Wall clock time and date at job start Tue Mar 31 2020 03:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.87449 * 2 1 4 4 C 1.54318 * 109.88589 * 121.01704 * 2 1 3 5 5 C 1.55155 * 102.94237 * 97.22462 * 4 2 1 6 6 H 1.09002 * 111.00511 * 277.42931 * 5 4 2 7 7 N 1.46907 * 111.00688 * 153.57999 * 5 4 2 8 8 C 1.46899 * 111.00141 * 155.00117 * 7 5 4 9 9 C 1.50701 * 109.46911 * 179.97438 * 8 7 5 10 10 O 1.21286 * 120.00246 * 0.02562 * 9 8 7 11 11 N 1.34776 * 119.99670 * 179.97438 * 9 8 7 12 12 C 1.37094 * 119.99854 * 180.02562 * 11 9 8 13 13 H 1.07997 * 120.00279 * 359.97438 * 12 11 9 14 14 C 1.38955 * 120.00101 * 180.02562 * 12 11 9 15 15 N 1.31409 * 119.99833 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99883 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46933 * 60.00157 * 16 14 12 18 18 H 1.48497 * 109.46853 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.47228 * 299.99958 * 16 14 12 20 20 C 1.54907 * 101.58304 * 35.50235 * 5 4 2 21 21 N 1.47029 * 109.88442 * 238.82843 * 2 1 3 22 22 C 1.34776 * 125.64681 * 59.49736 * 21 2 1 23 23 O 1.21277 * 120.00239 * 0.02562 * 22 21 2 24 24 C 1.50699 * 119.99746 * 180.02562 * 22 21 2 25 25 C 1.53001 * 117.49900 * 248.62067 * 24 22 21 26 26 C 1.52996 * 60.00232 * 252.51353 * 25 24 22 27 27 H 1.09002 * 109.47153 * 298.98055 * 1 2 3 28 28 H 1.09001 * 109.46832 * 178.98246 * 1 2 3 29 29 H 1.09004 * 109.47261 * 58.98228 * 1 2 3 30 30 H 1.08998 * 110.72092 * 215.58609 * 4 2 1 31 31 H 1.09003 * 110.72072 * 338.68803 * 4 2 1 32 32 H 1.00892 * 110.99471 * 31.04284 * 7 5 4 33 33 H 1.09003 * 109.46871 * 299.99872 * 8 7 5 34 34 H 1.09001 * 109.47493 * 59.99918 * 8 7 5 35 35 H 0.97001 * 120.00169 * 0.02562 * 11 9 8 36 36 H 0.96997 * 120.00002 * 179.97438 * 15 14 12 37 37 H 1.09001 * 110.36600 * 81.82996 * 20 5 4 38 38 H 1.09002 * 110.36889 * 204.15108 * 20 5 4 39 39 H 1.08991 * 115.55083 * 34.33140 * 24 22 21 40 40 H 1.09002 * 117.49591 * 0.02562 * 25 24 22 41 41 H 1.08998 * 117.49691 * 145.01682 * 25 24 22 42 42 H 1.08999 * 117.49519 * 252.51317 * 26 25 24 43 43 H 1.08998 * 117.52230 * 107.48111 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0549 -0.7478 1.2437 5 6 2.3519 -2.1685 0.6953 6 1 1.4452 -2.7727 0.6641 7 7 3.3966 -2.8310 1.4876 8 6 3.2809 -4.2925 1.3942 9 6 4.3670 -4.9359 2.2173 10 8 5.1592 -4.2451 2.8225 11 7 4.4575 -6.2791 2.2816 12 6 5.4452 -6.8645 3.0308 13 1 6.1510 -6.2494 3.5690 14 6 5.5388 -8.2493 3.0967 15 7 4.6802 -8.9978 2.4414 16 14 6.8850 -9.0469 4.1170 17 1 6.7449 -8.6288 5.5350 18 1 6.7677 -10.5242 4.0230 19 1 8.2122 -8.6216 3.6044 20 6 2.8568 -1.8508 -0.7343 21 7 2.0301 -0.7157 -1.1830 22 6 1.7744 -0.3884 -2.4652 23 8 1.0774 0.5710 -2.7188 24 6 2.3548 -1.2148 -3.5838 25 6 3.4329 -0.5668 -4.4549 26 6 2.0280 -0.7920 -5.0175 27 1 -0.3633 0.4979 0.8990 28 1 -0.3633 -1.0275 -0.0183 29 1 -0.3634 0.5296 -0.8807 30 1 2.9657 -0.2809 1.6185 31 1 1.2929 -0.7836 2.0223 32 1 3.3687 -2.5267 2.4491 33 1 2.3065 -4.6045 1.7701 34 1 3.3842 -4.5994 0.3534 35 1 3.8237 -6.8316 1.7979 36 1 4.7458 -9.9645 2.4871 37 1 3.9091 -1.5676 -0.7108 38 1 2.7088 -2.7099 -1.3886 39 1 2.4448 -2.2821 -3.3819 40 1 3.7225 0.4571 -4.2187 41 1 4.2324 -1.2078 -4.8262 42 1 1.9033 -1.5813 -5.7588 43 1 1.3928 0.0835 -5.1516 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676703534.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:32 Heat of formation + Delta-G solvation = -42.189175 kcal Electronic energy + Delta-G solvation = -23564.387826 eV Core-core repulsion = 20031.239105 eV Total energy + Delta-G solvation = -3533.148721 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.55865 -38.66517 -37.98982 -36.19164 -34.82052 -33.82713 -32.04820 -31.28078 -29.96287 -26.42626 -26.07037 -25.02678 -23.97455 -22.67198 -21.66020 -20.61592 -19.33221 -19.01934 -17.93883 -17.64417 -16.34498 -16.24391 -15.64491 -15.22838 -15.07260 -14.71682 -14.50774 -14.08094 -13.91334 -13.63214 -13.49563 -13.44182 -12.85005 -12.74018 -12.54989 -12.32092 -12.02033 -11.79405 -11.71423 -11.56296 -11.24916 -11.16955 -11.04605 -10.88003 -10.73142 -10.70602 -10.47069 -10.24824 -9.91642 -9.53902 -8.81692 -8.53774 -8.20316 -8.00601 -6.45453 -3.86482 2.34029 2.72012 3.17524 3.23707 3.27883 3.62894 3.85348 3.94424 4.15431 4.33067 4.37204 4.53908 4.58762 4.65804 4.77666 4.89315 5.01418 5.11230 5.18567 5.19965 5.28360 5.35649 5.41727 5.50357 5.51206 5.64393 5.67909 5.69090 5.74976 5.84708 5.87734 5.89458 5.92037 6.06986 6.21293 6.26644 7.09755 7.35973 7.51483 7.52344 8.01817 8.03188 8.56709 9.13826 9.49722 10.00820 10.72128 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.022381 B = 0.002830 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1250.755984 B = 9892.667712 C =10659.441835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.138 3.862 3 H 0.076 0.924 4 C -0.133 4.133 5 C 0.074 3.926 6 H 0.062 0.938 7 N -0.656 5.656 8 C 0.050 3.950 9 C 0.440 3.560 10 O -0.583 6.583 11 N -0.562 5.562 12 C -0.301 4.301 13 H 0.103 0.897 14 C 0.023 3.977 15 N -0.902 5.902 16 Si 0.931 3.069 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.273 1.273 20 C 0.109 3.891 21 N -0.610 5.610 22 C 0.561 3.439 23 O -0.545 6.545 24 C -0.193 4.193 25 C -0.150 4.150 26 C -0.149 4.149 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.356 0.644 33 H 0.046 0.954 34 H 0.086 0.914 35 H 0.392 0.608 36 H 0.272 0.728 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.124 0.876 40 H 0.098 0.902 41 H 0.105 0.895 42 H 0.103 0.897 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.097 13.254 -9.982 18.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.035 3.965 3 H 0.094 0.906 4 C -0.171 4.171 5 C -0.037 4.037 6 H 0.080 0.920 7 N -0.290 5.290 8 C -0.083 4.083 9 C 0.225 3.775 10 O -0.467 6.467 11 N -0.199 5.199 12 C -0.430 4.430 13 H 0.121 0.879 14 C -0.179 4.179 15 N -0.543 5.543 16 Si 0.758 3.242 17 H -0.199 1.199 18 H -0.210 1.210 19 H -0.198 1.198 20 C -0.014 4.014 21 N -0.344 5.344 22 C 0.350 3.650 23 O -0.422 6.422 24 C -0.214 4.214 25 C -0.188 4.188 26 C -0.186 4.186 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.108 0.892 31 H 0.102 0.898 32 H 0.177 0.823 33 H 0.064 0.936 34 H 0.104 0.896 35 H 0.225 0.775 36 H 0.082 0.918 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.142 0.858 40 H 0.117 0.883 41 H 0.124 0.876 42 H 0.121 0.879 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.485 14.068 -10.267 18.957 hybrid contribution -0.488 -1.263 0.814 1.580 sum -7.973 12.805 -9.453 17.802 Atomic orbital electron populations 1.22163 0.94695 1.02366 1.02914 1.21488 0.94635 0.96287 0.84101 0.90585 1.22944 1.02489 0.95080 0.96575 1.22633 0.93179 0.94366 0.93550 0.91988 1.59958 1.46756 1.05030 1.17260 1.21759 0.97415 0.88036 1.01095 1.19759 0.88120 0.83110 0.86503 1.90528 1.44679 1.62392 1.49137 1.41855 1.29395 1.04543 1.44088 1.19657 1.08399 0.89971 1.25021 0.87940 1.25264 0.98430 0.96247 0.97914 1.69598 1.36442 1.05974 1.42264 0.85916 0.80726 0.77598 0.79984 1.19898 1.20966 1.19841 1.22409 0.95767 0.88249 0.95012 1.48450 1.50575 1.30582 1.04757 1.19281 0.79891 0.84132 0.81691 1.90663 1.39079 1.29250 1.83254 1.22187 1.06995 1.00427 0.91741 1.22929 0.92470 1.02084 1.01313 1.22953 0.98591 1.03930 0.93161 0.91697 0.92528 0.91114 0.89244 0.89765 0.82297 0.93639 0.89588 0.77458 0.91775 0.89659 0.90730 0.85794 0.88324 0.87632 0.87909 0.87518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.05 37.16 0.34 -1.30 16 2 C 0.14 1.46 3.49 -66.95 -0.23 1.22 16 3 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 4 C -0.13 -1.28 5.89 -24.90 -0.15 -1.42 16 5 C 0.07 0.83 3.38 -65.56 -0.22 0.60 16 6 H 0.06 0.68 7.83 -51.93 -0.41 0.27 16 7 N -0.66 -9.49 6.04 -105.72 -0.64 -10.13 16 8 C 0.05 0.80 6.03 -4.98 -0.03 0.77 16 9 C 0.44 9.92 7.82 -10.99 -0.09 9.83 16 10 O -0.58 -15.26 15.78 5.55 0.09 -15.17 16 11 N -0.56 -13.80 5.29 -10.96 -0.06 -13.86 16 12 C -0.30 -8.22 9.68 -14.93 -0.14 -8.36 16 13 H 0.10 2.93 7.16 -52.49 -0.38 2.56 16 14 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 15 N -0.90 -24.07 13.05 55.50 0.72 -23.34 16 16 Si 0.93 20.69 29.55 -169.99 -5.02 15.66 16 17 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 18 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 19 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 20 C 0.11 1.20 6.39 -2.53 -0.02 1.18 16 21 N -0.61 -6.96 3.08 -163.02 -0.50 -7.46 16 22 C 0.56 7.02 7.41 -10.99 -0.08 6.94 16 23 O -0.54 -8.34 15.16 5.56 0.08 -8.26 16 24 C -0.19 -1.89 5.53 -91.77 -0.51 -2.40 16 25 C -0.15 -1.27 10.23 -26.73 -0.27 -1.55 16 26 C -0.15 -1.29 10.04 -26.73 -0.27 -1.56 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.85 6.77 -51.93 -0.35 0.50 16 30 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.08 0.70 7.83 -51.93 -0.41 0.29 16 32 H 0.36 5.32 8.14 -39.30 -0.32 5.00 16 33 H 0.05 0.67 8.09 -51.93 -0.42 0.25 16 34 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.39 9.18 7.90 -40.82 -0.32 8.86 16 36 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 37 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.07 0.75 7.00 -51.93 -0.36 0.38 16 39 H 0.12 1.07 7.07 -51.93 -0.37 0.70 16 40 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.11 1.05 7.67 -51.93 -0.40 0.65 16 LS Contribution 356.76 15.07 5.38 5.38 Total: -1.00 -31.76 356.76 -8.39 -40.15 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: -6.67 Total: 12.58 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: -1.77 Total: 4.47 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: -0.47 Total: -54.80 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: 0.17 Total: -23.43 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.76 -8.39 -40.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676703534.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.043 kcal (2) G-P(sol) polarization free energy of solvation -31.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds