Wall clock time and date at job start Tue Mar 31 2020 04:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21276 * 119.99860 * 2 1 4 4 N 1.34776 * 119.99226 * 180.02562 * 2 1 3 5 5 C 1.46509 * 119.99346 * 179.97438 * 4 2 1 6 6 H 1.09004 * 109.47113 * 324.99303 * 5 4 2 7 7 C 1.53000 * 109.46979 * 84.99840 * 5 4 2 8 8 C 1.50698 * 109.46596 * 204.99578 * 5 4 2 9 9 O 1.21278 * 120.00443 * 0.02562 * 8 5 4 10 10 N 1.34783 * 119.99765 * 179.97438 * 8 5 4 11 11 C 1.47289 * 136.54043 * 359.63665 * 10 8 5 12 12 C 1.54366 * 87.49873 * 151.46034 * 11 10 8 13 13 H 1.09002 * 114.92742 * 141.74828 * 12 11 10 14 14 C 1.53062 * 112.44786 * 274.14977 * 12 11 10 15 15 C 1.53149 * 109.21384 * 142.78035 * 14 12 11 16 16 N 1.46537 * 108.25289 * 301.59147 * 15 14 12 17 17 C 1.36940 * 119.73453 * 236.43787 * 16 15 14 18 18 H 1.07997 * 120.00332 * 26.57604 * 17 16 15 19 19 C 1.38813 * 119.99761 * 206.56124 * 17 16 15 20 20 N 1.31624 * 119.99922 * 12.80348 * 19 17 16 21 21 Si 1.86801 * 119.99860 * 192.79664 * 19 17 16 22 22 H 1.48493 * 109.47207 * 60.00598 * 21 19 17 23 23 H 1.48503 * 109.46872 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47001 * 300.00145 * 21 19 17 25 25 C 1.43232 * 120.57704 * 55.55906 * 16 15 14 26 26 C 1.46467 * 136.54562 * 180.02562 * 10 8 5 27 27 H 1.08992 * 111.43810 * 96.34566 * 26 10 8 28 28 H 1.08998 * 109.47102 * 240.00144 * 1 2 3 29 29 H 1.09002 * 109.46619 * 359.97438 * 1 2 3 30 30 H 1.08993 * 109.47155 * 119.99377 * 1 2 3 31 31 H 0.96993 * 120.00659 * 359.97438 * 4 2 1 32 32 H 1.09000 * 109.47141 * 59.99837 * 7 5 4 33 33 H 1.09003 * 109.46602 * 179.97438 * 7 5 4 34 34 H 1.09000 * 109.46972 * 299.99521 * 7 5 4 35 35 H 1.09001 * 113.52784 * 266.08366 * 11 10 8 36 36 H 1.08994 * 113.53407 * 36.71672 * 11 10 8 37 37 H 1.08995 * 109.51691 * 262.70493 * 14 12 11 38 38 H 1.08998 * 109.51422 * 22.86190 * 14 12 11 39 39 H 1.09001 * 109.70290 * 61.28419 * 15 14 12 40 40 H 1.09004 * 109.70875 * 181.85545 * 15 14 12 41 41 H 0.96993 * 119.99620 * 179.97438 * 20 19 17 42 42 H 1.08997 * 108.83916 * 199.44643 * 25 16 15 43 43 H 1.08999 * 107.23085 * 82.07437 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 3.6459 -1.1673 -0.0011 6 1 4.0090 -0.3254 -0.5906 7 6 4.1564 -1.0419 1.4358 8 6 4.1478 -2.4550 -0.6019 9 8 3.3595 -3.2901 -0.9918 10 7 5.4729 -2.6780 -0.7071 11 6 6.7093 -1.9495 -0.3755 12 6 7.3904 -3.3232 -0.1965 13 1 8.4182 -3.3766 -0.5556 14 6 7.1963 -3.8927 1.2109 15 6 7.0090 -5.4099 1.1192 16 7 5.8482 -5.6783 0.2661 17 6 4.8069 -6.4239 0.7509 18 1 4.6120 -6.4533 1.8128 19 6 4.0016 -7.1419 -0.1226 20 7 4.3768 -7.3147 -1.3723 21 14 2.3855 -7.8628 0.4757 22 1 1.5046 -6.7695 0.9592 23 1 1.7190 -8.5785 -0.6418 24 1 2.6484 -8.8140 1.5853 25 6 5.7845 -5.1518 -1.0644 26 6 6.3339 -3.7514 -1.2088 27 1 6.6581 -3.5571 -2.2311 28 1 -0.3633 -0.5138 0.8900 29 1 -0.3633 1.0277 0.0005 30 1 -0.3633 -0.5137 -0.8900 31 1 1.6958 -2.0073 -0.0005 32 1 3.7932 -1.8838 2.0252 33 1 5.2464 -1.0424 1.4353 34 1 3.7933 -0.1105 1.8703 35 1 7.1097 -1.3706 -1.2078 36 1 6.6405 -1.3725 0.5466 37 1 8.0738 -3.6702 1.8180 38 1 6.3139 -3.4438 1.6669 39 1 7.8986 -5.8644 0.6831 40 1 6.8372 -5.8200 2.1145 41 1 3.8143 -7.8167 -1.9825 42 1 4.7461 -5.1574 -1.3958 43 1 6.3585 -5.8218 -1.7045 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001221244154.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:24:46 Heat of formation + Delta-G solvation = -27.725143 kcal Electronic energy + Delta-G solvation = -25589.777363 eV Core-core repulsion = 22057.255849 eV Total energy + Delta-G solvation = -3532.521513 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.10388 -40.82354 -39.25017 -37.20354 -36.01493 -34.03046 -32.80551 -31.95164 -30.56967 -29.51448 -28.61470 -25.80570 -25.39467 -24.28909 -22.56479 -21.64376 -21.13568 -19.56211 -18.88309 -17.95661 -17.75727 -17.35152 -17.05711 -16.40655 -16.24580 -16.06793 -15.69340 -15.27135 -14.94603 -14.76965 -14.49573 -14.40451 -14.02898 -13.83133 -13.47243 -13.46905 -13.28697 -13.09217 -13.05385 -12.78583 -12.64202 -12.59167 -12.30266 -12.23347 -11.96081 -11.75681 -11.47720 -11.10736 -10.98789 -10.70317 -10.44421 -10.19913 -9.56925 -8.62133 -7.83341 -5.30835 1.38007 1.43646 1.47774 1.50745 1.64222 1.73878 2.33162 2.49404 3.29359 3.32650 3.43029 3.79411 3.82090 3.94306 4.01253 4.03954 4.19902 4.33068 4.47881 4.50393 4.53329 4.61365 4.66315 4.70331 4.71163 4.78343 4.81777 4.94905 5.04474 5.08660 5.11463 5.16560 5.27707 5.33162 5.45507 5.58475 5.71791 5.83939 6.42509 6.43069 6.88773 7.10038 7.19313 7.23529 8.02718 8.36550 9.19672 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.013204 B = 0.006468 C = 0.004851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.126075 B = 4327.653234 C = 5770.482753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.511 3.489 3 O -0.589 6.589 4 N -0.715 5.715 5 C 0.138 3.862 6 H 0.111 0.889 7 C -0.147 4.147 8 C 0.528 3.472 9 O -0.574 6.574 10 N -0.633 5.633 11 C 0.103 3.897 12 C -0.101 4.101 13 H 0.129 0.871 14 C -0.105 4.105 15 C 0.137 3.863 16 N -0.597 5.597 17 C -0.259 4.259 18 H 0.060 0.940 19 C -0.044 4.044 20 N -0.933 5.933 21 Si 0.959 3.041 22 H -0.285 1.285 23 H -0.296 1.296 24 H -0.270 1.270 25 C 0.183 3.817 26 C 0.105 3.895 27 H 0.090 0.910 28 H 0.108 0.892 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.411 0.589 32 H 0.050 0.950 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.115 0.885 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.047 0.953 39 H 0.026 0.974 40 H 0.051 0.949 41 H 0.244 0.756 42 H 0.050 0.950 43 H -0.014 1.014 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.950 15.614 4.504 16.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.301 3.699 3 O -0.470 6.470 4 N -0.369 5.369 5 C 0.030 3.970 6 H 0.129 0.871 7 C -0.206 4.206 8 C 0.317 3.683 9 O -0.453 6.453 10 N -0.368 5.368 11 C -0.018 4.018 12 C -0.120 4.120 13 H 0.147 0.853 14 C -0.144 4.144 15 C 0.012 3.988 16 N -0.319 5.319 17 C -0.390 4.390 18 H 0.077 0.923 19 C -0.239 4.239 20 N -0.579 5.579 21 Si 0.787 3.213 22 H -0.212 1.212 23 H -0.222 1.222 24 H -0.196 1.196 25 C 0.055 3.945 26 C 0.000 4.000 27 H 0.108 0.892 28 H 0.127 0.873 29 H 0.120 0.880 30 H 0.121 0.879 31 H 0.248 0.752 32 H 0.069 0.931 33 H 0.111 0.889 34 H 0.093 0.907 35 H 0.133 0.867 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.066 0.934 39 H 0.044 0.956 40 H 0.070 0.930 41 H 0.053 0.947 42 H 0.069 0.931 43 H 0.004 0.996 Dipole moment (debyes) X Y Z Total from point charges 2.652 15.850 4.191 16.608 hybrid contribution -1.389 -1.443 -0.359 2.035 sum 1.263 14.407 3.833 14.961 Atomic orbital electron populations 1.21936 0.87959 1.06465 1.06147 1.21551 0.92313 0.82155 0.73896 1.90667 1.71958 1.32329 1.52039 1.46037 1.05983 1.10149 1.74693 1.20637 0.82311 0.94851 0.99221 0.87103 1.22096 1.03008 1.02562 0.92892 1.20482 0.80827 0.88253 0.78777 1.90751 1.55266 1.47964 1.51337 1.49542 1.03454 1.22333 1.61491 1.23755 0.79906 0.95326 1.02821 1.22829 0.98758 0.95033 0.95391 0.85289 1.21703 1.01832 0.95754 0.95063 1.20987 0.88798 0.94921 0.94050 1.43057 1.17704 1.58234 1.12915 1.19337 1.06679 1.20759 0.92183 0.92264 1.25703 1.02644 0.99041 0.96548 1.70187 1.37816 1.44408 1.05530 0.85472 0.80716 0.77978 0.77093 1.21181 1.22208 1.19555 1.19325 0.99833 0.89168 0.86131 1.22734 0.88741 0.89587 0.98921 0.89196 0.87319 0.88032 0.87922 0.75220 0.93057 0.88921 0.90678 0.86693 0.88027 0.88105 0.93436 0.95641 0.92999 0.94691 0.93127 0.99631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.78 10.32 71.24 0.74 -2.04 16 2 C 0.51 13.45 7.90 87.66 0.69 14.14 16 3 O -0.59 -19.19 16.75 -3.02 -0.05 -19.24 16 4 N -0.72 -20.45 4.95 -446.08 -2.21 -22.66 16 5 C 0.14 4.06 2.88 44.24 0.13 4.19 16 6 H 0.11 3.14 7.58 -2.39 -0.02 3.12 16 7 C -0.15 -3.64 9.37 71.98 0.67 -2.97 16 8 C 0.53 19.83 7.41 87.66 0.65 20.48 16 9 O -0.57 -27.95 15.11 -3.02 -0.05 -28.00 16 10 N -0.63 -20.87 3.30 -865.44 -2.85 -23.72 16 11 C 0.10 2.11 7.45 81.19 0.60 2.71 16 12 C -0.10 -2.52 4.51 -10.49 -0.05 -2.56 16 13 H 0.13 2.37 8.14 -2.39 -0.02 2.35 16 14 C -0.10 -2.92 5.75 30.66 0.18 -2.75 16 15 C 0.14 5.34 6.46 86.42 0.56 5.90 16 16 N -0.60 -30.28 2.98 -713.23 -2.12 -32.41 16 17 C -0.26 -14.89 9.49 84.03 0.80 -14.10 16 18 H 0.06 3.33 7.84 -2.91 -0.02 3.31 16 19 C -0.04 -2.62 4.95 84.86 0.42 -2.20 16 20 N -0.93 -58.81 10.95 21.65 0.24 -58.58 16 21 Si 0.96 48.31 29.57 68.60 2.03 50.34 16 22 H -0.29 -14.26 7.11 99.48 0.71 -13.56 16 23 H -0.30 -14.99 7.11 99.48 0.71 -14.28 16 24 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 25 C 0.18 9.22 4.47 86.37 0.39 9.61 16 26 C 0.10 3.76 4.08 38.71 0.16 3.92 16 27 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 28 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.10 1.52 8.12 -2.39 -0.02 1.50 16 30 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.41 12.22 7.79 -92.71 -0.72 11.50 16 32 H 0.05 1.42 8.14 -2.39 -0.02 1.41 16 33 H 0.09 1.89 5.25 -2.39 -0.01 1.88 16 34 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.10 1.64 5.71 -2.39 -0.01 1.63 16 37 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.05 1.48 7.76 -2.39 -0.02 1.46 16 39 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.05 2.02 7.88 -2.38 -0.02 2.00 16 41 H 0.24 15.12 8.31 -92.71 -0.77 14.35 16 42 H 0.05 3.07 4.99 -2.39 -0.01 3.06 16 43 H -0.01 -0.79 7.92 -2.39 -0.02 -0.81 16 Total: -1.00 -82.20 342.39 1.21 -80.98 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: 0.30 Total: 18.95 kcal Atomic # 6 Polarization: 28.40 SS G_CDS: 5.93 Total: 34.33 kcal Atomic # 7 Polarization: -130.41 SS G_CDS: -6.95 Total: -137.37 kcal Atomic # 8 Polarization: -47.14 SS G_CDS: -0.10 Total: -47.24 kcal Atomic # 14 Polarization: 48.31 SS G_CDS: 2.03 Total: 50.34 kcal Total: -82.20 1.21 -80.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221244154.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.259 kcal (2) G-P(sol) polarization free energy of solvation -82.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds