Wall clock time and date at job start Tue Mar 31 2020 04:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.46764 * 2 1 4 4 C 1.53003 * 109.46834 * 240.00302 * 2 1 3 5 5 C 1.50699 * 109.47207 * 65.00291 * 4 2 1 6 6 N 1.34775 * 120.00080 * 179.97438 * 5 4 2 7 7 O 1.21288 * 119.99733 * 359.97438 * 5 4 2 8 8 C 1.50692 * 109.46824 * 120.00352 * 2 1 3 9 9 O 1.21283 * 120.00212 * 88.01358 * 8 2 1 10 10 N 1.34778 * 120.00139 * 268.00413 * 8 2 1 11 11 C 1.47805 * 135.01162 * 5.71739 * 10 8 2 12 12 C 1.54648 * 85.79539 * 153.78200 * 11 10 8 13 13 H 1.08998 * 114.44546 * 140.42524 * 12 11 10 14 14 C 1.53011 * 110.83721 * 270.23455 * 12 11 10 15 15 C 1.53095 * 109.45072 * 143.88534 * 14 12 11 16 16 N 1.46613 * 108.00976 * 301.02526 * 15 14 12 17 17 C 1.36943 * 119.89255 * 237.30406 * 16 15 14 18 18 H 1.08008 * 119.99606 * 26.16607 * 17 16 15 19 19 C 1.38803 * 120.00403 * 206.43664 * 17 16 15 20 20 N 1.31625 * 119.99700 * 11.62444 * 19 17 16 21 21 Si 1.86797 * 120.00462 * 191.62280 * 19 17 16 22 22 H 1.48502 * 109.46932 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47269 * 120.00168 * 21 19 17 24 24 H 1.48500 * 109.47116 * 240.00535 * 21 19 17 25 25 C 1.45675 * 120.22087 * 57.57830 * 16 15 14 26 26 C 1.46818 * 135.01578 * 185.68196 * 10 8 2 27 27 H 1.08996 * 111.56124 * 94.50212 * 26 10 8 28 28 H 1.08997 * 109.46782 * 183.15333 * 1 2 3 29 29 H 1.09000 * 109.47338 * 303.15831 * 1 2 3 30 30 H 1.09004 * 109.47206 * 63.15534 * 1 2 3 31 31 H 1.08999 * 109.46826 * 184.99943 * 4 2 1 32 32 H 1.08996 * 109.47314 * 304.99974 * 4 2 1 33 33 H 0.96994 * 119.99843 * 0.02562 * 6 5 4 34 34 H 0.97001 * 119.99746 * 179.97438 * 6 5 4 35 35 H 1.09008 * 113.82159 * 39.56417 * 11 10 8 36 36 H 1.09004 * 113.93008 * 268.01758 * 11 10 8 37 37 H 1.09006 * 109.47735 * 23.88644 * 14 12 11 38 38 H 1.09009 * 109.47132 * 263.87697 * 14 12 11 39 39 H 1.09000 * 109.75776 * 181.39389 * 15 14 12 40 40 H 1.08998 * 109.79733 * 60.67489 * 15 14 12 41 41 H 0.97004 * 119.99526 * 179.97438 * 20 19 17 42 42 H 1.09001 * 108.71415 * 81.48725 * 25 16 15 43 43 H 1.08997 * 108.71965 * 199.50886 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6414 0.0572 -2.4766 6 7 1.9853 -0.3912 -3.7002 7 8 1.0110 1.0872 -2.3632 8 6 2.0323 -0.7105 1.2304 9 8 2.2001 -1.9115 1.2111 10 7 2.2952 -0.0112 2.3522 11 6 2.1181 1.3944 2.7735 12 6 2.0590 0.8358 4.2144 13 1 2.5746 1.4457 4.9561 14 6 0.6209 0.4892 4.6053 15 6 0.6194 -0.7648 5.4835 16 7 1.2345 -1.8542 4.7192 17 6 0.5362 -3.0111 4.4971 18 1 -0.5437 -2.9966 4.4872 19 6 1.2161 -4.2034 4.2903 20 7 2.5082 -4.2745 4.5312 21 14 0.2976 -5.7071 3.6701 22 1 -1.1354 -5.3678 3.4789 23 1 0.8803 -6.1443 2.3762 24 1 0.4175 -6.8048 4.6631 25 6 2.5883 -1.7125 4.2002 26 6 2.8758 -0.3301 3.6625 27 1 3.9449 -0.1198 3.6888 28 1 -0.3633 -1.0261 0.0565 29 1 -0.3634 0.5621 0.8603 30 1 -0.3634 0.4641 -0.9169 31 1 3.1263 -0.7994 -1.2057 32 1 1.6054 -1.7197 -1.2953 33 1 2.4891 -1.2150 -3.7908 34 1 1.7284 0.1097 -4.4901 35 1 1.1827 1.8407 2.4357 36 1 2.9853 2.0262 2.5814 37 1 0.0343 0.3035 3.7055 38 1 0.1842 1.3208 5.1585 39 1 -0.4050 -1.0306 5.7446 40 1 1.1947 -0.5808 6.3908 41 1 2.9833 -5.1079 4.3870 42 1 3.2945 -1.9343 5.0003 43 1 2.7332 -2.4367 3.3986 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001221731965.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:21:06 Heat of formation + Delta-G solvation = -45.420979 kcal Electronic energy + Delta-G solvation = -25461.114176 eV Core-core repulsion = 21927.825314 eV Total energy + Delta-G solvation = -3533.288863 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.85448 -40.71190 -39.19280 -36.98712 -35.08706 -34.65017 -33.93925 -31.89900 -30.56859 -28.91359 -28.51180 -25.68450 -25.30040 -23.89755 -22.60182 -21.59646 -20.50486 -19.44151 -18.79357 -18.13160 -17.80589 -17.31147 -17.19972 -16.51823 -16.38392 -16.15900 -15.63047 -15.18354 -15.02162 -14.90948 -14.59779 -14.26002 -14.11821 -13.82281 -13.68714 -13.42026 -13.12879 -12.93633 -12.74951 -12.66752 -12.38627 -12.21309 -12.17583 -12.08613 -11.94032 -11.71188 -11.46520 -11.16871 -10.99952 -10.65410 -10.59496 -10.17884 -9.45069 -8.63496 -7.82441 -5.27862 1.36846 1.41660 1.48811 1.59931 1.80208 1.95601 2.49660 2.64789 3.33164 3.48986 3.51137 3.68859 3.76259 3.92664 4.01175 4.15092 4.25795 4.38429 4.46776 4.56675 4.61657 4.62419 4.64437 4.72326 4.77905 4.85070 4.90124 4.95030 5.05264 5.08575 5.17241 5.21251 5.34448 5.46900 5.58684 5.73622 5.88159 5.91932 6.41692 6.43483 6.99961 7.22118 7.32512 7.38990 7.98464 8.37898 9.21875 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.014207 B = 0.005885 C = 0.004668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.347319 B = 4756.314872 C = 5996.772904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.075 4.075 3 H 0.107 0.893 4 C -0.125 4.125 5 C 0.526 3.474 6 N -0.836 5.836 7 O -0.575 6.575 8 C 0.527 3.473 9 O -0.579 6.579 10 N -0.636 5.636 11 C 0.108 3.892 12 C -0.101 4.101 13 H 0.124 0.876 14 C -0.106 4.106 15 C 0.139 3.861 16 N -0.602 5.602 17 C -0.254 4.254 18 H 0.058 0.942 19 C -0.045 4.045 20 N -0.934 5.934 21 Si 0.957 3.043 22 H -0.269 1.269 23 H -0.300 1.300 24 H -0.285 1.285 25 C 0.181 3.819 26 C 0.108 3.892 27 H 0.089 0.911 28 H 0.036 0.964 29 H 0.059 0.941 30 H 0.087 0.913 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.417 0.583 34 H 0.410 0.590 35 H 0.094 0.906 36 H 0.115 0.885 37 H 0.041 0.959 38 H 0.098 0.902 39 H 0.050 0.950 40 H 0.027 0.973 41 H 0.244 0.756 42 H -0.007 1.007 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.920 15.077 -11.195 18.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.096 4.096 3 H 0.125 0.875 4 C -0.166 4.166 5 C 0.312 3.688 6 N -0.400 5.400 7 O -0.455 6.455 8 C 0.317 3.683 9 O -0.459 6.459 10 N -0.371 5.371 11 C -0.013 4.013 12 C -0.120 4.120 13 H 0.142 0.858 14 C -0.145 4.145 15 C 0.014 3.986 16 N -0.326 5.326 17 C -0.384 4.384 18 H 0.076 0.924 19 C -0.240 4.240 20 N -0.581 5.581 21 Si 0.786 3.214 22 H -0.193 1.193 23 H -0.227 1.227 24 H -0.212 1.212 25 C 0.054 3.946 26 C 0.004 3.996 27 H 0.107 0.893 28 H 0.055 0.945 29 H 0.078 0.922 30 H 0.105 0.895 31 H 0.125 0.875 32 H 0.116 0.884 33 H 0.247 0.753 34 H 0.242 0.758 35 H 0.112 0.888 36 H 0.133 0.867 37 H 0.060 0.940 38 H 0.116 0.884 39 H 0.068 0.932 40 H 0.045 0.955 41 H 0.053 0.947 42 H 0.011 0.989 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.662 14.822 -11.148 18.558 hybrid contribution 0.046 -1.851 -0.556 1.934 sum 0.708 12.970 -11.704 17.485 Atomic orbital electron populations 1.21716 0.92433 1.01306 1.03652 1.20849 0.98119 1.00405 0.90271 0.87522 1.21447 1.03865 1.00242 0.91028 1.20446 0.77919 0.84592 0.85879 1.43680 1.59144 1.29920 1.07299 1.90691 1.41475 1.26083 1.87285 1.20764 0.77117 0.86668 0.83780 1.90754 1.54632 1.16443 1.84071 1.50025 1.61742 1.12701 1.12663 1.23790 1.03562 0.82648 0.91266 1.22864 0.96654 0.95095 0.97354 0.85797 1.21737 0.94885 0.98183 0.99708 1.20977 0.96453 0.88306 0.92912 1.43718 1.14190 1.14212 1.60454 1.19403 0.90262 0.86323 1.42449 0.92415 1.25649 0.96736 0.99925 1.01683 1.70180 1.08787 1.25638 1.53462 0.85352 0.78469 0.80382 0.77194 1.19312 1.22712 1.21156 1.19801 0.85189 0.93366 0.96199 1.22691 0.97922 0.97389 0.81615 0.89305 0.94452 0.92170 0.89465 0.87537 0.88410 0.75252 0.75795 0.88792 0.86677 0.93984 0.88411 0.93158 0.95518 0.94696 0.98911 0.92417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.96 8.95 71.98 0.64 -3.32 16 2 C -0.07 -2.18 2.21 -11.54 -0.03 -2.21 16 3 H 0.11 2.74 7.71 -2.39 -0.02 2.72 16 4 C -0.13 -3.12 4.71 29.85 0.14 -2.98 16 5 C 0.53 11.55 7.79 87.66 0.68 12.24 16 6 N -0.84 -10.98 8.87 -173.53 -1.54 -12.52 16 7 O -0.58 -16.27 14.81 -3.05 -0.05 -16.31 16 8 C 0.53 20.47 7.04 87.65 0.62 21.09 16 9 O -0.58 -29.32 15.37 -3.04 -0.05 -29.37 16 10 N -0.64 -22.18 3.35 -822.22 -2.75 -24.93 16 11 C 0.11 2.47 7.78 86.33 0.67 3.14 16 12 C -0.10 -2.74 4.39 -10.32 -0.05 -2.79 16 13 H 0.12 2.52 8.14 -2.39 -0.02 2.50 16 14 C -0.11 -3.27 5.66 30.63 0.17 -3.09 16 15 C 0.14 5.69 6.47 86.39 0.56 6.25 16 16 N -0.60 -31.83 3.02 -707.24 -2.13 -33.96 16 17 C -0.25 -15.12 9.54 84.03 0.80 -14.32 16 18 H 0.06 3.40 7.84 -2.91 -0.02 3.37 16 19 C -0.04 -2.74 5.01 84.86 0.43 -2.32 16 20 N -0.93 -59.83 10.84 21.65 0.23 -59.60 16 21 Si 0.96 49.76 29.57 68.60 2.03 51.79 16 22 H -0.27 -13.28 7.11 99.48 0.71 -12.58 16 23 H -0.30 -15.96 7.11 99.48 0.71 -15.26 16 24 H -0.28 -14.33 7.11 99.48 0.71 -13.62 16 25 C 0.18 9.40 4.59 85.91 0.39 9.79 16 26 C 0.11 4.07 4.24 43.84 0.19 4.26 16 27 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 28 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.09 2.46 5.90 -2.39 -0.01 2.45 16 31 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.10 2.64 8.02 -2.39 -0.02 2.62 16 33 H 0.42 3.39 8.83 -92.71 -0.82 2.57 16 34 H 0.41 4.20 8.93 -92.71 -0.83 3.37 16 35 H 0.09 1.87 7.97 -2.38 -0.02 1.85 16 36 H 0.12 1.85 8.14 -2.38 -0.02 1.83 16 37 H 0.04 1.46 7.69 -2.38 -0.02 1.44 16 38 H 0.10 2.22 8.14 -2.38 -0.02 2.20 16 39 H 0.05 2.07 7.89 -2.39 -0.02 2.05 16 40 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.24 15.24 8.31 -92.71 -0.77 14.47 16 42 H -0.01 -0.39 7.96 -2.39 -0.02 -0.41 16 43 H 0.06 3.58 4.84 -2.39 -0.01 3.57 16 Total: -1.00 -85.04 342.56 0.36 -84.68 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -0.61 Total: 14.47 kcal Atomic # 6 Polarization: 20.51 SS G_CDS: 5.23 Total: 25.74 kcal Atomic # 7 Polarization: -124.82 SS G_CDS: -6.19 Total: -131.01 kcal Atomic # 8 Polarization: -45.59 SS G_CDS: -0.09 Total: -45.68 kcal Atomic # 14 Polarization: 49.76 SS G_CDS: 2.03 Total: 51.79 kcal Total: -85.04 0.36 -84.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221731965.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.264 kcal (2) G-P(sol) polarization free energy of solvation -85.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds