Wall clock time and date at job start Tue Mar 31 2020 04:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08989 * 109.99859 * 2 1 4 4 C 1.54327 * 109.87971 * 238.90497 * 2 1 3 5 5 H 1.09006 * 110.71866 * 336.93045 * 4 2 1 6 6 N 1.46495 * 110.71822 * 100.02657 * 4 2 1 7 7 C 1.34773 * 120.00018 * 204.99720 * 6 4 2 8 8 O 1.21279 * 120.00262 * 0.02562 * 7 6 4 9 9 C 1.50707 * 120.00038 * 180.02562 * 7 6 4 10 10 C 1.52997 * 110.21615 * 275.70125 * 9 7 6 11 11 C 1.54477 * 110.31671 * 153.72195 * 9 7 6 12 12 C 1.54622 * 101.76679 * 266.37700 * 11 9 7 13 13 C 1.51283 * 104.19754 * 335.20504 * 12 11 9 14 14 O 1.21285 * 124.94419 * 196.27489 * 13 12 11 15 15 N 1.34419 * 110.11193 * 16.24932 * 13 12 11 16 16 C 1.55162 * 102.94175 * 218.39421 * 4 2 1 17 17 C 1.54908 * 101.58050 * 35.50287 * 16 4 2 18 18 N 1.47021 * 109.87838 * 121.10340 * 2 1 3 19 19 C 1.36945 * 125.64661 * 298.38402 * 18 2 1 20 20 H 1.07995 * 119.99893 * 0.02562 * 19 18 2 21 21 C 1.38808 * 119.99928 * 180.02562 * 19 18 2 22 22 N 1.31619 * 120.00035 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99753 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47366 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47231 * 119.99727 * 23 21 19 26 26 H 1.48504 * 109.46808 * 239.99579 * 23 21 19 27 27 H 1.08996 * 109.47351 * 181.09354 * 1 2 3 28 28 H 1.09001 * 109.47005 * 301.09406 * 1 2 3 29 29 H 1.09002 * 109.46812 * 61.09095 * 1 2 3 30 30 H 0.97003 * 120.00126 * 25.00093 * 6 4 2 31 31 H 1.09002 * 109.47153 * 180.47475 * 10 9 7 32 32 H 1.09001 * 109.46832 * 60.47666 * 10 9 7 33 33 H 1.09004 * 109.47261 * 300.47647 * 10 9 7 34 34 H 1.08999 * 110.97416 * 24.49900 * 11 9 7 35 35 H 1.09004 * 110.96734 * 148.26045 * 11 9 7 36 36 H 1.09005 * 110.48891 * 216.52487 * 12 11 9 37 37 H 1.08999 * 110.59839 * 93.94351 * 12 11 9 38 38 H 0.96995 * 124.34835 * 180.38773 * 15 13 12 39 39 H 1.08992 * 111.00127 * 153.57624 * 16 4 2 40 40 H 1.08999 * 110.99729 * 277.42450 * 16 4 2 41 41 H 1.08997 * 110.36298 * 204.15721 * 17 16 4 42 42 H 1.08994 * 110.46222 * 81.88100 * 17 16 4 43 43 H 0.97003 * 119.99588 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7495 -1.2428 5 1 1.3038 -1.4437 -1.6201 6 7 2.4554 0.1961 -2.2875 7 6 2.4581 -0.1883 -3.5793 8 8 2.1285 -1.3168 -3.8769 9 6 2.8707 0.7843 -4.6540 10 6 1.6818 1.6562 -5.0628 11 6 3.4240 0.0254 -5.8805 12 6 4.9419 0.0149 -5.5864 13 6 5.1535 1.2112 -4.6848 14 8 6.2277 1.7234 -4.4508 15 7 3.9776 1.6241 -4.1812 16 6 3.2876 -1.5144 -0.6924 17 6 2.8144 -1.8796 0.7367 18 7 2.0299 -0.7142 1.1838 19 6 1.8038 -0.3566 2.4863 20 1 1.2122 0.5185 2.7110 21 6 2.3350 -1.1188 3.5176 22 7 3.0556 -2.1856 3.2437 23 14 2.0259 -0.6313 5.2942 24 1 1.1922 0.5969 5.3326 25 1 1.3175 -1.7331 5.9938 26 1 3.3230 -0.3699 5.9685 27 1 -0.3634 -1.0274 0.0196 28 1 -0.3633 0.5307 0.8800 29 1 -0.3633 0.4968 -0.8996 30 1 2.7188 1.0988 -2.0495 31 1 1.9913 2.3486 -5.8457 32 1 1.3298 2.2190 -4.1983 33 1 0.8774 1.0221 -5.4357 34 1 3.0278 -0.9892 -5.9228 35 1 3.2090 0.5653 -6.8027 36 1 5.5102 0.1279 -6.5097 37 1 5.2270 -0.9040 -5.0743 38 1 3.8740 2.3797 -3.5820 39 1 3.4850 -2.4111 -1.2797 40 1 4.1654 -0.8690 -0.6605 41 1 3.6715 -2.0340 1.3921 42 1 2.1890 -2.7720 0.7146 43 1 3.4265 -2.7185 3.9644 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088839392.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:02:29 Heat of formation + Delta-G solvation = -46.482394 kcal Electronic energy + Delta-G solvation = -24903.670370 eV Core-core repulsion = 21370.335481 eV Total energy + Delta-G solvation = -3533.334889 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.28629 -39.26915 -37.77172 -36.49333 -34.20590 -32.20174 -31.44310 -31.12397 -30.41338 -28.65700 -25.58603 -24.78813 -24.04974 -22.75416 -20.98133 -20.40679 -20.16151 -19.66606 -18.08614 -16.98896 -16.84965 -16.06346 -15.56893 -15.06808 -14.83910 -14.48866 -14.21609 -14.00961 -13.94149 -13.59879 -13.47083 -12.91336 -12.84486 -12.76637 -12.58612 -12.19813 -12.04141 -11.63413 -11.44833 -11.35156 -11.19454 -10.90838 -10.89870 -10.67327 -10.58552 -10.29205 -10.10203 -10.08009 -9.80955 -9.62910 -9.18624 -8.76926 -8.67894 -6.92089 -5.69491 -3.12678 2.34700 2.44411 3.03587 3.14986 3.37015 3.42444 3.44977 3.94047 4.18813 4.37054 4.44541 4.62747 4.74949 4.99468 5.17415 5.21195 5.30089 5.37394 5.44607 5.48152 5.56577 5.59130 5.66034 5.73312 5.75280 6.05381 6.17629 6.23032 6.26961 6.41793 6.45721 6.53464 6.64479 6.69255 6.79789 7.02451 7.45983 7.56428 7.58699 7.81058 7.98105 8.18755 8.31105 9.16355 9.77331 10.40569 11.33913 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.024284 B = 0.003832 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.723130 B = 7304.723856 C = 7631.301068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.155 3.845 3 H 0.034 0.966 4 C 0.133 3.867 5 H 0.096 0.904 6 N -0.705 5.705 7 C 0.510 3.490 8 O -0.533 6.533 9 C 0.140 3.860 10 C -0.150 4.150 11 C -0.114 4.114 12 C -0.159 4.159 13 C 0.525 3.475 14 O -0.529 6.529 15 N -0.723 5.723 16 C -0.152 4.152 17 C 0.153 3.847 18 N -0.595 5.595 19 C -0.222 4.222 20 H 0.078 0.922 21 C -0.009 4.009 22 N -0.920 5.920 23 Si 0.914 3.086 24 H -0.280 1.280 25 H -0.290 1.290 26 H -0.290 1.290 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.037 0.963 30 H 0.396 0.604 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.110 0.890 35 H 0.091 0.909 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.411 0.589 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.109 0.891 42 H 0.015 0.985 43 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.972 6.662 -18.641 19.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.047 3.953 3 H 0.052 0.948 4 C 0.028 3.972 5 H 0.114 0.886 6 N -0.355 5.355 7 C 0.293 3.707 8 O -0.409 6.409 9 C 0.050 3.950 10 C -0.208 4.208 11 C -0.152 4.152 12 C -0.199 4.199 13 C 0.311 3.689 14 O -0.404 6.404 15 N -0.381 5.381 16 C -0.192 4.192 17 C 0.028 3.972 18 N -0.320 5.320 19 C -0.350 4.350 20 H 0.096 0.904 21 C -0.205 4.205 22 N -0.568 5.568 23 Si 0.745 3.255 24 H -0.205 1.205 25 H -0.217 1.217 26 H -0.217 1.217 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.230 0.770 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.128 0.872 35 H 0.110 0.890 36 H 0.124 0.876 37 H 0.126 0.874 38 H 0.251 0.749 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.127 0.873 42 H 0.033 0.967 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.570 5.929 -18.557 19.544 hybrid contribution -0.246 0.976 1.453 1.767 sum -1.817 6.905 -17.104 18.535 Atomic orbital electron populations 1.22239 0.97821 1.01482 0.99886 1.20992 0.92634 0.94725 0.86960 0.94814 1.22235 0.97772 0.90798 0.86363 0.88636 1.46043 1.67057 1.16246 1.06107 1.20580 0.78010 0.88381 0.83695 1.90708 1.48279 1.19931 1.82002 1.21269 0.88968 0.90831 0.93936 1.22055 0.96300 0.99681 1.02802 1.22659 0.93904 1.03190 0.95493 1.22411 0.97767 0.98489 1.01254 1.20907 0.83205 0.84558 0.80210 1.90779 1.26794 1.60794 1.62061 1.46344 1.07642 1.33360 1.50734 1.23392 0.96688 0.99279 0.99858 1.21950 0.97426 0.88403 0.89468 1.44487 1.59233 1.28206 1.00053 1.19063 1.27192 1.08278 0.80466 0.90398 1.24790 1.00261 0.97350 0.98091 1.69803 1.39041 1.17872 1.30113 0.86010 0.77380 0.77544 0.84607 1.20543 1.21723 1.21730 0.92866 0.92678 0.94400 0.76979 0.90512 0.91268 0.89966 0.87151 0.89019 0.87615 0.87401 0.74931 0.92017 0.92033 0.87299 0.96681 0.93698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 9.13 37.16 0.34 -2.42 16 2 C 0.16 3.01 3.48 -66.95 -0.23 2.77 16 3 H 0.03 0.64 7.71 -51.94 -0.40 0.24 16 4 C 0.13 2.31 2.85 -66.09 -0.19 2.12 16 5 H 0.10 1.77 7.25 -51.93 -0.38 1.40 16 6 N -0.71 -9.56 5.09 -52.03 -0.26 -9.83 16 7 C 0.51 6.59 6.75 -10.98 -0.07 6.51 16 8 O -0.53 -8.62 15.31 5.56 0.09 -8.54 16 9 C 0.14 1.26 1.12 -132.05 -0.15 1.11 16 10 C -0.15 -0.98 8.79 37.16 0.33 -0.65 16 11 C -0.11 -0.90 6.15 -25.10 -0.15 -1.05 16 12 C -0.16 -1.43 6.85 -26.74 -0.18 -1.61 16 13 C 0.52 6.20 8.43 -10.86 -0.09 6.10 16 14 O -0.53 -8.45 18.03 5.55 0.10 -8.35 16 15 N -0.72 -6.74 4.94 -47.68 -0.24 -6.98 16 16 C -0.15 -2.98 6.77 -24.58 -0.17 -3.14 16 17 C 0.15 3.67 5.89 -2.53 -0.01 3.65 16 18 N -0.59 -14.53 3.13 -162.58 -0.51 -15.04 16 19 C -0.22 -5.95 9.89 -15.06 -0.15 -6.10 16 20 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 21 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 22 N -0.92 -26.44 10.09 55.49 0.56 -25.88 16 23 Si 0.91 21.73 29.55 -169.99 -5.02 16.70 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.05 1.02 8.04 -51.93 -0.42 0.60 16 29 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.40 4.61 7.71 -40.82 -0.31 4.30 16 31 H 0.08 0.38 8.13 -51.93 -0.42 -0.04 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.11 0.98 6.90 -51.93 -0.36 0.62 16 35 H 0.09 0.50 7.91 -51.93 -0.41 0.08 16 36 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.41 3.30 8.77 -40.82 -0.36 2.94 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.11 2.96 5.87 -51.93 -0.30 2.65 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 346.75 15.07 5.23 5.23 Total: -1.00 -32.94 346.75 -7.61 -40.55 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -6.71 Total: 5.20 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: -0.83 Total: 6.95 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: -0.45 Total: -57.72 kcal Atomic # 8 Polarization: -17.08 SS G_CDS: 0.19 Total: -16.89 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.94 -7.61 -40.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088839392.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.937 kcal (2) G-P(sol) polarization free energy of solvation -32.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds