Wall clock time and date at job start Tue Mar 31 2020 03:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.58643 * 2 1 4 4 C 1.53192 * 109.58602 * 120.42070 * 2 1 3 5 5 C 1.53042 * 109.31388 * 174.42100 * 4 2 1 6 6 H 1.08997 * 109.44718 * 58.65023 * 5 4 2 7 7 N 1.46499 * 109.46167 * 178.61808 * 5 4 2 8 8 C 1.34775 * 119.99959 * 205.06996 * 7 5 4 9 9 O 1.21279 * 120.00353 * 354.96104 * 8 7 5 10 10 C 1.50705 * 119.99936 * 174.96338 * 8 7 5 11 11 C 1.50701 * 115.54805 * 279.07848 * 10 8 7 12 12 N 1.34772 * 119.99697 * 293.85195 * 11 10 8 13 13 O 1.21284 * 119.99806 * 113.85431 * 11 10 8 14 14 C 1.53006 * 117.49741 * 133.37290 * 10 8 7 15 15 C 1.53000 * 117.49840 * 64.75171 * 10 8 7 16 16 C 1.53043 * 109.53894 * 298.63719 * 5 4 2 17 17 C 1.53197 * 109.31235 * 61.36134 * 16 5 4 18 18 N 1.46920 * 109.58736 * 239.71056 * 2 1 3 19 19 C 1.36939 * 120.62916 * 6.62993 * 18 2 1 20 20 H 1.07996 * 120.00108 * 331.36046 * 19 18 2 21 21 C 1.38819 * 120.00032 * 151.36964 * 19 18 2 22 22 N 1.31617 * 119.99667 * 334.34756 * 21 19 18 23 23 Si 1.86799 * 119.99901 * 154.34823 * 21 19 18 24 24 H 1.48500 * 109.47125 * 94.99185 * 23 21 19 25 25 H 1.48496 * 109.46858 * 214.98774 * 23 21 19 26 26 H 1.48501 * 109.47236 * 334.98812 * 23 21 19 27 27 H 1.08992 * 109.47306 * 180.28927 * 1 2 3 28 28 H 1.08997 * 109.47036 * 60.28773 * 1 2 3 29 29 H 1.09002 * 109.47105 * 300.28507 * 1 2 3 30 30 H 1.09000 * 109.49983 * 294.37497 * 4 2 1 31 31 H 1.09011 * 109.49766 * 54.47335 * 4 2 1 32 32 H 0.97004 * 120.00172 * 25.07166 * 7 5 4 33 33 H 0.96993 * 120.00978 * 4.97669 * 12 11 10 34 34 H 0.97005 * 119.99463 * 184.97585 * 12 11 10 35 35 H 1.09001 * 117.49536 * 359.97438 * 14 10 8 36 36 H 1.09000 * 117.49780 * 145.01864 * 14 10 8 37 37 H 1.09000 * 117.49447 * 214.98078 * 15 10 8 38 38 H 1.08995 * 117.50029 * 359.97438 * 15 10 8 39 39 H 1.09003 * 109.49840 * 301.41173 * 16 5 4 40 40 H 1.08996 * 109.50241 * 181.31318 * 16 5 4 41 41 H 1.08994 * 109.58657 * 185.57654 * 17 16 5 42 42 H 1.09004 * 109.70131 * 65.22191 * 17 16 5 43 43 H 0.97001 * 119.99575 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0435 -0.7308 1.2446 5 6 3.5675 -0.8494 1.1692 6 1 4.0059 0.1461 1.0994 7 7 4.0651 -1.5186 2.3736 8 6 5.3289 -1.3044 2.7901 9 8 6.0825 -0.6311 2.1195 10 6 5.8057 -1.9016 4.0890 11 6 5.4160 -1.1461 5.3334 12 7 5.9164 0.0848 5.5588 13 8 4.6522 -1.6460 6.1320 14 6 7.1636 -2.6066 4.0861 15 6 5.8758 -3.4272 4.1815 16 6 3.9569 -1.6657 -0.0654 17 6 3.4650 -0.9454 -1.3248 18 7 2.0225 -0.6981 -1.1952 19 6 1.1537 -1.1101 -2.1702 20 1 0.1341 -1.3587 -1.9151 21 6 1.5835 -1.2083 -3.4866 22 7 2.5898 -0.4715 -3.9069 23 14 0.7335 -2.3862 -4.6611 24 1 -0.3075 -1.6555 -5.4278 25 1 1.7327 -2.9548 -5.6010 26 1 0.0996 -3.4845 -3.8883 27 1 -0.3633 -1.0276 0.0052 28 1 -0.3633 0.5093 -0.8925 29 1 -0.3633 0.5183 0.8874 30 1 1.7660 -0.1693 2.1367 31 1 1.6029 -1.7269 1.2893 32 1 3.4851 -2.1159 2.8714 33 1 6.4692 0.5141 4.8874 34 1 5.7235 0.5414 6.3926 35 1 7.7119 -2.6388 3.1445 36 1 7.7755 -2.5240 4.9843 37 1 5.6404 -3.8844 5.1426 38 1 5.5767 -3.9989 3.3031 39 1 3.4983 -2.6529 -0.0083 40 1 5.0411 -1.7695 -0.1058 41 1 3.6518 -1.5692 -2.1989 42 1 3.9900 0.0036 -1.4342 43 1 2.8899 -0.5399 -4.8268 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674140454.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:19 Heat of formation + Delta-G solvation = -58.581840 kcal Electronic energy + Delta-G solvation = -24629.359263 eV Core-core repulsion = 21095.499703 eV Total energy + Delta-G solvation = -3533.859560 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.79040 -40.33633 -39.22964 -37.06353 -36.12745 -34.66356 -34.20981 -32.98814 -31.33317 -28.07648 -27.09538 -26.18893 -24.05579 -23.44619 -23.27035 -21.88621 -21.28191 -20.48001 -19.14642 -18.24162 -18.11886 -17.33824 -17.07596 -16.88872 -16.14230 -16.03717 -15.74871 -15.44841 -15.18302 -15.06027 -14.87441 -14.58332 -14.28556 -14.15642 -13.39177 -13.04427 -12.72500 -12.69969 -12.65531 -12.59147 -12.38690 -12.27477 -12.11788 -11.87618 -11.77330 -11.72568 -11.51782 -11.37661 -11.14747 -10.81820 -10.74458 -10.50804 -10.09022 -8.69144 -7.87249 -5.25964 1.16959 1.46168 1.49635 1.50052 1.59254 1.96647 2.30218 2.53617 2.71885 3.26762 3.49540 3.60456 3.68097 3.73792 3.84227 3.85772 4.03209 4.24016 4.36313 4.56878 4.58689 4.65115 4.69986 4.72574 4.78616 4.86760 4.93173 5.04707 5.06807 5.09958 5.14150 5.34772 5.41596 5.48467 5.53342 5.65539 5.75874 5.76356 6.22724 6.40843 6.45632 7.09311 7.15342 7.15587 7.88580 8.42409 9.20299 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.025789 B = 0.003701 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.465614 B = 7564.308428 C = 7964.045751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.160 3.840 3 H 0.012 0.988 4 C -0.119 4.119 5 C 0.163 3.837 6 H 0.061 0.939 7 N -0.704 5.704 8 C 0.554 3.446 9 O -0.562 6.562 10 C -0.211 4.211 11 C 0.568 3.432 12 N -0.830 5.830 13 O -0.566 6.566 14 C -0.115 4.115 15 C -0.124 4.124 16 C -0.128 4.128 17 C 0.184 3.816 18 N -0.600 5.600 19 C -0.257 4.257 20 H 0.078 0.922 21 C -0.048 4.048 22 N -0.931 5.931 23 Si 0.953 3.047 24 H -0.288 1.288 25 H -0.297 1.297 26 H -0.267 1.267 27 H 0.055 0.945 28 H 0.039 0.961 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.412 0.588 33 H 0.414 0.586 34 H 0.414 0.586 35 H 0.110 0.890 36 H 0.128 0.872 37 H 0.121 0.879 38 H 0.116 0.884 39 H 0.063 0.937 40 H 0.051 0.949 41 H 0.045 0.955 42 H -0.008 1.008 43 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.465 -3.335 19.615 20.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.054 3.946 3 H 0.030 0.970 4 C -0.159 4.159 5 C 0.058 3.942 6 H 0.079 0.921 7 N -0.354 5.354 8 C 0.340 3.660 9 O -0.440 6.440 10 C -0.218 4.218 11 C 0.351 3.649 12 N -0.393 5.393 13 O -0.445 6.445 14 C -0.153 4.153 15 C -0.161 4.161 16 C -0.169 4.169 17 C 0.058 3.942 18 N -0.324 5.324 19 C -0.387 4.387 20 H 0.095 0.905 21 C -0.244 4.244 22 N -0.577 5.577 23 Si 0.782 3.218 24 H -0.215 1.215 25 H -0.224 1.224 26 H -0.192 1.192 27 H 0.074 0.926 28 H 0.058 0.942 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.093 0.907 32 H 0.248 0.752 33 H 0.245 0.755 34 H 0.247 0.753 35 H 0.128 0.872 36 H 0.146 0.854 37 H 0.139 0.861 38 H 0.134 0.866 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.010 0.990 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 6.537 -3.267 19.396 20.727 hybrid contribution -0.204 0.053 -1.151 1.170 sum 6.333 -3.214 18.246 19.579 Atomic orbital electron populations 1.21704 0.94012 1.01675 1.01035 1.20612 0.94672 0.92878 0.86443 0.97021 1.22194 0.92658 1.02253 0.98769 1.20723 0.94878 0.95276 0.83302 0.92084 1.46088 1.13259 1.48031 1.28000 1.19421 0.81783 0.79718 0.85127 1.90728 1.55086 1.40866 1.57368 1.21350 1.09216 0.99022 0.92193 1.19041 0.79012 0.81905 0.84972 1.43688 1.54190 1.17459 1.23973 1.90750 1.35896 1.69366 1.48450 1.23196 0.88594 0.97714 1.05773 1.23224 0.99645 0.87405 1.05843 1.22278 0.99407 0.99555 0.95619 1.20391 0.83783 0.95402 0.94648 1.44444 1.02608 1.65715 1.19654 1.19459 0.95545 1.36936 0.86726 0.90482 1.25715 0.99761 1.00557 0.98327 1.70293 1.32132 1.39335 1.15934 0.85485 0.77477 0.79977 0.78886 1.21463 1.22363 1.19185 0.92642 0.94168 0.90614 0.89672 0.90668 0.75157 0.75529 0.75299 0.87177 0.85398 0.86081 0.86588 0.91852 0.93014 0.93664 0.99035 0.94358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.42 7.94 71.98 0.57 -3.85 16 2 C 0.16 6.32 3.50 44.97 0.16 6.47 16 3 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 4 C -0.12 -3.68 4.84 30.67 0.15 -3.53 16 5 C 0.16 5.33 2.38 45.02 0.11 5.44 16 6 H 0.06 2.29 7.65 -2.39 -0.02 2.27 16 7 N -0.70 -18.32 5.07 -442.40 -2.24 -20.57 16 8 C 0.55 14.71 6.93 87.66 0.61 15.32 16 9 O -0.56 -18.96 16.67 -3.03 -0.05 -19.01 16 10 C -0.21 -4.19 2.25 -53.67 -0.12 -4.31 16 11 C 0.57 11.78 7.34 87.66 0.64 12.42 16 12 N -0.83 -12.16 8.87 -173.53 -1.54 -13.70 16 13 O -0.57 -15.19 17.55 -3.04 -0.05 -15.24 16 14 C -0.12 -1.72 9.87 30.60 0.30 -1.42 16 15 C -0.12 -1.92 9.76 30.60 0.30 -1.62 16 16 C -0.13 -4.93 5.65 30.67 0.17 -4.75 16 17 C 0.18 9.00 5.38 86.36 0.46 9.46 16 18 N -0.60 -29.25 2.98 -675.24 -2.01 -31.27 16 19 C -0.26 -13.64 8.53 84.03 0.72 -12.92 16 20 H 0.08 3.93 6.27 -2.91 -0.02 3.91 16 21 C -0.05 -2.65 4.66 84.86 0.40 -2.25 16 22 N -0.93 -55.75 11.84 21.65 0.26 -55.49 16 23 Si 0.95 44.47 29.62 68.60 2.03 46.50 16 24 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 25 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 26 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 27 H 0.05 1.91 7.45 -2.39 -0.02 1.89 16 28 H 0.04 1.57 7.61 -2.39 -0.02 1.55 16 29 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.08 2.18 8.14 -2.39 -0.02 2.17 16 31 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 32 H 0.41 8.89 8.61 -92.70 -0.80 8.09 16 33 H 0.41 5.37 8.83 -92.71 -0.82 4.55 16 34 H 0.41 4.55 8.93 -92.70 -0.83 3.72 16 35 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.13 1.37 8.14 -2.39 -0.02 1.36 16 37 H 0.12 1.74 8.01 -2.39 -0.02 1.72 16 38 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 40 H 0.05 2.00 8.09 -2.39 -0.02 1.98 16 41 H 0.04 2.48 6.39 -2.39 -0.02 2.46 16 42 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 43 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -71.49 352.38 -0.54 -72.03 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: -1.40 Total: 22.28 kcal Atomic # 6 Polarization: 10.00 SS G_CDS: 4.46 Total: 14.47 kcal Atomic # 7 Polarization: -115.48 SS G_CDS: -5.54 Total: -121.03 kcal Atomic # 8 Polarization: -34.15 SS G_CDS: -0.10 Total: -34.26 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -71.49 -0.54 -72.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674140454.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.453 kcal (2) G-P(sol) polarization free energy of solvation -71.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds