Wall clock time and date at job start Tue Mar 31 2020 04:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.87738 * 2 1 4 4 C 1.54330 * 110.01078 * 238.90106 * 2 1 3 5 5 H 1.08992 * 110.71833 * 336.68238 * 4 2 1 6 6 N 1.46502 * 110.71621 * 99.95656 * 4 2 1 7 7 C 1.34780 * 119.99515 * 205.00217 * 6 4 2 8 8 O 1.21284 * 120.00163 * 359.97438 * 7 6 4 9 9 C 1.50700 * 119.99854 * 179.97438 * 7 6 4 10 10 H 1.09004 * 110.43342 * 59.30045 * 9 7 6 11 11 C 1.54631 * 110.48585 * 181.83586 * 9 7 6 12 12 C 1.54692 * 101.66755 * 143.39428 * 11 9 7 13 13 N 1.46766 * 105.53484 * 334.74286 * 12 11 9 14 14 C 1.46496 * 124.35101 * 196.89799 * 13 12 11 15 15 C 1.34424 * 111.30088 * 16.92345 * 13 12 11 16 16 O 1.21272 * 124.94355 * 179.55926 * 15 13 12 17 17 C 1.55158 * 102.94112 * 218.31949 * 4 2 1 18 18 C 1.54911 * 101.58363 * 35.50252 * 17 4 2 19 19 N 1.47025 * 109.88283 * 121.01792 * 2 1 3 20 20 C 1.36936 * 125.64594 * 298.47584 * 19 2 1 21 21 H 1.07999 * 120.00473 * 341.49174 * 20 19 2 22 22 C 1.38814 * 120.00079 * 161.49471 * 20 19 2 23 23 N 1.31617 * 120.00341 * 157.62010 * 22 20 19 24 24 Si 1.86806 * 119.99614 * 337.62461 * 22 20 19 25 25 H 1.48501 * 109.47169 * 84.54281 * 24 22 20 26 26 H 1.48505 * 109.46658 * 204.53567 * 24 22 20 27 27 H 1.48495 * 109.47317 * 324.53746 * 24 22 20 28 28 H 1.08997 * 109.47194 * 300.70003 * 1 2 3 29 29 H 1.09000 * 109.47333 * 60.70006 * 1 2 3 30 30 H 1.09003 * 109.47384 * 180.70001 * 1 2 3 31 31 H 0.96994 * 120.00430 * 25.00390 * 6 4 2 32 32 H 1.08997 * 110.97040 * 261.59822 * 11 9 7 33 33 H 1.09000 * 110.96832 * 25.36243 * 11 9 7 34 34 H 1.08995 * 110.29476 * 215.68108 * 12 11 9 35 35 H 1.09002 * 110.21165 * 93.75786 * 12 11 9 36 36 H 1.08999 * 109.46791 * 180.02562 * 14 13 12 37 37 H 1.08996 * 109.47450 * 300.05403 * 14 13 12 38 38 H 1.09003 * 109.46601 * 60.05071 * 14 13 12 39 39 H 1.09007 * 111.00338 * 277.42700 * 17 4 2 40 40 H 1.09000 * 111.03753 * 153.59262 * 17 4 2 41 41 H 1.09002 * 110.36462 * 204.15251 * 18 17 4 42 42 H 1.08997 * 110.36776 * 81.82822 * 18 17 4 43 43 H 0.96997 * 119.99854 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0581 -0.7490 -1.2417 5 1 1.3104 -1.4471 -1.6178 6 7 2.4580 0.1970 -2.2864 7 6 2.4632 -0.1880 -3.5780 8 8 2.1372 -1.3177 -3.8754 9 6 2.8741 0.7853 -4.6527 10 1 3.8919 1.1353 -4.4803 11 6 2.7561 0.1313 -6.0489 12 6 2.2676 1.3194 -6.9107 13 7 1.5873 2.2270 -5.9793 14 6 0.6704 3.2945 -6.3866 15 6 1.9141 1.9533 -4.7044 16 8 1.5000 2.5554 -3.7366 17 6 3.2918 -1.5108 -0.6894 18 6 2.8176 -1.8764 0.7394 19 7 2.0300 -0.7125 1.1849 20 6 1.8025 -0.3539 2.4868 21 1 1.4813 0.6500 2.7222 22 6 1.9847 -1.2807 3.5040 23 7 2.2032 -0.8716 4.7357 24 14 1.9198 -3.1087 3.1246 25 1 3.2520 -3.5637 2.6517 26 1 1.5488 -3.8562 4.3529 27 1 0.9073 -3.3592 2.0677 28 1 -0.3633 0.5246 0.8836 29 1 -0.3634 0.5029 -0.8962 30 1 -0.3634 -1.0276 0.0126 31 1 2.7191 1.1004 -2.0485 32 1 3.7248 -0.2308 -6.3932 33 1 2.0206 -0.6732 -6.0419 34 1 1.5719 0.9718 -7.6743 35 1 3.1162 1.8220 -7.3748 36 1 0.3060 3.8174 -5.5024 37 1 1.1952 3.9969 -7.0341 38 1 -0.1726 2.8630 -6.9263 39 1 4.1682 -0.8635 -0.6565 40 1 3.4927 -2.4074 -1.2757 41 1 3.6742 -2.0286 1.3960 42 1 2.1936 -2.7698 0.7150 43 1 2.3309 -1.5193 5.4464 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088804306.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:03:25 Heat of formation + Delta-G solvation = -35.602688 kcal Electronic energy + Delta-G solvation = -24693.894523 eV Core-core repulsion = 21161.031414 eV Total energy + Delta-G solvation = -3532.863109 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.16011 -39.33214 -37.79884 -36.69795 -34.09725 -33.16782 -32.03019 -30.64254 -29.51921 -28.13976 -27.11499 -24.92831 -23.88472 -22.70242 -21.22709 -20.59495 -20.03129 -19.29796 -17.55857 -17.15535 -16.84679 -16.54966 -15.96531 -15.43322 -14.97901 -14.68516 -14.36196 -14.11842 -13.92928 -13.63452 -13.29656 -13.15109 -12.90759 -12.82428 -12.73878 -12.50163 -12.14239 -12.07720 -11.79326 -11.51112 -11.44333 -11.14600 -10.85218 -10.71525 -10.42493 -10.24063 -10.07001 -9.94667 -9.80431 -9.39750 -9.11564 -8.79490 -8.61489 -7.03896 -5.91006 -3.21473 2.10127 2.47049 2.78586 3.23389 3.38679 3.52403 3.55393 3.90177 4.05666 4.50580 4.56500 4.58816 4.80943 4.89948 4.92722 5.00625 5.11417 5.14430 5.22905 5.27535 5.37318 5.38424 5.46636 5.64761 5.73674 5.91023 5.98873 6.08147 6.13594 6.22900 6.36986 6.46822 6.52050 6.65661 6.66092 6.77451 6.87422 7.04384 7.61820 7.74511 7.78945 8.24550 8.35168 8.86767 9.72366 10.20240 11.25073 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.031443 B = 0.003737 C = 0.003497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.284073 B = 7491.687644 C = 8005.348855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.156 3.844 3 H 0.048 0.952 4 C 0.134 3.866 5 H 0.097 0.903 6 N -0.700 5.700 7 C 0.531 3.469 8 O -0.539 6.539 9 C -0.150 4.150 10 H 0.135 0.865 11 C -0.116 4.116 12 C 0.101 3.899 13 N -0.623 5.623 14 C 0.093 3.907 15 C 0.526 3.474 16 O -0.512 6.512 17 C -0.140 4.140 18 C 0.112 3.888 19 N -0.602 5.602 20 C -0.236 4.236 21 H 0.093 0.907 22 C 0.022 3.978 23 N -0.909 5.909 24 Si 0.881 3.119 25 H -0.285 1.285 26 H -0.303 1.303 27 H -0.276 1.276 28 H 0.061 0.939 29 H 0.041 0.959 30 H 0.049 0.951 31 H 0.407 0.593 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.027 0.973 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.025 5.466 -26.432 27.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.048 3.952 3 H 0.066 0.934 4 C 0.029 3.971 5 H 0.115 0.885 6 N -0.350 5.350 7 C 0.315 3.685 8 O -0.416 6.416 9 C -0.175 4.175 10 H 0.153 0.847 11 C -0.154 4.154 12 C -0.022 4.022 13 N -0.358 5.358 14 C -0.048 4.048 15 C 0.312 3.688 16 O -0.387 6.387 17 C -0.179 4.179 18 C -0.014 4.014 19 N -0.328 5.328 20 C -0.363 4.363 21 H 0.110 0.890 22 C -0.176 4.176 23 N -0.553 5.553 24 Si 0.711 3.289 25 H -0.212 1.212 26 H -0.231 1.231 27 H -0.202 1.202 28 H 0.080 0.920 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.242 0.758 32 H 0.115 0.885 33 H 0.120 0.880 34 H 0.101 0.899 35 H 0.093 0.907 36 H 0.103 0.897 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.045 0.955 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.506 5.049 -25.854 26.385 hybrid contribution 0.066 -0.613 -0.048 0.619 sum 1.571 4.435 -25.902 26.326 Atomic orbital electron populations 1.22178 0.97163 1.01357 1.00651 1.21084 0.92952 0.95352 0.85777 0.93425 1.22150 0.97043 0.91038 0.86890 0.88514 1.45981 1.66962 1.16390 1.05671 1.19654 0.77847 0.87772 0.83237 1.90697 1.48472 1.20320 1.82109 1.22186 1.02226 0.95878 0.97199 0.84721 1.22633 1.04533 0.97569 0.90642 1.22208 0.97216 0.90060 0.92686 1.48068 1.46288 1.34310 1.07114 1.21593 0.92312 0.89202 1.01707 1.20352 0.81219 0.84126 0.83096 1.90789 1.56031 1.54204 1.37660 1.23140 0.97607 1.00056 0.97133 1.21952 0.95208 0.91161 0.93051 1.44830 1.57393 1.29033 1.01512 1.18599 1.42223 0.96837 0.78655 0.88963 1.24980 1.00206 0.97622 0.94810 1.69836 1.50993 1.33913 1.00576 0.87008 0.78237 0.87519 0.76112 1.21206 1.23105 1.20188 0.91994 0.93963 0.93181 0.75763 0.88455 0.87987 0.89928 0.90729 0.89668 0.91904 0.91911 0.90898 0.91248 0.91933 0.95521 0.92742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 9.15 37.16 0.34 -2.70 16 2 C 0.16 3.17 3.47 -66.95 -0.23 2.94 16 3 H 0.05 0.97 7.72 -51.93 -0.40 0.57 16 4 C 0.13 2.38 2.85 -66.09 -0.19 2.19 16 5 H 0.10 1.84 7.27 -51.93 -0.38 1.46 16 6 N -0.70 -10.49 4.89 -52.03 -0.25 -10.75 16 7 C 0.53 7.48 7.14 -10.98 -0.08 7.40 16 8 O -0.54 -9.09 15.15 5.55 0.08 -9.01 16 9 C -0.15 -1.49 3.32 -91.78 -0.30 -1.79 16 10 H 0.14 1.00 8.14 -51.93 -0.42 0.58 16 11 C -0.12 -0.84 6.48 -24.98 -0.16 -1.00 16 12 C 0.10 0.56 7.35 -3.01 -0.02 0.54 16 13 N -0.62 -5.35 3.33 -180.16 -0.60 -5.95 16 14 C 0.09 0.62 11.14 59.84 0.67 1.29 16 15 C 0.53 6.10 7.44 -10.86 -0.08 6.02 16 16 O -0.51 -7.75 16.32 5.56 0.09 -7.66 16 17 C -0.14 -2.52 6.77 -24.58 -0.17 -2.69 16 18 C 0.11 2.50 4.69 -2.53 -0.01 2.48 16 19 N -0.60 -14.67 2.94 -162.57 -0.48 -15.15 16 20 C -0.24 -6.72 10.17 -15.06 -0.15 -6.87 16 21 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 22 C 0.02 0.65 5.43 -17.43 -0.09 0.56 16 23 N -0.91 -28.30 13.97 55.49 0.78 -27.52 16 24 Si 0.88 23.00 24.27 -169.99 -4.13 18.87 16 25 H -0.29 -7.15 6.49 56.52 0.37 -6.78 16 26 H -0.30 -8.01 7.11 56.52 0.40 -7.61 16 27 H -0.28 -7.16 6.66 56.52 0.38 -6.79 16 28 H 0.06 1.28 8.03 -51.93 -0.42 0.87 16 29 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.41 5.70 7.73 -40.82 -0.32 5.38 16 32 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.10 0.94 7.02 -51.93 -0.36 0.57 16 34 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.08 0.70 7.53 -51.93 -0.39 0.31 16 37 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.07 1.24 8.14 -51.92 -0.42 0.81 16 40 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.06 1.47 6.64 -51.93 -0.34 1.13 16 42 H 0.03 0.63 5.58 -51.93 -0.29 0.34 16 43 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 LS Contribution 341.83 15.07 5.15 5.15 Total: -1.00 -35.15 341.83 -6.59 -41.74 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -6.75 Total: 1.91 kcal Atomic # 6 Polarization: 8.86 SS G_CDS: -0.49 Total: 8.37 kcal Atomic # 7 Polarization: -58.81 SS G_CDS: -0.56 Total: -59.37 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: 0.17 Total: -16.67 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -4.13 Total: 18.87 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.15 -6.59 -41.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088804306.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.138 kcal (2) G-P(sol) polarization free energy of solvation -35.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds