.44 6.97 -2.39 -0.02 2.42 16 38 H 0.11 1.99 7.91 -2.39 -0.02 1.97 16 39 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 41 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 42 H 0.08 4.14 5.88 -2.39 -0.01 4.12 16 43 H 0.24 13.96 8.31 -92.71 -0.77 13.18 16 Total: -1.00 -74.16 345.67 0.08 -74.08 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -0.50 Total: 13.85 kcal Atomic # 6 Polarization: 10.67 SS G_CDS: 5.62 Total: 16.29 kcal Atomic # 7 Polarization: -107.63 SS G_CDS: -6.96 Total: -114.59 kcal Atomic # 8 Polarization: -35.52 SS G_CDS: -0.10 Total: -35.62 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -74.16 0.08 -74.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088766079.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.014 kcal (2) G-P(sol) polarization free energy of solvation -74.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds