Wall clock time and date at job start Tue Mar 31 2020 02:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53007 * 109.47098 * 2 1 4 4 C 1.50695 * 109.47114 * 119.99769 * 2 1 3 5 5 O 1.21278 * 120.00122 * 240.00051 * 4 2 1 6 6 N 1.34774 * 120.00035 * 60.00289 * 4 2 1 7 7 C 1.46502 * 120.00334 * 180.02562 * 6 4 2 8 8 H 1.08998 * 115.48966 * 9.60887 * 7 6 4 9 9 C 1.53000 * 117.44279 * 224.22779 * 7 6 4 10 10 H 1.08999 * 120.23255 * 3.80381 * 9 7 6 11 11 C 1.54375 * 118.12844 * 160.68220 * 9 7 6 12 12 N 1.48553 * 104.59544 * 87.22707 * 11 9 7 13 13 C 1.46905 * 111.00165 * 200.96063 * 12 11 9 14 14 C 1.50702 * 109.47072 * 285.41580 * 13 12 11 15 15 O 1.21295 * 119.99806 * 0.02562 * 14 13 12 16 16 N 1.34775 * 119.99819 * 179.97438 * 14 13 12 17 17 C 1.37101 * 119.99826 * 180.02562 * 16 14 13 18 18 H 1.08000 * 120.00004 * 0.02562 * 17 16 14 19 19 C 1.38947 * 120.00227 * 180.02562 * 17 16 14 20 20 N 1.31418 * 119.99864 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00453 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46959 * 60.00070 * 21 19 17 23 23 H 1.48495 * 109.47544 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.47361 * 300.00406 * 21 19 17 25 25 C 1.48555 * 104.22521 * 320.51772 * 12 11 9 26 26 C 1.52995 * 117.44400 * 154.99862 * 7 6 4 27 27 H 1.08990 * 120.23585 * 356.18891 * 26 7 6 28 28 H 1.08999 * 109.47235 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46676 * 300.00505 * 1 2 3 30 30 H 1.09006 * 109.47234 * 59.99851 * 1 2 3 31 31 H 1.08999 * 109.46748 * 240.00279 * 2 1 3 32 32 H 1.08989 * 109.47058 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.46688 * 300.00074 * 3 2 1 34 34 H 1.08999 * 109.47165 * 59.99706 * 3 2 1 35 35 H 0.97007 * 119.99777 * 359.97438 * 6 4 2 36 36 H 1.09006 * 110.40990 * 328.44934 * 11 9 7 37 37 H 1.09002 * 110.51579 * 206.05864 * 11 9 7 38 38 H 1.08994 * 109.47176 * 45.41826 * 13 12 11 39 39 H 1.08999 * 109.46879 * 165.42242 * 13 12 11 40 40 H 0.96999 * 120.00266 * 0.02562 * 16 14 13 41 41 H 0.96999 * 119.99957 * 179.97438 * 20 19 17 42 42 H 1.09001 * 110.41600 * 280.70690 * 25 12 11 43 43 H 1.09004 * 110.41668 * 158.25825 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0324 -0.7103 1.2304 5 8 2.7296 -0.1209 2.0288 6 7 1.7068 -2.0007 1.4438 7 6 2.1947 -2.6911 2.6402 8 1 2.6738 -2.0563 3.3855 9 6 2.7446 -4.1077 2.4619 10 1 2.8217 -4.5452 1.4666 11 6 3.6600 -4.6775 3.5667 12 7 2.7268 -5.2877 4.5483 13 6 3.3650 -5.4288 5.8640 14 6 4.3469 -6.5714 5.8260 15 8 4.5003 -7.2055 4.8034 16 7 5.0553 -6.8881 6.9280 17 6 5.9489 -7.9272 6.8933 18 1 6.0855 -8.4918 5.9828 19 6 6.6789 -8.2541 8.0295 20 7 6.5123 -7.5675 9.1376 21 14 7.8970 -9.6695 7.9821 22 1 8.9346 -9.3953 6.9557 23 1 8.5415 -9.8127 9.3122 24 1 7.1829 -10.9260 7.6407 25 6 1.5873 -4.3365 4.6088 26 6 1.3809 -3.8834 3.1474 27 1 0.4431 -4.1539 2.6624 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4426 -0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.1489 -2.4720 0.8054 36 1 4.2343 -3.8777 4.0344 37 1 4.3284 -5.4344 3.1562 38 1 3.8899 -4.5069 6.1140 39 1 2.6034 -5.6292 6.6176 40 1 4.9329 -6.3808 7.7456 41 1 7.0216 -7.7959 9.9309 42 1 1.8372 -3.4834 5.2395 43 1 0.6935 -4.8370 4.9813 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113865680.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:59:36 Heat of formation + Delta-G solvation = -65.234773 kcal Electronic energy + Delta-G solvation = -23229.618331 eV Core-core repulsion = 19695.470278 eV Total energy + Delta-G solvation = -3534.148053 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.56603 -40.58466 -39.67283 -36.41067 -35.79455 -35.46952 -33.55922 -33.17366 -29.45685 -29.14848 -27.95287 -26.64529 -25.01742 -23.21876 -22.03574 -21.37875 -20.92341 -20.79999 -19.86975 -18.21500 -18.01589 -17.61763 -16.66803 -16.48617 -16.39436 -16.14272 -15.69453 -15.39465 -14.96342 -14.83451 -14.72388 -14.16438 -13.89353 -13.75127 -13.55463 -13.35851 -13.17768 -13.13249 -12.95312 -12.84624 -12.52488 -12.45592 -12.43200 -12.12885 -12.06319 -11.98419 -11.90747 -11.49002 -11.11895 -10.83642 -10.33824 -10.01880 -9.84602 -9.40132 -8.46798 -5.95744 1.39246 1.40626 1.49624 1.51928 1.89769 2.04691 2.28118 2.62280 2.81212 3.19486 3.35195 3.54498 3.63785 3.67576 3.80951 3.98119 4.05931 4.08219 4.22287 4.25733 4.38570 4.43920 4.49121 4.51196 4.61112 4.77286 4.78779 4.89154 4.90524 4.94708 5.08516 5.09931 5.10758 5.31846 5.34033 5.39928 5.44670 5.78319 5.84756 6.05725 6.47453 6.60083 7.12268 7.19048 7.55606 8.11616 8.70515 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.037545 B = 0.002405 C = 0.002369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.591047 B =11640.372745 C =11814.998636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.107 4.107 3 C -0.135 4.135 4 C 0.514 3.486 5 O -0.587 6.587 6 N -0.685 5.685 7 C 0.115 3.885 8 H 0.110 0.890 9 C -0.173 4.173 10 H 0.130 0.870 11 C 0.067 3.933 12 N -0.504 5.504 13 C 0.046 3.954 14 C 0.442 3.558 15 O -0.616 6.616 16 N -0.575 5.575 17 C -0.333 4.333 18 H 0.079 0.921 19 C -0.015 4.015 20 N -0.921 5.921 21 Si 0.994 3.006 22 H -0.272 1.272 23 H -0.270 1.270 24 H -0.271 1.271 25 C 0.057 3.943 26 C -0.145 4.145 27 H 0.149 0.851 28 H 0.075 0.925 29 H 0.050 0.950 30 H 0.088 0.912 31 H 0.123 0.877 32 H 0.044 0.956 33 H 0.088 0.912 34 H 0.046 0.954 35 H 0.420 0.580 36 H 0.035 0.965 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.115 0.885 40 H 0.396 0.604 41 H 0.278 0.722 42 H 0.053 0.947 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.352 15.411 -16.300 27.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.128 4.128 3 C -0.192 4.192 4 C 0.303 3.697 5 O -0.466 6.466 6 N -0.335 5.335 7 C 0.007 3.993 8 H 0.128 0.872 9 C -0.193 4.193 10 H 0.148 0.852 11 C -0.061 4.061 12 N -0.228 5.228 13 C -0.086 4.086 14 C 0.229 3.771 15 O -0.501 6.501 16 N -0.213 5.213 17 C -0.462 4.462 18 H 0.097 0.903 19 C -0.214 4.214 20 N -0.562 5.562 21 Si 0.817 3.183 22 H -0.198 1.198 23 H -0.194 1.194 24 H -0.196 1.196 25 C -0.070 4.070 26 C -0.165 4.165 27 H 0.167 0.833 28 H 0.094 0.906 29 H 0.069 0.931 30 H 0.107 0.893 31 H 0.141 0.859 32 H 0.064 0.936 33 H 0.107 0.893 34 H 0.065 0.935 35 H 0.258 0.742 36 H 0.053 0.947 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.133 0.867 40 H 0.229 0.771 41 H 0.087 0.913 42 H 0.072 0.928 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -14.846 14.854 -16.374 26.630 hybrid contribution 1.049 -0.091 0.878 1.371 sum -13.796 14.763 -15.496 25.464 Atomic orbital electron populations 1.21818 0.90875 1.03696 1.03497 1.21386 0.99038 0.97333 0.95085 1.21644 1.00853 0.94105 1.02641 1.21539 0.78710 0.81312 0.88186 1.90701 1.39831 1.67090 1.48979 1.45223 1.52813 1.11704 1.23780 1.21517 1.00078 0.87458 0.90204 0.87190 1.23855 0.96600 0.98844 1.00037 0.85236 1.22512 0.94588 0.96321 0.92702 1.65240 1.07411 1.44304 1.05858 1.21922 0.97225 0.96112 0.93338 1.20718 0.84608 0.87946 0.83788 1.90477 1.70280 1.56432 1.32940 1.41932 1.36551 1.30668 1.12160 1.19619 1.17830 1.10180 0.98602 0.90335 1.26064 0.99982 1.01230 0.94169 1.69673 1.42862 1.41615 1.02081 0.84975 0.77784 0.77759 0.77733 1.19759 1.19445 1.19615 1.22779 0.95045 0.94179 0.94993 1.23918 0.96784 1.00260 0.95547 0.83324 0.90600 0.93122 0.89320 0.85930 0.93638 0.89345 0.93488 0.74210 0.94666 0.91650 0.91490 0.86738 0.77052 0.91302 0.92849 0.87573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 9.09 71.98 0.65 -0.26 16 2 C -0.11 -1.19 3.26 -11.54 -0.04 -1.23 16 3 C -0.13 -1.79 8.48 71.98 0.61 -1.18 16 4 C 0.51 10.07 7.15 87.66 0.63 10.70 16 5 O -0.59 -17.61 15.55 -3.02 -0.05 -17.66 16 6 N -0.68 -10.83 5.46 -442.55 -2.41 -13.25 16 7 C 0.11 2.44 5.98 44.99 0.27 2.71 16 8 H 0.11 2.95 7.40 -2.39 -0.02 2.93 16 9 C -0.17 -4.17 7.05 -9.90 -0.07 -4.24 16 10 H 0.13 2.82 8.14 -2.39 -0.02 2.80 16 11 C 0.07 2.21 5.73 86.45 0.50 2.71 16 12 N -0.50 -16.80 4.98 -886.04 -4.41 -21.21 16 13 C 0.05 1.65 5.32 85.56 0.46 2.10 16 14 C 0.44 21.80 7.63 87.66 0.67 22.47 16 15 O -0.62 -35.05 14.80 -3.08 -0.05 -35.09 16 16 N -0.58 -30.42 5.29 -306.98 -1.62 -32.04 16 17 C -0.33 -19.32 9.68 84.04 0.81 -18.51 16 18 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 19 C -0.01 -0.81 5.50 84.92 0.47 -0.35 16 20 N -0.92 -50.68 13.05 21.66 0.28 -50.40 16 21 Si 0.99 43.73 29.55 68.60 2.03 45.75 16 22 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 23 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 24 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 25 C 0.06 1.35 6.26 86.45 0.54 1.89 16 26 C -0.15 -2.83 7.05 -9.90 -0.07 -2.90 16 27 H 0.15 2.06 8.14 -2.39 -0.02 2.05 16 28 H 0.08 0.27 7.56 -2.39 -0.02 0.25 16 29 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.09 0.28 8.14 -2.38 -0.02 0.26 16 31 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.04 0.76 8.10 -2.39 -0.02 0.74 16 33 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 34 H 0.05 0.77 8.10 -2.39 -0.02 0.75 16 35 H 0.42 3.63 8.24 -92.70 -0.76 2.87 16 36 H 0.04 1.18 7.75 -2.38 -0.02 1.16 16 37 H 0.06 2.63 7.23 -2.39 -0.02 2.61 16 38 H 0.07 2.23 7.77 -2.39 -0.02 2.21 16 39 H 0.11 3.58 8.08 -2.39 -0.02 3.56 16 40 H 0.40 19.86 7.90 -92.71 -0.73 19.13 16 41 H 0.28 14.31 8.31 -92.71 -0.77 13.54 16 42 H 0.05 1.20 8.00 -2.39 -0.02 1.18 16 43 H 0.11 2.16 8.14 -2.38 -0.02 2.14 16 Total: -1.00 -76.42 356.75 -1.27 -77.70 By element: Atomic # 1 Polarization: 32.74 SS G_CDS: -0.47 Total: 32.27 kcal Atomic # 6 Polarization: 8.50 SS G_CDS: 5.42 Total: 13.92 kcal Atomic # 7 Polarization: -108.73 SS G_CDS: -8.16 Total: -116.89 kcal Atomic # 8 Polarization: -52.66 SS G_CDS: -0.09 Total: -52.75 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Total: -76.42 -1.27 -77.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113865680.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.465 kcal (2) G-P(sol) polarization free energy of solvation -76.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds