Wall clock time and date at job start Tue Mar 31 2020 03:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46982 * 2 1 4 4 H 1.08997 * 109.47368 * 305.00344 * 3 2 1 5 5 N 1.46500 * 109.46959 * 65.00470 * 3 2 1 6 6 C 1.34783 * 119.99516 * 274.99714 * 5 3 2 7 7 C 1.50701 * 119.99843 * 179.72501 * 6 5 3 8 8 O 1.21276 * 120.00298 * 0.02562 * 6 5 3 9 9 C 1.50705 * 109.47198 * 184.99941 * 3 2 1 10 10 O 1.21275 * 120.00139 * 240.00325 * 9 3 2 11 11 N 1.34772 * 119.99629 * 59.99771 * 9 3 2 12 12 C 1.46501 * 119.99945 * 179.97438 * 11 9 3 13 13 H 1.09004 * 115.51536 * 350.41970 * 12 11 9 14 14 C 1.53003 * 117.44638 * 205.00388 * 12 11 9 15 15 H 1.08999 * 119.53389 * 4.11952 * 14 12 11 16 16 C 1.54387 * 118.12247 * 159.21241 * 14 12 11 17 17 N 1.48147 * 104.61984 * 87.19382 * 16 14 12 18 18 C 1.36929 * 127.84172 * 140.41003 * 17 16 14 19 19 H 1.08003 * 120.00536 * 195.57591 * 18 17 16 20 20 C 1.38812 * 120.00170 * 15.57817 * 18 17 16 21 21 N 1.31631 * 119.99681 * 9.09242 * 20 18 17 22 22 Si 1.86797 * 120.00559 * 189.10071 * 20 18 17 23 23 H 1.48495 * 109.47194 * 59.99176 * 22 20 18 24 24 H 1.48492 * 109.47514 * 179.97438 * 22 20 18 25 25 H 1.48510 * 109.46611 * 299.99420 * 22 20 18 26 26 C 1.48147 * 104.32096 * 320.41305 * 17 16 14 27 27 C 1.53001 * 117.44174 * 135.76291 * 12 11 9 28 28 H 1.08998 * 119.54107 * 355.88434 * 27 12 11 29 29 H 1.08994 * 109.47102 * 59.99917 * 1 2 3 30 30 H 1.09004 * 109.46701 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46963 * 299.99765 * 1 2 3 32 32 H 1.08996 * 109.47267 * 240.00166 * 2 1 3 33 33 H 1.08997 * 109.47540 * 120.00304 * 2 1 3 34 34 H 0.96996 * 120.00444 * 94.99988 * 5 3 2 35 35 H 1.09008 * 109.47057 * 0.02562 * 7 6 5 36 36 H 1.08997 * 109.47009 * 119.99802 * 7 6 5 37 37 H 1.08996 * 109.47388 * 240.00150 * 7 6 5 38 38 H 0.97005 * 120.00646 * 0.02562 * 11 9 3 39 39 H 1.09004 * 110.40768 * 205.97542 * 16 14 12 40 40 H 1.09000 * 110.40932 * 328.29276 * 16 14 12 41 41 H 0.96996 * 119.99523 * 180.02562 * 21 20 18 42 42 H 1.08999 * 110.41039 * 158.36644 * 26 17 16 43 43 H 1.08996 * 110.40906 * 280.80459 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 7 1.6525 2.0974 1.2519 6 6 0.4351 2.6643 1.3670 7 6 0.0341 3.3326 2.6568 8 8 -0.3396 2.6319 0.4345 9 6 3.5419 1.4444 -0.1238 10 8 4.2216 1.9436 0.7477 11 7 4.1297 0.8912 -1.2031 12 6 5.5897 0.8935 -1.3238 13 1 6.1207 1.4989 -0.5891 14 6 6.1810 0.8153 -2.7328 15 1 5.5158 0.8291 -3.5962 16 6 7.6332 1.2965 -2.9403 17 7 8.4666 0.1069 -2.6488 18 6 9.5938 -0.3103 -3.3048 19 1 9.9626 -1.3150 -3.1594 20 6 10.2625 0.5579 -4.1568 21 7 9.9239 1.8292 -4.1992 22 14 11.6427 -0.0777 -5.2432 23 1 11.1160 -1.1321 -6.1466 24 1 12.1895 1.0399 -6.0536 25 1 12.7195 -0.6466 -4.3933 26 6 7.8038 -0.5289 -1.4864 27 6 6.2610 -0.4011 -1.7870 28 1 5.6554 -1.2934 -1.9459 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.2719 2.1231 1.9978 35 1 0.8515 3.2581 3.3741 36 1 -0.1885 4.3828 2.4680 37 1 -0.8505 2.8407 3.0612 38 1 3.5861 0.4922 -1.9004 39 1 7.7823 1.6219 -3.9699 40 1 7.8679 2.1059 -2.2490 41 1 10.3910 2.4358 -4.7948 42 1 8.0814 -1.5808 -1.4190 43 1 8.0657 -0.0060 -0.5666 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114863194.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:17 Heat of formation + Delta-G solvation = -39.365055 kcal Electronic energy + Delta-G solvation = -23703.198241 eV Core-core repulsion = 20170.171983 eV Total energy + Delta-G solvation = -3533.026258 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.66551 -40.57690 -39.62647 -36.42400 -36.15687 -34.46948 -33.47808 -32.09901 -30.59560 -28.82131 -28.32737 -27.24892 -23.79839 -23.02584 -22.02280 -21.72672 -21.32417 -20.88973 -18.91713 -18.70034 -18.07738 -17.30707 -16.93758 -16.76149 -16.60959 -15.84182 -15.60574 -15.26135 -14.98878 -14.88058 -14.63166 -14.37509 -13.80970 -13.61530 -13.35805 -13.28639 -13.21865 -13.09418 -12.87805 -12.86395 -12.68043 -12.48307 -12.16045 -12.00979 -11.89650 -11.86594 -11.68906 -11.09306 -10.93845 -10.84639 -10.70077 -10.13677 -9.76105 -8.93294 -7.92443 -5.29341 1.34823 1.46899 1.49928 1.56788 1.57630 1.74156 2.37223 2.48800 2.84128 3.26229 3.39727 3.62537 3.80129 3.83550 3.93193 3.96574 4.03713 4.07583 4.29817 4.36437 4.47841 4.51276 4.56945 4.68231 4.79171 4.83723 4.87351 4.98579 5.00917 5.07414 5.12979 5.26893 5.34501 5.38715 5.43373 5.44750 5.51387 5.64047 6.15984 6.37817 6.52033 6.99471 7.04603 7.22102 7.66759 8.44898 9.21271 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.040099 B = 0.002660 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.110246 B =10523.930399 C =10730.422374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.124 4.124 3 C 0.134 3.866 4 H 0.113 0.887 5 N -0.710 5.710 6 C 0.509 3.491 7 C -0.165 4.165 8 O -0.580 6.580 9 C 0.517 3.483 10 O -0.570 6.570 11 N -0.677 5.677 12 C 0.115 3.885 13 H 0.108 0.892 14 C -0.182 4.182 15 H 0.125 0.875 16 C 0.188 3.812 17 N -0.617 5.617 18 C -0.242 4.242 19 H 0.084 0.916 20 C -0.063 4.063 21 N -0.949 5.949 22 Si 0.982 3.018 23 H -0.275 1.275 24 H -0.295 1.295 25 H -0.275 1.275 26 C 0.148 3.852 27 C -0.161 4.161 28 H 0.143 0.857 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.046 0.954 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.415 0.585 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.107 0.893 38 H 0.419 0.581 39 H 0.058 0.942 40 H -0.004 1.004 41 H 0.250 0.750 42 H 0.063 0.937 43 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.036 -3.026 11.190 24.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.162 4.162 3 C 0.025 3.975 4 H 0.131 0.869 5 N -0.365 5.365 6 C 0.298 3.702 7 C -0.224 4.224 8 O -0.460 6.460 9 C 0.303 3.697 10 O -0.448 6.448 11 N -0.326 5.326 12 C 0.008 3.992 13 H 0.125 0.875 14 C -0.203 4.203 15 H 0.143 0.857 16 C 0.062 3.938 17 N -0.341 5.341 18 C -0.370 4.370 19 H 0.101 0.899 20 C -0.257 4.257 21 N -0.596 5.596 22 Si 0.810 3.190 23 H -0.201 1.201 24 H -0.221 1.221 25 H -0.201 1.201 26 C 0.022 3.978 27 C -0.182 4.182 28 H 0.161 0.839 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.113 0.887 33 H 0.093 0.907 34 H 0.253 0.747 35 H 0.115 0.885 36 H 0.120 0.880 37 H 0.125 0.875 38 H 0.257 0.743 39 H 0.076 0.924 40 H 0.013 0.987 41 H 0.059 0.941 42 H 0.081 0.919 43 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -20.898 -2.624 11.003 23.763 hybrid contribution 1.179 0.047 -0.740 1.392 sum -19.720 -2.577 10.264 22.380 Atomic orbital electron populations 1.21726 0.94147 1.01495 1.02121 1.21917 0.97389 0.92622 1.04312 1.20838 0.89076 0.97084 0.90544 0.86946 1.45972 1.17321 1.57305 1.15859 1.21446 0.80458 0.77099 0.91150 1.21878 1.04797 1.02527 0.93224 1.90718 1.52191 1.60504 1.42593 1.20951 0.90691 0.76739 0.81283 1.90699 1.66123 1.46627 1.41373 1.45117 1.05499 1.58983 1.23050 1.21442 0.80590 1.00037 0.97154 0.87460 1.24319 0.98475 1.03858 0.93674 0.85718 1.20794 0.85528 0.88197 0.99240 1.45404 1.27861 1.27970 1.32816 1.19360 1.00950 0.96396 1.20331 0.89875 1.25775 1.01648 0.95333 1.02921 1.70095 1.44913 1.03386 1.41215 0.85106 0.78706 0.76805 0.78420 1.20069 1.22105 1.20080 1.21844 0.89409 0.97247 0.89262 1.25021 0.96523 0.92977 1.03720 0.83920 0.93007 0.91705 0.93535 0.88667 0.90680 0.74736 0.88510 0.88031 0.87451 0.74342 0.92390 0.98654 0.94094 0.91902 0.95957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 8.51 71.98 0.61 -1.57 16 2 C -0.12 -1.77 5.55 30.60 0.17 -1.60 16 3 C 0.13 2.44 2.67 44.25 0.12 2.56 16 4 H 0.11 2.18 7.58 -2.39 -0.02 2.16 16 5 N -0.71 -12.37 4.90 -446.08 -2.19 -14.56 16 6 C 0.51 9.07 6.51 87.66 0.57 9.64 16 7 C -0.17 -1.57 10.39 71.24 0.74 -0.83 16 8 O -0.58 -14.36 14.24 -3.02 -0.04 -14.40 16 9 C 0.52 12.26 7.22 87.66 0.63 12.89 16 10 O -0.57 -17.83 15.40 -3.02 -0.05 -17.87 16 11 N -0.68 -15.10 5.42 -442.53 -2.40 -17.50 16 12 C 0.11 3.52 5.92 44.99 0.27 3.79 16 13 H 0.11 3.96 7.40 -2.38 -0.02 3.94 16 14 C -0.18 -6.46 6.98 -9.89 -0.07 -6.53 16 15 H 0.13 3.87 8.14 -2.39 -0.02 3.85 16 16 C 0.19 9.21 5.70 86.53 0.49 9.70 16 17 N -0.62 -31.59 3.38 -681.40 -2.30 -33.89 16 18 C -0.24 -13.43 10.35 84.03 0.87 -12.56 16 19 H 0.08 4.38 7.85 -2.91 -0.02 4.35 16 20 C -0.06 -3.56 5.40 84.86 0.46 -3.11 16 21 N -0.95 -57.01 10.86 21.65 0.24 -56.77 16 22 Si 0.98 45.09 29.56 68.60 2.03 47.12 16 23 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 24 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 25 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 26 C 0.15 6.03 7.10 87.73 0.62 6.65 16 27 C -0.16 -5.12 7.34 -8.69 -0.06 -5.18 16 28 H 0.14 3.61 8.14 -2.39 -0.02 3.59 16 29 H 0.05 0.94 7.85 -2.39 -0.02 0.92 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.05 0.85 5.64 -2.38 -0.01 0.83 16 32 H 0.09 1.03 7.43 -2.39 -0.02 1.01 16 33 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.41 6.67 7.63 -92.71 -0.71 5.97 16 35 H 0.10 0.55 7.92 -2.38 -0.02 0.53 16 36 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.42 6.59 8.19 -92.70 -0.76 5.83 16 39 H 0.06 3.20 6.51 -2.39 -0.02 3.18 16 40 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 41 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 42 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 43 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 Total: -1.00 -73.53 350.31 0.27 -73.26 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: -0.43 Total: 20.74 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: 5.42 Total: 13.87 kcal Atomic # 7 Polarization: -116.06 SS G_CDS: -6.66 Total: -122.72 kcal Atomic # 8 Polarization: -32.19 SS G_CDS: -0.09 Total: -32.28 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -73.53 0.27 -73.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114863194.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.895 kcal (2) G-P(sol) polarization free energy of solvation -73.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds