Wall clock time and date at job start Tue Mar 31 2020 03:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46982 * 2 1 4 4 H 1.08997 * 109.47368 * 305.00344 * 3 2 1 5 5 N 1.46500 * 109.46959 * 65.00470 * 3 2 1 6 6 C 1.34783 * 119.99516 * 274.99714 * 5 3 2 7 7 C 1.50701 * 119.99843 * 179.72501 * 6 5 3 8 8 O 1.21276 * 120.00298 * 0.02562 * 6 5 3 9 9 C 1.50705 * 109.47198 * 184.99941 * 3 2 1 10 10 O 1.21275 * 120.00139 * 240.00325 * 9 3 2 11 11 N 1.34772 * 119.99629 * 59.99771 * 9 3 2 12 12 C 1.46501 * 119.99945 * 179.97438 * 11 9 3 13 13 H 1.09004 * 115.51536 * 350.41970 * 12 11 9 14 14 C 1.53003 * 117.44638 * 205.00388 * 12 11 9 15 15 H 1.08999 * 119.53389 * 4.11952 * 14 12 11 16 16 C 1.54387 * 118.12247 * 159.21241 * 14 12 11 17 17 N 1.48147 * 104.61984 * 87.19382 * 16 14 12 18 18 C 1.36929 * 127.84172 * 140.41003 * 17 16 14 19 19 H 1.08003 * 120.00536 * 195.57591 * 18 17 16 20 20 C 1.38812 * 120.00170 * 15.57817 * 18 17 16 21 21 N 1.31631 * 119.99681 * 9.09242 * 20 18 17 22 22 Si 1.86797 * 120.00559 * 189.10071 * 20 18 17 23 23 H 1.48495 * 109.47194 * 59.99176 * 22 20 18 24 24 H 1.48492 * 109.47514 * 179.97438 * 22 20 18 25 25 H 1.48510 * 109.46611 * 299.99420 * 22 20 18 26 26 C 1.48147 * 104.32096 * 320.41305 * 17 16 14 27 27 C 1.53001 * 117.44174 * 135.76291 * 12 11 9 28 28 H 1.08998 * 119.54107 * 355.88434 * 27 12 11 29 29 H 1.08994 * 109.47102 * 59.99917 * 1 2 3 30 30 H 1.09004 * 109.46701 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46963 * 299.99765 * 1 2 3 32 32 H 1.08996 * 109.47267 * 240.00166 * 2 1 3 33 33 H 1.08997 * 109.47540 * 120.00304 * 2 1 3 34 34 H 0.96996 * 120.00444 * 94.99988 * 5 3 2 35 35 H 1.09008 * 109.47057 * 0.02562 * 7 6 5 36 36 H 1.08997 * 109.47009 * 119.99802 * 7 6 5 37 37 H 1.08996 * 109.47388 * 240.00150 * 7 6 5 38 38 H 0.97005 * 120.00646 * 0.02562 * 11 9 3 39 39 H 1.09004 * 110.40768 * 205.97542 * 16 14 12 40 40 H 1.09000 * 110.40932 * 328.29276 * 16 14 12 41 41 H 0.96996 * 119.99523 * 180.02562 * 21 20 18 42 42 H 1.08999 * 110.41039 * 158.36644 * 26 17 16 43 43 H 1.08996 * 110.40906 * 280.80459 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 7 1.6525 2.0974 1.2519 6 6 0.4351 2.6643 1.3670 7 6 0.0341 3.3326 2.6568 8 8 -0.3396 2.6319 0.4345 9 6 3.5419 1.4444 -0.1238 10 8 4.2216 1.9436 0.7477 11 7 4.1297 0.8912 -1.2031 12 6 5.5897 0.8935 -1.3238 13 1 6.1207 1.4989 -0.5891 14 6 6.1810 0.8153 -2.7328 15 1 5.5158 0.8291 -3.5962 16 6 7.6332 1.2965 -2.9403 17 7 8.4666 0.1069 -2.6488 18 6 9.5938 -0.3103 -3.3048 19 1 9.9626 -1.3150 -3.1594 20 6 10.2625 0.5579 -4.1568 21 7 9.9239 1.8292 -4.1992 22 14 11.6427 -0.0777 -5.2432 23 1 11.1160 -1.1321 -6.1466 24 1 12.1895 1.0399 -6.0536 25 1 12.7195 -0.6466 -4.3933 26 6 7.8038 -0.5289 -1.4864 27 6 6.2610 -0.4011 -1.7870 28 1 5.6554 -1.2934 -1.9459 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.2719 2.1231 1.9978 35 1 0.8515 3.2581 3.3741 36 1 -0.1885 4.3828 2.4680 37 1 -0.8505 2.8407 3.0612 38 1 3.5861 0.4922 -1.9004 39 1 7.7823 1.6219 -3.9699 40 1 7.8679 2.1059 -2.2490 41 1 10.3910 2.4358 -4.7948 42 1 8.0814 -1.5808 -1.4190 43 1 8.0657 -0.0060 -0.5666 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114863194.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:18 Heat of formation + Delta-G solvation = -15.686202 kcal Electronic energy + Delta-G solvation = -23702.171449 eV Core-core repulsion = 20170.171983 eV Total energy + Delta-G solvation = -3531.999466 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.70236 -39.45793 -38.28384 -35.56107 -34.64162 -33.10282 -32.41435 -30.35654 -29.99362 -27.36296 -27.03996 -25.50166 -22.60960 -21.88643 -20.80982 -20.56455 -20.23811 -19.34616 -17.84609 -17.16661 -16.82315 -16.29909 -15.97113 -15.79083 -14.83655 -14.73771 -14.37192 -14.23868 -13.67108 -13.65028 -13.33593 -12.91994 -12.81823 -12.75110 -12.39231 -12.28203 -12.20327 -11.81057 -11.55192 -11.52200 -11.17779 -11.02219 -10.84015 -10.42207 -10.27529 -10.21176 -10.15036 -9.98315 -9.76382 -9.36193 -9.24386 -8.78083 -8.41655 -6.91113 -5.82963 -3.17600 2.32542 2.43105 2.64589 3.22701 3.37263 3.41622 3.42873 4.22908 4.35968 4.44287 4.54103 4.63997 4.75238 4.88743 5.05709 5.09730 5.11230 5.25193 5.31173 5.35161 5.50171 5.50893 5.53107 5.68354 5.68779 5.79880 5.81284 6.02796 6.09742 6.14595 6.16866 6.46435 6.64014 6.70164 6.83729 7.23629 7.29987 7.40664 7.49249 7.67867 7.94230 8.06768 8.16868 9.07345 9.70153 10.46730 11.31329 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.040099 B = 0.002660 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.110246 B =10523.930399 C =10730.422374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.129 4.129 3 C 0.126 3.874 4 H 0.115 0.885 5 N -0.711 5.711 6 C 0.513 3.487 7 C -0.170 4.170 8 O -0.544 6.544 9 C 0.513 3.487 10 O -0.536 6.536 11 N -0.690 5.690 12 C 0.091 3.909 13 H 0.132 0.868 14 C -0.179 4.179 15 H 0.102 0.898 16 C 0.185 3.815 17 N -0.592 5.592 18 C -0.229 4.229 19 H 0.077 0.923 20 C -0.005 4.005 21 N -0.915 5.915 22 Si 0.914 3.086 23 H -0.284 1.284 24 H -0.289 1.289 25 H -0.283 1.283 26 C 0.158 3.842 27 C -0.184 4.184 28 H 0.107 0.893 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.411 0.589 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.401 0.599 39 H 0.091 0.909 40 H 0.026 0.974 41 H 0.256 0.744 42 H 0.051 0.949 43 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.455 -1.345 10.693 22.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.168 4.168 3 C 0.017 3.983 4 H 0.132 0.868 5 N -0.365 5.365 6 C 0.301 3.699 7 C -0.230 4.230 8 O -0.422 6.422 9 C 0.298 3.702 10 O -0.412 6.412 11 N -0.339 5.339 12 C -0.014 4.014 13 H 0.150 0.850 14 C -0.200 4.200 15 H 0.120 0.880 16 C 0.059 3.941 17 N -0.315 5.315 18 C -0.357 4.357 19 H 0.095 0.905 20 C -0.202 4.202 21 N -0.561 5.561 22 Si 0.744 3.256 23 H -0.211 1.211 24 H -0.215 1.215 25 H -0.209 1.209 26 C 0.031 3.969 27 C -0.206 4.206 28 H 0.125 0.875 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.248 0.752 35 H 0.096 0.904 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.235 0.765 39 H 0.110 0.890 40 H 0.044 0.956 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -19.280 -0.909 10.483 21.964 hybrid contribution 0.693 -0.508 -0.682 1.097 sum -18.587 -1.417 9.801 21.060 Atomic orbital electron populations 1.21800 0.93953 1.01025 1.03252 1.21921 0.97770 0.93899 1.03238 1.20875 0.91539 0.95745 0.90103 0.86759 1.45890 1.17141 1.57438 1.16038 1.20776 0.81055 0.77740 0.90361 1.21839 1.03610 1.02639 0.94901 1.90733 1.51284 1.59117 1.41058 1.20489 0.89711 0.77904 0.82063 1.90703 1.65112 1.45285 1.40108 1.45337 1.07190 1.58960 1.22388 1.21939 0.78628 1.01254 0.99602 0.85007 1.24653 1.01063 1.02711 0.91575 0.88006 1.21071 0.82012 0.88879 1.02148 1.45106 1.27679 1.27400 1.31347 1.18941 1.00225 0.96059 1.20479 0.90536 1.24912 0.98917 0.95121 1.01268 1.69887 1.43620 1.02219 1.40374 0.86172 0.81564 0.77545 0.80308 1.21069 1.21521 1.20933 1.21697 0.87103 0.97140 0.91007 1.25112 0.98559 0.91765 1.05126 0.87479 0.91860 0.93052 0.92384 0.90481 0.91036 0.75198 0.90395 0.88605 0.88709 0.76490 0.89039 0.95578 0.93429 0.93088 0.95168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 8.51 37.16 0.32 -0.96 16 2 C -0.13 -1.10 5.55 -26.73 -0.15 -1.25 16 3 C 0.13 1.27 2.67 -69.08 -0.18 1.09 16 4 H 0.11 1.20 7.58 -51.93 -0.39 0.81 16 5 N -0.71 -6.72 4.90 -54.93 -0.27 -6.99 16 6 C 0.51 4.92 6.51 -10.98 -0.07 4.85 16 7 C -0.17 -0.98 10.39 36.01 0.37 -0.61 16 8 O -0.54 -6.97 14.24 5.56 0.08 -6.89 16 9 C 0.51 6.56 7.22 -10.99 -0.08 6.48 16 10 O -0.54 -8.65 15.40 5.56 0.09 -8.56 16 11 N -0.69 -8.59 5.42 -53.80 -0.29 -8.88 16 12 C 0.09 1.47 5.92 -67.93 -0.40 1.07 16 13 H 0.13 2.43 7.40 -51.93 -0.38 2.05 16 14 C -0.18 -3.26 6.98 -89.22 -0.62 -3.88 16 15 H 0.10 1.69 8.14 -51.93 -0.42 1.27 16 16 C 0.18 4.38 5.70 -2.41 -0.01 4.36 16 17 N -0.59 -14.96 3.38 -166.73 -0.56 -15.52 16 18 C -0.23 -6.30 10.35 -15.06 -0.16 -6.46 16 19 H 0.08 2.02 7.85 -52.48 -0.41 1.61 16 20 C 0.00 -0.14 5.40 -17.43 -0.09 -0.23 16 21 N -0.92 -26.56 10.86 55.49 0.60 -25.96 16 22 Si 0.91 21.70 29.56 -169.99 -5.03 16.67 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 26 C 0.16 3.26 7.10 -0.56 0.00 3.25 16 27 C -0.18 -3.14 7.34 -87.37 -0.64 -3.78 16 28 H 0.11 1.61 8.14 -51.93 -0.42 1.19 16 29 H 0.06 0.62 7.85 -51.93 -0.41 0.22 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.57 5.64 -51.93 -0.29 0.28 16 32 H 0.08 0.56 7.43 -51.93 -0.39 0.18 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.41 3.61 7.63 -40.82 -0.31 3.30 16 35 H 0.08 0.32 7.92 -51.92 -0.41 -0.09 16 36 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.40 3.90 8.19 -40.82 -0.33 3.56 16 39 H 0.09 2.41 6.51 -51.93 -0.34 2.07 16 40 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 350.31 15.07 5.28 5.28 Total: -1.00 -32.85 350.31 -8.44 -41.29 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -6.61 Total: 5.63 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: -1.73 Total: 3.93 kcal Atomic # 7 Polarization: -56.83 SS G_CDS: -0.52 Total: -57.35 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: 0.16 Total: -15.45 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.67 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.85 -8.44 -41.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114863194.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.603 kcal (2) G-P(sol) polarization free energy of solvation -32.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds