Wall clock time and date at job start Tue Mar 31 2020 04:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.99856 * 2 1 4 4 C 1.54323 * 109.87955 * 238.89840 * 2 1 3 5 5 H 1.09001 * 110.72380 * 336.93582 * 4 2 1 6 6 N 1.46501 * 110.71573 * 100.02803 * 4 2 1 7 7 C 1.34781 * 120.00067 * 202.55748 * 6 4 2 8 8 O 1.21282 * 119.99674 * 0.02562 * 7 6 4 9 9 C 1.50694 * 120.00214 * 179.97438 * 7 6 4 10 10 C 1.52998 * 109.47225 * 179.97438 * 9 7 6 11 11 H 1.09002 * 110.21925 * 304.52488 * 10 9 7 12 12 C 1.54474 * 110.32194 * 182.54678 * 10 9 7 13 13 C 1.54625 * 101.76763 * 215.54570 * 12 10 9 14 14 C 1.51286 * 104.19405 * 24.79834 * 13 12 10 15 15 O 1.21283 * 124.93955 * 163.70869 * 14 13 12 16 16 N 1.34417 * 110.11297 * 343.74897 * 14 13 12 17 17 C 1.55154 * 103.10478 * 218.47846 * 4 2 1 18 18 C 1.55124 * 101.48231 * 35.28401 * 17 4 2 19 19 N 1.47029 * 109.88020 * 121.09365 * 2 1 3 20 20 C 1.36930 * 125.64716 * 298.32081 * 19 2 1 21 21 H 1.07996 * 120.00219 * 359.97438 * 20 19 2 22 22 C 1.38817 * 119.99549 * 180.02562 * 20 19 2 23 23 N 1.31609 * 120.00138 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99776 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47101 * 89.99623 * 24 22 20 26 26 H 1.48498 * 109.47344 * 209.99743 * 24 22 20 27 27 H 1.48499 * 109.47247 * 329.99776 * 24 22 20 28 28 H 1.09002 * 109.47097 * 181.10103 * 1 2 3 29 29 H 1.09000 * 109.46674 * 301.09754 * 1 2 3 30 30 H 1.08995 * 109.46912 * 61.09643 * 1 2 3 31 31 H 0.97001 * 120.00152 * 22.56165 * 6 4 2 32 32 H 1.09004 * 109.47185 * 60.00110 * 9 7 6 33 33 H 1.08998 * 109.47434 * 300.00490 * 9 7 6 34 34 H 1.09001 * 110.97106 * 97.42660 * 12 10 9 35 35 H 1.09007 * 110.96855 * 333.66518 * 12 10 9 36 36 H 1.09001 * 110.48978 * 266.11806 * 13 12 10 37 37 H 1.09000 * 110.49031 * 143.47236 * 13 12 10 38 38 H 0.97007 * 124.34778 * 179.57580 * 16 14 13 39 39 H 1.08998 * 111.00743 * 153.48925 * 17 4 2 40 40 H 1.08998 * 111.00409 * 277.34889 * 17 4 2 41 41 H 1.09004 * 110.42047 * 204.29646 * 18 17 4 42 42 H 1.09006 * 110.30176 * 82.09391 * 18 17 4 43 43 H 0.97007 * 120.00175 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7497 -1.2427 5 1 1.3039 -1.4438 -1.6200 6 7 2.4554 0.1959 -2.2875 7 6 2.5055 -0.2028 -3.5740 8 8 2.2184 -1.3442 -3.8667 9 6 2.9170 0.7700 -4.6489 10 6 2.8913 0.0687 -6.0084 11 1 3.5185 -0.8224 -5.9846 12 6 3.3715 1.0308 -7.1175 13 6 2.4775 0.6117 -8.3074 14 6 1.2564 0.0001 -7.6566 15 8 0.1984 -0.1997 -8.2148 16 7 1.5144 -0.2888 -6.3694 17 6 3.2869 -1.5179 -0.6958 18 6 2.8145 -1.8794 0.7368 19 7 2.0300 -0.7141 1.1840 20 6 1.8050 -0.3555 2.4862 21 1 1.2150 0.5207 2.7109 22 6 2.3362 -1.1178 3.5176 23 7 3.0556 -2.1853 3.2439 24 14 2.0298 -0.6283 5.2942 25 1 0.7895 -1.2839 5.7814 26 1 3.1786 -1.0582 6.1313 27 1 1.8776 0.8462 5.3822 28 1 -0.3633 -1.0275 0.0197 29 1 -0.3633 0.5308 0.8800 30 1 -0.3633 0.4967 -0.8996 31 1 2.6847 1.1089 -2.0534 32 1 3.9253 1.1309 -4.4456 33 1 2.2252 1.6123 -4.6609 34 1 4.4251 0.8688 -7.3451 35 1 3.1892 2.0689 -6.8392 36 1 2.9884 -0.1247 -8.9277 37 1 2.1979 1.4828 -8.9000 38 1 0.8729 -0.6828 -5.7577 39 1 3.4810 -2.4146 -1.2842 40 1 4.1663 -0.8746 -0.6651 41 1 3.6716 -2.0338 1.3924 42 1 2.1891 -2.7719 0.7149 43 1 3.4265 -2.7182 3.9646 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088914697.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:02:51 Heat of formation + Delta-G solvation = -79.503118 kcal Electronic energy + Delta-G solvation = -24037.865984 eV Core-core repulsion = 20503.099209 eV Total energy + Delta-G solvation = -3534.766775 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.56378 -40.64558 -39.17757 -37.52786 -35.55961 -33.87878 -32.20707 -32.08501 -31.91720 -30.33226 -27.06868 -25.95665 -25.43415 -22.52115 -22.02751 -21.55808 -21.49466 -20.97440 -18.71998 -18.28451 -17.90599 -17.53162 -17.20140 -16.63891 -16.12293 -15.83342 -15.60107 -15.44656 -14.88203 -14.70855 -14.36959 -14.22574 -14.01323 -13.78394 -13.62213 -13.35692 -13.24488 -12.94544 -12.78384 -12.64337 -12.61641 -12.31275 -12.20270 -12.08209 -11.97053 -11.86764 -11.58185 -11.44060 -10.91198 -10.79815 -10.72863 -10.08372 -9.96432 -8.90560 -7.75482 -5.20500 1.48029 1.49447 1.57828 1.60871 1.70996 2.19064 2.48480 2.52329 3.35027 3.42872 3.56875 3.60042 3.86409 3.87140 3.95956 3.97417 4.21952 4.29143 4.44812 4.49123 4.49847 4.61750 4.67703 4.72730 4.79960 4.90646 4.93662 4.95790 5.05558 5.14291 5.17082 5.30449 5.36634 5.49771 5.59671 5.65285 5.80096 5.87339 6.13057 6.30397 6.64370 7.10873 7.24785 7.34246 7.78859 8.42073 9.26318 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.040840 B = 0.002838 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.434585 B = 9862.233151 C =10038.002556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.150 3.850 3 H 0.055 0.945 4 C 0.153 3.847 5 H 0.074 0.926 6 N -0.705 5.705 7 C 0.505 3.495 8 O -0.585 6.585 9 C -0.140 4.140 10 C 0.139 3.861 11 H 0.082 0.918 12 C -0.113 4.113 13 C -0.149 4.149 14 C 0.501 3.499 15 O -0.602 6.602 16 N -0.720 5.720 17 C -0.136 4.136 18 C 0.156 3.844 19 N -0.614 5.614 20 C -0.227 4.227 21 H 0.085 0.915 22 C -0.069 4.069 23 N -0.951 5.951 24 Si 0.977 3.023 25 H -0.292 1.292 26 H -0.296 1.296 27 H -0.266 1.266 28 H 0.031 0.969 29 H 0.046 0.954 30 H 0.070 0.930 31 H 0.415 0.585 32 H 0.149 0.851 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.107 0.893 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.402 0.598 39 H 0.063 0.937 40 H 0.073 0.927 41 H 0.077 0.923 42 H -0.020 1.020 43 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.255 11.800 -19.541 23.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.044 3.956 3 H 0.073 0.927 4 C 0.046 3.954 5 H 0.092 0.908 6 N -0.357 5.357 7 C 0.293 3.707 8 O -0.465 6.465 9 C -0.180 4.180 10 C 0.034 3.966 11 H 0.100 0.900 12 C -0.150 4.150 13 C -0.189 4.189 14 C 0.289 3.711 15 O -0.484 6.484 16 N -0.373 5.373 17 C -0.175 4.175 18 C 0.030 3.970 19 N -0.340 5.340 20 C -0.355 4.355 21 H 0.103 0.897 22 C -0.261 4.261 23 N -0.601 5.601 24 Si 0.806 3.194 25 H -0.219 1.219 26 H -0.222 1.222 27 H -0.190 1.190 28 H 0.050 0.950 29 H 0.065 0.935 30 H 0.089 0.911 31 H 0.253 0.747 32 H 0.167 0.833 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.126 0.874 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.240 0.760 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.095 0.905 42 H -0.002 1.002 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 4.666 10.913 -19.887 23.160 hybrid contribution -0.743 -0.537 1.907 2.115 sum 3.924 10.376 -17.981 21.127 Atomic orbital electron populations 1.22134 0.96913 1.00469 1.01141 1.21219 0.93246 0.95243 0.85933 0.92706 1.21638 0.95978 0.90958 0.86791 0.90816 1.45918 1.68548 1.15141 1.06057 1.21473 0.76240 0.89110 0.83836 1.90719 1.50762 1.22270 1.82776 1.22165 1.07410 0.97910 0.90486 1.21689 0.82060 0.98684 0.94207 0.90046 1.22785 1.01563 0.99972 0.90694 1.22402 0.93346 1.03397 0.99719 1.21826 0.89574 0.76922 0.82770 1.90712 1.30965 1.57998 1.68753 1.46642 1.15679 1.62706 1.12270 1.23198 0.97832 0.99942 0.96574 1.21708 0.95631 0.87655 0.91959 1.44732 1.59722 1.28590 1.00908 1.19391 1.26306 1.08049 0.81803 0.89693 1.25607 1.00855 0.97753 1.01926 1.70041 1.40392 1.18988 1.30708 0.85087 0.76453 0.78078 0.79770 1.21925 1.22235 1.19042 0.94960 0.93493 0.91099 0.74742 0.83315 0.85961 0.85922 0.87444 0.86583 0.86718 0.75986 0.91804 0.90810 0.90526 1.00236 0.94465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.14 9.13 71.98 0.66 -4.48 16 2 C 0.15 5.57 3.48 45.34 0.16 5.73 16 3 H 0.06 1.86 7.70 -2.39 -0.02 1.84 16 4 C 0.15 5.02 2.79 46.18 0.13 5.15 16 5 H 0.07 2.74 7.33 -2.39 -0.02 2.73 16 6 N -0.71 -15.76 5.19 -436.92 -2.27 -18.03 16 7 C 0.50 10.75 7.63 87.65 0.67 11.42 16 8 O -0.59 -17.91 14.56 -3.04 -0.04 -17.96 16 9 C -0.14 -1.35 5.32 29.85 0.16 -1.19 16 10 C 0.14 1.65 3.01 45.44 0.14 1.79 16 11 H 0.08 1.16 7.99 -2.39 -0.02 1.15 16 12 C -0.11 -0.49 6.69 31.65 0.21 -0.28 16 13 C -0.15 -1.53 6.86 30.59 0.21 -1.32 16 14 C 0.50 11.10 8.43 87.90 0.74 11.84 16 15 O -0.60 -19.87 18.03 -3.04 -0.05 -19.93 16 16 N -0.72 -14.37 5.59 -439.45 -2.46 -16.83 16 17 C -0.14 -5.09 6.79 32.06 0.22 -4.87 16 18 C 0.16 7.67 5.89 86.93 0.51 8.18 16 19 N -0.61 -30.00 3.13 -667.81 -2.09 -32.09 16 20 C -0.23 -12.11 9.89 84.04 0.83 -11.28 16 21 H 0.09 4.31 7.83 -2.91 -0.02 4.28 16 22 C -0.07 -3.83 5.49 84.86 0.47 -3.37 16 23 N -0.95 -56.12 10.09 21.65 0.22 -55.90 16 24 Si 0.98 44.73 29.55 68.60 2.03 46.76 16 25 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 26 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 27 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 28 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.05 1.69 8.04 -2.39 -0.02 1.67 16 30 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.42 6.65 8.34 -92.71 -0.77 5.88 16 32 H 0.15 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.12 -0.06 8.14 -2.39 -0.02 -0.08 16 35 H 0.11 0.09 7.92 -2.38 -0.02 0.07 16 36 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.40 9.87 7.89 -92.70 -0.73 9.14 16 39 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 40 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 41 H 0.08 4.28 5.87 -2.38 -0.01 4.27 16 42 H -0.02 -1.11 8.14 -2.38 -0.02 -1.13 16 43 H 0.25 14.16 8.31 -92.70 -0.77 13.39 16 Total: -1.00 -78.64 347.51 -0.05 -78.69 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -0.48 Total: 17.94 kcal Atomic # 6 Polarization: 12.23 SS G_CDS: 5.10 Total: 17.33 kcal Atomic # 7 Polarization: -116.24 SS G_CDS: -6.60 Total: -122.84 kcal Atomic # 8 Polarization: -37.79 SS G_CDS: -0.10 Total: -37.89 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -78.64 -0.05 -78.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088914697.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.812 kcal (2) G-P(sol) polarization free energy of solvation -78.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds