Wall clock time and date at job start Tue Mar 31 2020 04:24:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46615 * 2 1 4 4 C 1.52990 * 109.47084 * 240.00246 * 2 1 3 5 5 N 1.46906 * 109.47473 * 185.00050 * 4 2 1 6 6 C 1.46896 * 111.00220 * 179.97438 * 5 4 2 7 7 C 1.50696 * 109.46825 * 179.97438 * 6 5 4 8 8 O 1.21295 * 120.00429 * 359.97438 * 7 6 5 9 9 N 1.34780 * 120.00020 * 179.97438 * 7 6 5 10 10 C 1.37099 * 120.00087 * 179.97438 * 9 7 6 11 11 H 1.07999 * 120.00235 * 0.02562 * 10 9 7 12 12 C 1.38948 * 119.99726 * 179.97438 * 10 9 7 13 13 N 1.31411 * 119.99994 * 180.02562 * 12 10 9 14 14 Si 1.86802 * 120.00427 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.46784 * 89.99757 * 14 12 10 16 16 H 1.48494 * 109.47238 * 209.99829 * 14 12 10 17 17 H 1.48499 * 109.46761 * 330.00390 * 14 12 10 18 18 N 1.46499 * 109.47277 * 119.99916 * 2 1 3 19 19 C 1.34784 * 119.99971 * 275.00026 * 18 2 1 20 20 O 1.21605 * 119.99806 * 359.72704 * 19 18 2 21 21 C 1.47099 * 119.99647 * 179.97438 * 19 18 2 22 22 C 1.32994 * 119.99461 * 179.97438 * 21 19 18 23 23 C 1.51401 * 136.32112 * 359.63345 * 22 21 19 24 24 C 1.53378 * 87.52180 * 206.05636 * 23 22 21 25 25 C 1.51408 * 136.31089 * 180.02562 * 22 21 19 26 26 H 1.08995 * 109.46954 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47307 * 300.00029 * 1 2 3 28 28 H 1.09000 * 109.47576 * 59.99448 * 1 2 3 29 29 H 1.08999 * 109.47135 * 304.99852 * 4 2 1 30 30 H 1.09000 * 109.47629 * 64.99939 * 4 2 1 31 31 H 1.00902 * 110.99780 * 56.03718 * 5 4 2 32 32 H 1.09004 * 109.47058 * 299.99591 * 6 5 4 33 33 H 1.08997 * 109.47016 * 60.00038 * 6 5 4 34 34 H 0.96998 * 119.99716 * 0.02562 * 9 7 6 35 35 H 0.96995 * 120.00582 * 180.02562 * 13 12 10 36 36 H 0.96999 * 119.99984 * 94.99874 * 18 2 1 37 37 H 1.07999 * 120.00303 * 359.97438 * 21 19 18 38 38 H 1.09003 * 113.56088 * 320.63439 * 23 22 21 39 39 H 1.09000 * 113.56284 * 91.37100 * 23 22 21 40 40 H 1.08997 * 113.97111 * 220.29511 * 24 23 22 41 41 H 1.08999 * 113.60039 * 88.78655 * 24 23 22 42 42 H 1.09007 * 113.55899 * 268.62479 * 25 22 21 43 43 H 1.08991 * 113.56443 * 39.36179 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5041 -0.8266 -1.1904 6 6 4.0303 -1.5158 -2.3762 7 6 5.5316 -1.6042 -2.2807 8 8 6.1068 -1.1385 -1.3197 9 7 6.2353 -2.2009 -3.2633 10 6 7.6012 -2.2809 -3.1767 11 1 8.1133 -1.8662 -2.3210 12 6 8.3266 -2.8964 -4.1894 13 7 9.6358 -2.9736 -4.1062 14 14 7.4409 -3.6143 -5.6692 15 1 7.3207 -2.5772 -6.7252 16 1 8.2119 -4.7693 -6.1951 17 1 6.0860 -4.0669 -5.2634 18 7 2.0184 -0.6906 1.1962 19 6 2.1471 -0.0182 2.3572 20 8 1.8626 1.1629 2.4105 21 6 2.6370 -0.7118 3.5583 22 6 2.7645 -0.0481 4.7038 23 6 2.5315 1.3703 5.1792 24 6 3.5883 1.1107 6.2601 25 6 3.2141 -0.3723 6.1127 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.6054 -1.7197 -1.2951 30 1 1.7516 -0.1582 -2.1369 31 1 3.7996 -1.2883 -0.3433 32 1 3.6094 -2.5199 -2.4295 33 1 3.7557 -0.9587 -3.2719 34 1 5.7754 -2.5730 -4.0320 35 1 10.1423 -3.4029 -4.8133 36 1 2.2491 -1.6317 1.1526 37 1 2.8930 -1.7599 3.5100 38 1 2.8295 2.1274 4.4539 39 1 1.5313 1.5372 5.5789 40 1 3.3392 1.5332 7.2335 41 1 4.6046 1.3418 5.9412 42 1 2.4011 -0.6838 6.7687 43 1 4.0715 -1.0440 6.1528 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497801403.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:24:02 Heat of formation + Delta-G solvation = -56.778868 kcal Electronic energy + Delta-G solvation = -23020.436550 eV Core-core repulsion = 19486.655172 eV Total energy + Delta-G solvation = -3533.781378 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.99273 -40.29426 -39.38125 -37.75880 -36.06668 -35.07429 -33.74699 -32.72586 -31.01947 -29.10872 -26.69324 -26.64735 -24.89094 -24.31014 -22.37093 -21.49229 -21.29270 -20.30912 -19.27628 -18.18733 -17.78568 -17.14819 -17.00507 -16.57516 -16.41557 -16.00336 -15.69589 -15.55088 -15.41730 -14.98212 -14.93915 -14.46778 -14.18331 -14.05442 -13.37463 -13.34323 -13.16242 -13.05776 -12.94304 -12.81051 -12.70717 -12.59035 -12.41263 -11.99455 -11.94190 -11.90451 -11.51832 -11.48414 -10.68319 -10.46770 -10.29486 -10.25441 -9.91765 -9.32510 -8.41603 -6.02977 0.39322 1.30194 1.36535 1.45264 1.95372 2.21350 2.23379 2.36263 2.70925 3.14743 3.34933 3.44056 3.57584 3.81436 3.86942 4.13115 4.19004 4.21729 4.25809 4.36625 4.44365 4.57004 4.60317 4.68318 4.72207 4.75450 4.79957 4.83539 4.92259 5.01894 5.07110 5.25456 5.28007 5.35181 5.52159 5.57090 5.66688 5.89101 6.02981 6.34839 6.59330 6.60389 6.87771 7.30718 7.39331 7.96562 8.76232 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.018012 B = 0.002850 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.137968 B = 9820.777479 C =11066.725197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.144 3.856 3 H 0.062 0.938 4 C 0.058 3.942 5 N -0.693 5.693 6 C 0.062 3.938 7 C 0.446 3.554 8 O -0.617 6.617 9 N -0.590 5.590 10 C -0.330 4.330 11 H 0.053 0.947 12 C -0.017 4.017 13 N -0.936 5.936 14 Si 0.967 3.033 15 H -0.258 1.258 16 H -0.275 1.275 17 H -0.228 1.228 18 N -0.712 5.712 19 C 0.546 3.454 20 O -0.585 6.585 21 C -0.216 4.216 22 C -0.073 4.073 23 C -0.115 4.115 24 C -0.137 4.137 25 C -0.097 4.097 26 H 0.074 0.926 27 H 0.042 0.958 28 H 0.083 0.917 29 H 0.063 0.937 30 H 0.102 0.898 31 H 0.343 0.657 32 H 0.084 0.916 33 H 0.116 0.884 34 H 0.391 0.609 35 H 0.279 0.721 36 H 0.409 0.591 37 H 0.156 0.844 38 H 0.056 0.944 39 H 0.106 0.894 40 H 0.099 0.901 41 H 0.077 0.923 42 H 0.123 0.877 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.144 -0.610 11.612 25.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.040 3.960 3 H 0.080 0.920 4 C -0.071 4.071 5 N -0.327 5.327 6 C -0.070 4.070 7 C 0.234 3.766 8 O -0.501 6.501 9 N -0.232 5.232 10 C -0.459 4.459 11 H 0.071 0.929 12 C -0.215 4.215 13 N -0.576 5.576 14 Si 0.787 3.213 15 H -0.183 1.183 16 H -0.201 1.201 17 H -0.151 1.151 18 N -0.363 5.363 19 C 0.336 3.664 20 O -0.468 6.468 21 C -0.237 4.237 22 C -0.075 4.075 23 C -0.152 4.152 24 C -0.174 4.174 25 C -0.133 4.133 26 H 0.093 0.907 27 H 0.061 0.939 28 H 0.101 0.899 29 H 0.081 0.919 30 H 0.120 0.880 31 H 0.162 0.838 32 H 0.102 0.898 33 H 0.134 0.866 34 H 0.226 0.774 35 H 0.089 0.911 36 H 0.245 0.755 37 H 0.173 0.827 38 H 0.074 0.926 39 H 0.124 0.876 40 H 0.118 0.882 41 H 0.096 0.904 42 H 0.141 0.859 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -22.665 1.094 11.919 25.631 hybrid contribution 0.455 -1.474 -0.786 1.731 sum -22.211 -0.380 11.133 24.847 Atomic orbital electron populations 1.22048 0.93144 1.03153 1.02549 1.20990 0.94763 0.96829 0.83467 0.92000 1.22356 0.85931 1.00736 0.98033 1.59976 1.10515 1.57838 1.04329 1.21655 0.89123 0.99966 0.96218 1.21081 0.90976 0.81248 0.83330 1.90558 1.73023 1.51617 1.34946 1.42018 1.06079 1.53711 1.21347 1.19000 0.81994 1.37422 1.07504 0.92924 1.26159 0.96207 0.97295 1.01837 1.69808 1.07578 1.44435 1.35808 0.85332 0.79775 0.78752 0.77438 1.18273 1.20051 1.15091 1.45856 1.66917 1.14304 1.09258 1.18835 0.76903 0.86219 0.84410 1.90727 1.52637 1.17350 1.86046 1.21768 1.09032 1.01263 0.91627 1.23928 0.90343 0.97740 0.95509 1.22313 1.00771 0.94099 0.98044 1.22721 0.98620 0.96355 0.99730 1.22399 1.02319 0.97687 0.90901 0.90669 0.93861 0.89853 0.91856 0.87996 0.83797 0.89806 0.86559 0.77357 0.91127 0.75512 0.82664 0.92570 0.87566 0.88210 0.90443 0.85878 0.89406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.48 71.98 0.68 -1.80 16 2 C 0.14 3.10 2.88 44.99 0.13 3.23 16 3 H 0.06 1.79 7.57 -2.38 -0.02 1.77 16 4 C 0.06 1.09 5.30 86.30 0.46 1.55 16 5 N -0.69 -19.78 6.12 -517.95 -3.17 -22.95 16 6 C 0.06 1.80 6.17 85.56 0.53 2.33 16 7 C 0.45 19.97 7.82 87.66 0.69 20.65 16 8 O -0.62 -34.63 15.78 -3.08 -0.05 -34.68 16 9 N -0.59 -27.54 5.09 -306.98 -1.56 -29.10 16 10 C -0.33 -19.39 10.16 84.04 0.85 -18.53 16 11 H 0.05 3.71 7.39 -2.91 -0.02 3.69 16 12 C -0.02 -0.92 5.50 84.93 0.47 -0.45 16 13 N -0.94 -56.60 13.96 21.66 0.30 -56.30 16 14 Si 0.97 38.31 27.74 68.60 1.90 40.21 16 15 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 16 H -0.28 -10.84 7.11 99.48 0.71 -10.13 16 17 H -0.23 -7.42 6.52 99.48 0.65 -6.77 16 18 N -0.71 -15.56 4.35 -446.15 -1.94 -17.50 16 19 C 0.55 14.89 7.73 86.57 0.67 15.55 16 20 O -0.59 -20.34 14.81 -4.05 -0.06 -20.40 16 21 C -0.22 -4.77 10.03 23.43 0.23 -4.53 16 22 C -0.07 -1.52 6.93 -17.17 -0.12 -1.64 16 23 C -0.12 -2.39 6.99 30.06 0.21 -2.18 16 24 C -0.14 -2.06 8.17 30.94 0.25 -1.81 16 25 C -0.10 -1.31 7.95 30.16 0.24 -1.07 16 26 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 28 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.34 10.47 7.28 -89.69 -0.65 9.82 16 32 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 33 H 0.12 2.79 8.14 -2.39 -0.02 2.77 16 34 H 0.39 14.85 5.76 -92.71 -0.53 14.31 16 35 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 36 H 0.41 6.86 8.14 -92.71 -0.75 6.11 16 37 H 0.16 2.51 8.06 -2.91 -0.02 2.49 16 38 H 0.06 1.51 7.49 -2.39 -0.02 1.49 16 39 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.12 1.12 8.14 -2.38 -0.02 1.10 16 43 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -84.44 361.38 -0.25 -84.69 By element: Atomic # 1 Polarization: 45.69 SS G_CDS: -0.96 Total: 44.72 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: 5.29 Total: 11.31 kcal Atomic # 7 Polarization: -119.47 SS G_CDS: -6.37 Total: -125.84 kcal Atomic # 8 Polarization: -54.97 SS G_CDS: -0.11 Total: -55.08 kcal Atomic # 14 Polarization: 38.31 SS G_CDS: 1.90 Total: 40.21 kcal Total: -84.44 -0.25 -84.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497801403.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.908 kcal (2) G-P(sol) polarization free energy of solvation -84.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds