Wall clock time and date at job start Tue Mar 31 2020 04:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46615 * 2 1 4 4 C 1.52990 * 109.47084 * 240.00246 * 2 1 3 5 5 N 1.46906 * 109.47473 * 185.00050 * 4 2 1 6 6 C 1.46896 * 111.00220 * 179.97438 * 5 4 2 7 7 C 1.50696 * 109.46825 * 179.97438 * 6 5 4 8 8 O 1.21295 * 120.00429 * 359.97438 * 7 6 5 9 9 N 1.34780 * 120.00020 * 179.97438 * 7 6 5 10 10 C 1.37099 * 120.00087 * 179.97438 * 9 7 6 11 11 H 1.07999 * 120.00235 * 0.02562 * 10 9 7 12 12 C 1.38948 * 119.99726 * 179.97438 * 10 9 7 13 13 N 1.31411 * 119.99994 * 180.02562 * 12 10 9 14 14 Si 1.86802 * 120.00427 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.46784 * 89.99757 * 14 12 10 16 16 H 1.48494 * 109.47238 * 209.99829 * 14 12 10 17 17 H 1.48499 * 109.46761 * 330.00390 * 14 12 10 18 18 N 1.46499 * 109.47277 * 119.99916 * 2 1 3 19 19 C 1.34784 * 119.99971 * 275.00026 * 18 2 1 20 20 O 1.21605 * 119.99806 * 359.72704 * 19 18 2 21 21 C 1.47099 * 119.99647 * 179.97438 * 19 18 2 22 22 C 1.32994 * 119.99461 * 179.97438 * 21 19 18 23 23 C 1.51401 * 136.32112 * 359.63345 * 22 21 19 24 24 C 1.53378 * 87.52180 * 206.05636 * 23 22 21 25 25 C 1.51408 * 136.31089 * 180.02562 * 22 21 19 26 26 H 1.08995 * 109.46954 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47307 * 300.00029 * 1 2 3 28 28 H 1.09000 * 109.47576 * 59.99448 * 1 2 3 29 29 H 1.08999 * 109.47135 * 304.99852 * 4 2 1 30 30 H 1.09000 * 109.47629 * 64.99939 * 4 2 1 31 31 H 1.00902 * 110.99780 * 56.03718 * 5 4 2 32 32 H 1.09004 * 109.47058 * 299.99591 * 6 5 4 33 33 H 1.08997 * 109.47016 * 60.00038 * 6 5 4 34 34 H 0.96998 * 119.99716 * 0.02562 * 9 7 6 35 35 H 0.96995 * 120.00582 * 180.02562 * 13 12 10 36 36 H 0.96999 * 119.99984 * 94.99874 * 18 2 1 37 37 H 1.07999 * 120.00303 * 359.97438 * 21 19 18 38 38 H 1.09003 * 113.56088 * 320.63439 * 23 22 21 39 39 H 1.09000 * 113.56284 * 91.37100 * 23 22 21 40 40 H 1.08997 * 113.97111 * 220.29511 * 24 23 22 41 41 H 1.08999 * 113.60039 * 88.78655 * 24 23 22 42 42 H 1.09007 * 113.55899 * 268.62479 * 25 22 21 43 43 H 1.08991 * 113.56443 * 39.36179 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5041 -0.8266 -1.1904 6 6 4.0303 -1.5158 -2.3762 7 6 5.5316 -1.6042 -2.2807 8 8 6.1068 -1.1385 -1.3197 9 7 6.2353 -2.2009 -3.2633 10 6 7.6012 -2.2809 -3.1767 11 1 8.1133 -1.8662 -2.3210 12 6 8.3266 -2.8964 -4.1894 13 7 9.6358 -2.9736 -4.1062 14 14 7.4409 -3.6143 -5.6692 15 1 7.3207 -2.5772 -6.7252 16 1 8.2119 -4.7693 -6.1951 17 1 6.0860 -4.0669 -5.2634 18 7 2.0184 -0.6906 1.1962 19 6 2.1471 -0.0182 2.3572 20 8 1.8626 1.1629 2.4105 21 6 2.6370 -0.7118 3.5583 22 6 2.7645 -0.0481 4.7038 23 6 2.5315 1.3703 5.1792 24 6 3.5883 1.1107 6.2601 25 6 3.2141 -0.3723 6.1127 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.6054 -1.7197 -1.2951 30 1 1.7516 -0.1582 -2.1369 31 1 3.7996 -1.2883 -0.3433 32 1 3.6094 -2.5199 -2.4295 33 1 3.7557 -0.9587 -3.2719 34 1 5.7754 -2.5730 -4.0320 35 1 10.1423 -3.4029 -4.8133 36 1 2.2491 -1.6317 1.1526 37 1 2.8930 -1.7599 3.5100 38 1 2.8295 2.1274 4.4539 39 1 1.5313 1.5372 5.5789 40 1 3.3392 1.5332 7.2335 41 1 4.6046 1.3418 5.9412 42 1 2.4011 -0.6838 6.7687 43 1 4.0715 -1.0440 6.1528 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497801403.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:24:02 Heat of formation + Delta-G solvation = -28.983707 kcal Electronic energy + Delta-G solvation = -23019.231261 eV Core-core repulsion = 19486.655172 eV Total energy + Delta-G solvation = -3532.576089 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.03295 -38.74241 -38.37319 -36.65437 -34.29216 -33.68472 -31.82692 -31.64074 -30.18110 -27.76879 -25.98579 -25.08883 -23.89347 -23.09437 -21.54396 -20.54190 -19.41764 -18.60792 -18.20881 -17.21135 -16.42991 -16.02045 -15.67881 -15.54271 -15.10686 -14.81919 -14.72532 -14.20591 -14.15807 -13.90036 -13.23518 -13.14296 -12.74627 -12.68920 -12.54810 -12.27139 -12.20001 -11.94603 -11.91865 -11.79657 -11.65030 -11.22534 -11.18359 -11.02427 -10.71118 -10.60840 -9.98582 -9.71534 -9.58394 -9.40041 -9.05570 -8.60309 -8.21325 -8.16450 -6.31926 -3.83487 1.25781 3.00910 3.05984 3.09822 3.13985 3.31273 3.72515 4.00637 4.09387 4.18165 4.28589 4.52791 4.73714 4.81572 4.88671 5.02715 5.08774 5.18449 5.23211 5.29887 5.36650 5.38308 5.48317 5.52406 5.56246 5.59595 5.62109 5.75998 5.77776 5.90574 5.92011 5.99602 6.04495 6.11216 6.43827 6.48190 7.02978 7.48866 7.51941 7.57342 8.13565 8.26063 8.58832 8.94128 9.41379 9.81674 10.81241 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.018012 B = 0.002850 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.137968 B = 9820.777479 C =11066.725197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.145 3.855 3 H 0.098 0.902 4 C 0.051 3.949 5 N -0.667 5.667 6 C 0.047 3.953 7 C 0.449 3.551 8 O -0.563 6.563 9 N -0.590 5.590 10 C -0.305 4.305 11 H 0.119 0.881 12 C 0.041 3.959 13 N -0.881 5.881 14 Si 0.881 3.119 15 H -0.270 1.270 16 H -0.277 1.277 17 H -0.270 1.270 18 N -0.721 5.721 19 C 0.556 3.444 20 O -0.543 6.543 21 C -0.199 4.199 22 C -0.062 4.062 23 C -0.106 4.106 24 C -0.143 4.143 25 C -0.110 4.110 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.032 0.968 30 H 0.087 0.913 31 H 0.350 0.650 32 H 0.045 0.955 33 H 0.088 0.912 34 H 0.370 0.630 35 H 0.273 0.727 36 H 0.397 0.603 37 H 0.132 0.868 38 H 0.087 0.913 39 H 0.096 0.904 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.099 0.901 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.983 1.457 12.899 23.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.040 3.960 3 H 0.116 0.884 4 C -0.079 4.079 5 N -0.300 5.300 6 C -0.085 4.085 7 C 0.234 3.766 8 O -0.445 6.445 9 N -0.230 5.230 10 C -0.434 4.434 11 H 0.137 0.863 12 C -0.162 4.162 13 N -0.521 5.521 14 Si 0.707 3.293 15 H -0.196 1.196 16 H -0.202 1.202 17 H -0.196 1.196 18 N -0.372 5.372 19 C 0.345 3.655 20 O -0.421 6.421 21 C -0.220 4.220 22 C -0.064 4.064 23 C -0.143 4.143 24 C -0.180 4.180 25 C -0.147 4.147 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.050 0.950 30 H 0.105 0.895 31 H 0.170 0.830 32 H 0.062 0.938 33 H 0.107 0.893 34 H 0.203 0.797 35 H 0.084 0.916 36 H 0.231 0.769 37 H 0.150 0.850 38 H 0.106 0.894 39 H 0.114 0.886 40 H 0.095 0.905 41 H 0.105 0.895 42 H 0.118 0.882 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -19.466 3.185 13.218 23.745 hybrid contribution -0.581 -2.229 -1.306 2.648 sum -20.047 0.956 11.913 23.339 Atomic orbital electron populations 1.22145 0.95117 1.01981 1.02701 1.21003 0.93339 0.98541 0.83111 0.88412 1.22308 0.88641 0.98986 0.97994 1.60003 1.07678 1.57455 1.04885 1.21726 0.94884 0.97082 0.94849 1.19710 0.88012 0.83841 0.85002 1.90578 1.70988 1.50021 1.32902 1.42205 1.07862 1.52889 1.20052 1.19434 0.79525 1.35896 1.08528 0.86294 1.25043 0.95444 0.97664 0.98036 1.69619 1.05082 1.43399 1.34038 0.86660 0.79510 0.79791 0.83339 1.19583 1.20196 1.19553 1.45890 1.67734 1.13824 1.09757 1.18347 0.77329 0.86520 0.83263 1.90754 1.50545 1.15546 1.85299 1.21602 1.08005 1.00124 0.92260 1.23441 0.91348 0.97428 0.94142 1.22216 0.99432 0.94897 0.97732 1.22735 0.99903 0.95833 0.99570 1.22357 1.01446 0.97953 0.92900 0.92623 0.91899 0.91469 0.94987 0.89482 0.83029 0.93755 0.89332 0.79698 0.91601 0.76888 0.85014 0.89408 0.88615 0.90469 0.89548 0.88249 0.90261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 9.48 37.16 0.35 -1.12 16 2 C 0.14 1.63 2.88 -67.94 -0.20 1.43 16 3 H 0.10 1.37 7.57 -51.93 -0.39 0.98 16 4 C 0.05 0.56 5.30 -3.83 -0.02 0.54 16 5 N -0.67 -10.18 6.12 -115.06 -0.70 -10.88 16 6 C 0.05 0.77 6.17 -4.98 -0.03 0.74 16 7 C 0.45 10.18 7.82 -10.99 -0.09 10.09 16 8 O -0.56 -15.26 15.78 5.54 0.09 -15.17 16 9 N -0.59 -14.03 5.09 -10.96 -0.06 -14.09 16 10 C -0.31 -8.66 10.16 -14.93 -0.15 -8.81 16 11 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 12 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 13 N -0.88 -25.80 13.96 55.50 0.77 -25.02 16 14 Si 0.88 19.28 27.74 -169.99 -4.71 14.57 16 15 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 16 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 17 H -0.27 -5.35 6.52 56.52 0.37 -4.98 16 18 N -0.72 -8.04 4.35 -54.99 -0.24 -8.28 16 19 C 0.56 7.35 7.73 -12.66 -0.10 7.25 16 20 O -0.54 -8.86 14.81 5.27 0.08 -8.78 16 21 C -0.20 -2.19 10.03 -37.81 -0.38 -2.57 16 22 C -0.06 -0.65 6.93 -100.48 -0.70 -1.34 16 23 C -0.11 -1.06 6.99 -27.56 -0.19 -1.26 16 24 C -0.14 -1.13 8.17 -26.20 -0.21 -1.35 16 25 C -0.11 -0.84 7.95 -27.41 -0.22 -1.06 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.35 5.51 7.28 -39.29 -0.29 5.23 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.37 7.68 5.76 -40.82 -0.24 7.44 16 35 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.40 3.60 8.14 -40.82 -0.33 3.27 16 37 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.09 1.07 7.49 -51.93 -0.39 0.68 16 39 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.10 0.60 8.14 -51.92 -0.42 0.17 16 43 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 361.38 15.07 5.45 5.45 Total: -1.00 -34.96 361.38 -8.04 -43.00 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: -6.69 Total: 15.63 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -2.03 Total: 3.58 kcal Atomic # 7 Polarization: -58.05 SS G_CDS: -0.22 Total: -58.27 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: 0.17 Total: -23.95 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -4.71 Total: 14.57 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.96 -8.04 -43.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497801403.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.017 kcal (2) G-P(sol) polarization free energy of solvation -34.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds