Wall clock time and date at job start Tue Mar 31 2020 04:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09005 * 110.88148 * 2 1 4 4 C 1.54908 * 111.00579 * 236.11904 * 2 1 3 5 5 N 1.47428 * 104.82898 * 204.87463 * 4 2 1 6 6 C 1.36937 * 125.64294 * 204.09209 * 5 4 2 7 7 H 1.08000 * 120.00371 * 349.86416 * 6 5 4 8 8 C 1.38814 * 119.99400 * 169.87130 * 6 5 4 9 9 N 1.31621 * 119.99976 * 152.79973 * 8 6 5 10 10 Si 1.86801 * 119.99998 * 332.79341 * 8 6 5 11 11 H 1.48497 * 109.46977 * 85.30012 * 10 8 6 12 12 H 1.48498 * 109.47297 * 325.29796 * 10 8 6 13 13 H 1.48499 * 109.46959 * 205.29610 * 10 8 6 14 14 C 1.47016 * 108.70227 * 24.35981 * 5 4 2 15 15 C 1.54331 * 107.26976 * 358.58106 * 14 5 4 16 16 H 1.09002 * 110.66641 * 96.52326 * 15 14 5 17 17 N 1.46493 * 110.85500 * 219.67584 * 15 14 5 18 18 C 1.34778 * 119.99766 * 268.69295 * 17 15 14 19 19 O 1.21285 * 120.00181 * 359.97438 * 18 17 15 20 20 C 1.50704 * 119.99890 * 179.97438 * 18 17 15 21 21 N 1.46502 * 109.47198 * 180.02562 * 20 18 17 22 22 C 1.34772 * 119.99906 * 180.02562 * 21 20 18 23 23 O 1.21279 * 120.00091 * 359.97438 * 22 21 20 24 24 C 1.50705 * 119.99919 * 179.97438 * 22 21 20 25 25 C 1.52995 * 117.50211 * 248.74831 * 24 22 21 26 26 C 1.52996 * 117.49878 * 180.08467 * 24 22 21 27 27 H 1.08998 * 109.46803 * 182.42686 * 1 2 3 28 28 H 1.08997 * 109.47307 * 302.42252 * 1 2 3 29 29 H 1.08998 * 109.46987 * 62.43146 * 1 2 3 30 30 H 1.08996 * 110.36378 * 86.03997 * 4 2 1 31 31 H 1.08997 * 110.36708 * 323.71469 * 4 2 1 32 32 H 0.97006 * 119.99588 * 5.04454 * 9 8 6 33 33 H 1.09001 * 109.88088 * 118.12527 * 14 5 4 34 34 H 1.09002 * 109.88269 * 239.28998 * 14 5 4 35 35 H 0.97000 * 120.00256 * 88.68607 * 17 15 14 36 36 H 1.09002 * 109.46870 * 299.99941 * 20 18 17 37 37 H 1.08998 * 109.47224 * 60.00065 * 20 18 17 38 38 H 0.97000 * 119.99607 * 359.97438 * 21 20 18 39 39 H 1.09001 * 115.54864 * 34.42049 * 24 22 21 40 40 H 1.09005 * 117.49340 * 359.97438 * 25 24 22 41 41 H 1.08994 * 117.50165 * 145.01771 * 25 24 22 42 42 H 1.09003 * 117.49970 * 214.98118 * 26 24 22 43 43 H 1.08998 * 117.50181 * 0.02562 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9186 1.0185 0.0000 4 6 2.0854 -0.8062 -1.2006 5 7 3.4276 -1.2419 -0.7740 6 6 4.4644 -1.5648 -1.6083 7 1 4.2913 -1.6697 -2.6692 8 6 5.7378 -1.7574 -1.0904 9 7 6.5871 -2.5497 -1.7094 10 14 6.2461 -0.8919 0.4850 11 1 5.8102 -1.6965 1.6546 12 1 5.6091 0.4484 0.5412 13 1 7.7230 -0.7396 0.5118 14 6 3.4667 -1.2784 0.6951 15 6 2.0870 -0.8077 1.2020 16 1 1.4465 -1.6616 1.4228 17 7 2.2294 0.0497 2.3812 18 6 2.2018 -0.4917 3.6152 19 8 2.0588 -1.6886 3.7494 20 6 2.3488 0.3903 4.8284 21 7 2.2867 -0.4313 6.0398 22 6 2.3959 0.1468 7.2523 23 8 2.5460 1.3471 7.3406 24 6 2.3314 -0.6982 8.4985 25 6 1.1046 -0.5375 9.3984 26 6 2.4596 0.0174 9.8447 27 1 -0.3633 -1.0267 0.0435 28 1 -0.3634 0.5510 0.8674 29 1 -0.3633 0.4756 -0.9110 30 1 2.1554 -0.1714 -2.0838 31 1 1.4524 -1.6702 -1.4026 32 1 6.3501 -2.9411 -2.5648 33 1 3.6617 -2.2953 1.0356 34 1 4.2431 -0.6071 1.0621 35 1 2.3435 1.0069 2.2740 36 1 3.3082 0.9061 4.7884 37 1 1.5424 1.1235 4.8444 38 1 2.1663 -1.3912 5.9691 39 1 2.7669 -1.6939 8.4144 40 1 0.3442 0.1798 9.0893 41 1 0.7331 -1.4273 9.9066 42 1 2.9790 -0.5076 10.6464 43 1 2.5902 1.0995 9.8291 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206205690.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:11:24 Heat of formation + Delta-G solvation = -46.894588 kcal Electronic energy + Delta-G solvation = -23854.745885 eV Core-core repulsion = 20321.393122 eV Total energy + Delta-G solvation = -3533.352763 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.52252 -40.74153 -39.41911 -37.14633 -35.89525 -35.49887 -34.50510 -32.80768 -30.55338 -28.75809 -27.63514 -25.35943 -24.40034 -23.29507 -22.64428 -21.91274 -21.39891 -21.05171 -19.59026 -18.92068 -18.11876 -17.56301 -17.07489 -16.96529 -16.56839 -16.04008 -15.93268 -15.85768 -15.48196 -15.12674 -14.66902 -14.45427 -14.25276 -14.16031 -13.79471 -13.53150 -13.40737 -13.12208 -13.02116 -12.81736 -12.42706 -12.27907 -12.02872 -11.83379 -11.55231 -11.53608 -11.47096 -11.29524 -11.15166 -11.03187 -10.66961 -10.33852 -10.16750 -9.23736 -8.69353 -5.47495 1.31300 1.35527 1.40634 1.43080 1.60479 1.65475 2.31773 2.45112 2.92081 2.96629 3.28784 3.48804 3.54982 3.73226 3.75224 3.86832 3.99479 3.99724 4.17549 4.21008 4.27546 4.33672 4.44902 4.56687 4.67872 4.75588 4.78222 4.85587 4.92156 4.99421 5.01967 5.03484 5.19603 5.20354 5.25133 5.32800 5.45924 5.55329 6.05466 6.35554 6.40269 6.76223 7.02967 7.09875 7.43449 8.06502 8.79580 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.018726 B = 0.003630 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.911811 B = 7712.125425 C = 8733.365858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.095 4.095 3 H 0.099 0.901 4 C 0.130 3.870 5 N -0.629 5.629 6 C -0.320 4.320 7 H 0.051 0.949 8 C -0.076 4.076 9 N -0.953 5.953 10 Si 1.108 2.892 11 H -0.290 1.290 12 H -0.264 1.264 13 H -0.304 1.304 14 C 0.104 3.896 15 C 0.152 3.848 16 H 0.096 0.904 17 N -0.701 5.701 18 C 0.511 3.489 19 O -0.570 6.570 20 C 0.104 3.896 21 N -0.713 5.713 22 C 0.543 3.457 23 O -0.580 6.580 24 C -0.207 4.207 25 C -0.140 4.140 26 C -0.149 4.149 27 H 0.053 0.947 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.051 0.949 31 H 0.032 0.968 32 H 0.251 0.749 33 H 0.009 0.991 34 H 0.029 0.971 35 H 0.421 0.579 36 H 0.108 0.892 37 H 0.122 0.878 38 H 0.416 0.584 39 H 0.144 0.856 40 H 0.092 0.908 41 H 0.130 0.870 42 H 0.125 0.875 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.653 8.312 19.837 26.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.115 4.115 3 H 0.117 0.883 4 C 0.005 3.995 5 N -0.357 5.357 6 C -0.448 4.448 7 H 0.069 0.931 8 C -0.271 4.271 9 N -0.596 5.596 10 Si 0.937 3.063 11 H -0.218 1.218 12 H -0.190 1.190 13 H -0.232 1.232 14 C -0.022 4.022 15 C 0.046 3.954 16 H 0.114 0.886 17 N -0.354 5.354 18 C 0.298 3.702 19 O -0.449 6.449 20 C -0.023 4.023 21 N -0.367 5.367 22 C 0.331 3.669 23 O -0.460 6.460 24 C -0.228 4.228 25 C -0.177 4.177 26 C -0.186 4.186 27 H 0.072 0.928 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.070 0.930 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.027 0.973 34 H 0.046 0.954 35 H 0.259 0.741 36 H 0.126 0.874 37 H 0.140 0.860 38 H 0.255 0.745 39 H 0.162 0.838 40 H 0.111 0.889 41 H 0.148 0.852 42 H 0.143 0.857 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -14.393 8.444 20.960 26.792 hybrid contribution -0.508 -0.726 -2.153 2.328 sum -14.902 7.719 18.807 25.206 Atomic orbital electron populations 1.21656 0.91280 1.02444 1.03341 1.22616 0.97727 0.99203 0.91977 0.88297 1.21921 0.84825 0.95971 0.96753 1.44783 1.10260 1.79792 1.00828 1.19934 0.88729 1.45140 0.91020 0.93069 1.26924 0.92923 0.98832 1.08434 1.71026 1.42169 1.29370 1.17052 0.83210 0.74011 0.76614 0.72479 1.21759 1.18995 1.23243 1.22078 0.97632 0.97618 0.84890 1.21818 0.94262 0.94376 0.84909 0.88624 1.45723 1.73144 1.12122 1.04362 1.20893 0.75296 0.88660 0.85366 1.90708 1.50686 1.16930 1.86562 1.21124 1.06123 0.93225 0.81833 1.45703 1.73879 1.12681 1.04404 1.20170 0.74566 0.87654 0.84518 1.90679 1.51194 1.16573 1.87538 1.22256 1.08889 1.02097 0.89517 1.23069 0.90474 1.04251 0.99897 1.23043 1.00247 1.00828 0.94503 0.92827 0.90608 0.90754 0.93046 0.95048 0.93973 0.97260 0.95385 0.74136 0.87420 0.86000 0.74516 0.83808 0.88940 0.85238 0.85671 0.89172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.45 9.30 71.98 0.67 -1.78 16 2 C -0.10 -2.52 3.27 -9.40 -0.03 -2.55 16 3 H 0.10 2.33 8.01 -2.38 -0.02 2.31 16 4 C 0.13 4.80 6.70 86.85 0.58 5.38 16 5 N -0.63 -30.58 3.28 -691.98 -2.27 -32.85 16 6 C -0.32 -18.76 10.43 84.03 0.88 -17.88 16 7 H 0.05 3.20 8.06 -2.91 -0.02 3.17 16 8 C -0.08 -4.66 5.43 84.86 0.46 -4.20 16 9 N -0.95 -62.34 13.70 21.65 0.30 -62.04 16 10 Si 1.11 55.86 24.69 68.60 1.69 57.55 16 11 H -0.29 -14.28 6.80 99.48 0.68 -13.60 16 12 H -0.26 -11.82 6.75 99.48 0.67 -11.15 16 13 H -0.30 -15.45 7.11 99.48 0.71 -14.74 16 14 C 0.10 4.53 4.76 86.73 0.41 4.94 16 15 C 0.15 4.72 2.78 46.18 0.13 4.85 16 16 H 0.10 3.13 7.42 -2.39 -0.02 3.11 16 17 N -0.70 -16.63 5.11 -436.90 -2.23 -18.87 16 18 C 0.51 12.76 7.90 87.66 0.69 13.45 16 19 O -0.57 -18.53 15.31 -3.04 -0.05 -18.58 16 20 C 0.10 2.01 6.15 85.63 0.53 2.54 16 21 N -0.71 -14.53 5.53 -466.78 -2.58 -17.11 16 22 C 0.54 11.72 7.61 87.66 0.67 12.39 16 23 O -0.58 -16.30 16.26 -3.02 -0.05 -16.35 16 24 C -0.21 -3.10 6.19 -11.54 -0.07 -3.17 16 25 C -0.14 -1.59 10.24 30.62 0.31 -1.28 16 26 C -0.15 -1.97 10.05 30.62 0.31 -1.66 16 27 H 0.05 1.08 8.11 -2.39 -0.02 1.06 16 28 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.03 1.15 8.04 -2.39 -0.02 1.13 16 32 H 0.25 16.38 8.73 -92.70 -0.81 15.57 16 33 H 0.01 0.47 7.97 -2.39 -0.02 0.45 16 34 H 0.03 1.27 3.48 -2.39 -0.01 1.26 16 35 H 0.42 7.06 8.56 -92.71 -0.79 6.27 16 36 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.42 8.29 7.44 -92.71 -0.69 7.60 16 39 H 0.14 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 41 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.09 1.54 7.67 -2.39 -0.02 1.52 16 Total: -1.00 -80.36 352.09 -0.21 -80.57 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -0.56 Total: 16.64 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: 5.53 Total: 11.04 kcal Atomic # 7 Polarization: -124.09 SS G_CDS: -6.79 Total: -130.87 kcal Atomic # 8 Polarization: -34.83 SS G_CDS: -0.10 Total: -34.93 kcal Atomic # 14 Polarization: 55.86 SS G_CDS: 1.69 Total: 57.55 kcal Total: -80.36 -0.21 -80.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206205690.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.676 kcal (2) G-P(sol) polarization free energy of solvation -80.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds