Wall clock time and date at job start Tue Mar 31 2020 04:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21282 * 119.99722 * 2 1 4 4 N 1.34769 * 119.99829 * 180.02562 * 2 1 3 5 5 C 1.46500 * 119.99722 * 179.97438 * 4 2 1 6 6 H 1.09000 * 109.47435 * 34.99778 * 5 4 2 7 7 C 1.52998 * 109.47337 * 274.99737 * 5 4 2 8 8 C 1.50701 * 109.47413 * 154.99956 * 5 4 2 9 9 O 1.21287 * 119.99582 * 19.90847 * 8 5 4 10 10 N 1.34768 * 120.00354 * 199.91900 * 8 5 4 11 11 C 1.47625 * 120.90335 * 353.94790 * 10 8 5 12 12 C 1.53883 * 107.50096 * 132.49324 * 11 10 8 13 13 H 1.09004 * 112.09713 * 182.66691 * 12 11 10 14 14 C 1.54546 * 108.37184 * 307.01087 * 12 11 10 15 15 C 1.54276 * 104.84889 * 89.29653 * 14 12 11 16 16 C 1.54959 * 104.80829 * 359.81790 * 15 14 12 17 17 H 1.08999 * 112.25653 * 146.61136 * 16 15 14 18 18 C 1.47169 * 120.71394 * 174.64047 * 10 8 5 19 19 N 1.48302 * 104.15662 * 24.98757 * 16 15 14 20 20 C 1.36936 * 128.07706 * 139.03932 * 19 16 15 21 21 H 1.08000 * 120.00022 * 30.24076 * 20 19 16 22 22 C 1.38817 * 120.00305 * 210.23191 * 20 19 16 23 23 N 1.31610 * 120.00231 * 198.15589 * 22 20 19 24 24 Si 1.86808 * 119.99466 * 18.15534 * 22 20 19 25 25 H 1.48498 * 109.47183 * 272.36641 * 24 22 20 26 26 H 1.48495 * 109.46964 * 32.37288 * 24 22 20 27 27 H 1.48500 * 109.46576 * 152.37048 * 24 22 20 28 28 H 1.09009 * 109.46733 * 269.98989 * 1 2 3 29 29 H 1.09000 * 109.47253 * 29.98975 * 1 2 3 30 30 H 1.08998 * 109.47285 * 149.99767 * 1 2 3 31 31 H 0.97003 * 120.00528 * 359.97438 * 4 2 1 32 32 H 1.09001 * 109.47192 * 185.36047 * 7 5 4 33 33 H 1.09000 * 109.47434 * 305.36675 * 7 5 4 34 34 H 1.09004 * 109.46851 * 65.36570 * 7 5 4 35 35 H 1.09000 * 109.37995 * 13.38491 * 11 10 8 36 36 H 1.08999 * 110.63617 * 252.32352 * 11 10 8 37 37 H 1.09001 * 110.36330 * 208.14179 * 14 12 11 38 38 H 1.09001 * 110.36354 * 330.45233 * 14 12 11 39 39 H 1.09010 * 110.36214 * 118.84300 * 15 14 12 40 40 H 1.08996 * 110.36604 * 241.04918 * 15 14 12 41 41 H 1.08995 * 109.75040 * 107.60215 * 18 10 8 42 42 H 1.09006 * 109.74604 * 346.86956 * 18 10 8 43 43 H 0.97004 * 120.00072 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6459 -1.1671 -0.0011 6 1 4.0095 -0.3254 0.5884 7 6 4.1553 -1.0411 -1.4382 8 6 4.1485 -2.4549 0.5989 9 8 3.4196 -3.4226 0.6555 10 7 5.4079 -2.5313 1.0727 11 6 6.3537 -1.4118 0.8956 12 6 7.0220 -1.1508 2.2569 13 1 7.7057 -0.3025 2.2223 14 6 5.9125 -0.9630 3.3162 15 6 5.6296 -2.3832 3.8485 16 6 6.5935 -3.3023 3.0565 17 1 6.9397 -4.1476 3.6512 18 6 5.8778 -3.7409 1.7667 19 7 7.7049 -2.4048 2.6580 20 6 9.0477 -2.6733 2.6554 21 1 9.3965 -3.6812 2.4860 22 6 9.9606 -1.6498 2.8703 23 7 11.2203 -1.8081 2.5237 24 14 9.4009 -0.0479 3.6516 25 1 8.9151 0.8751 2.5946 26 1 8.3022 -0.3230 4.6119 27 1 10.5407 0.5774 4.3692 28 1 -0.3633 -0.0002 1.0278 29 1 -0.3634 0.8901 -0.5137 30 1 -0.3634 -0.8899 -0.5139 31 1 1.6959 -2.0073 -0.0005 32 1 5.2411 -1.1366 -1.4485 33 1 3.7155 -1.8287 -2.0501 34 1 3.8724 -0.0682 -1.8400 35 1 5.8076 -0.5238 0.5772 36 1 7.1127 -1.6636 0.1549 37 1 6.2629 -0.3186 4.1224 38 1 5.0168 -0.5446 2.8572 39 1 5.8410 -2.4370 4.9166 40 1 4.5943 -2.6623 3.6529 41 1 6.5720 -4.2862 1.1274 42 1 5.0279 -4.3767 2.0151 43 1 11.8581 -1.0927 2.6735 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691805170.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:24:39 Heat of formation + Delta-G solvation = -50.947494 kcal Electronic energy + Delta-G solvation = -25624.274179 eV Core-core repulsion = 22090.745669 eV Total energy + Delta-G solvation = -3533.528510 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 295.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.03878 -40.69987 -39.50127 -36.11322 -35.60937 -34.39103 -32.91830 -32.07016 -31.76286 -29.75477 -28.17021 -26.11589 -25.48194 -24.68651 -21.97920 -21.73621 -21.14882 -20.32916 -19.06845 -18.21909 -17.87145 -17.65127 -16.99118 -16.76847 -16.28998 -16.03352 -15.41991 -15.28553 -15.17679 -14.80870 -14.79534 -14.53030 -14.13291 -13.99445 -13.60588 -13.48166 -13.31552 -13.21489 -13.05630 -12.99296 -12.82528 -12.65570 -12.50922 -12.27596 -11.96454 -11.61942 -11.52892 -11.32239 -11.03457 -10.90655 -10.68390 -10.26299 -9.90999 -8.88238 -8.19054 -5.54311 1.27116 1.38873 1.41121 1.50376 1.61390 1.72958 2.34178 2.40268 2.97907 3.17378 3.25317 3.78934 3.86379 3.86982 3.98564 4.03253 4.05215 4.07765 4.20040 4.37447 4.51220 4.52060 4.58128 4.65389 4.68584 4.70161 4.74291 4.81548 4.85420 4.91108 4.95440 5.08541 5.09541 5.17726 5.28817 5.31157 5.45925 5.74489 6.12891 6.34288 6.50713 6.69798 6.96123 7.19709 7.47995 8.18673 9.01013 Molecular weight = 295.17amu Principal moments of inertia in cm(-1) A = 0.022517 B = 0.004933 C = 0.004642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.191787 B = 5674.691310 C = 6030.122288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.508 3.492 3 O -0.592 6.592 4 N -0.708 5.708 5 C 0.124 3.876 6 H 0.104 0.896 7 C -0.154 4.154 8 C 0.517 3.483 9 O -0.568 6.568 10 N -0.586 5.586 11 C 0.102 3.898 12 C 0.106 3.894 13 H 0.071 0.929 14 C -0.126 4.126 15 C -0.116 4.116 16 C 0.131 3.869 17 H 0.089 0.911 18 C 0.113 3.887 19 N -0.612 5.612 20 C -0.225 4.225 21 H 0.055 0.945 22 C -0.024 4.024 23 N -0.954 5.954 24 Si 0.936 3.064 25 H -0.268 1.268 26 H -0.252 1.252 27 H -0.314 1.314 28 H 0.109 0.891 29 H 0.098 0.902 30 H 0.106 0.894 31 H 0.417 0.583 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.102 0.898 36 H 0.069 0.931 37 H 0.057 0.943 38 H 0.078 0.922 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.055 0.945 42 H 0.094 0.906 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.580 1.929 -4.509 22.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.298 3.702 3 O -0.473 6.473 4 N -0.363 5.363 5 C 0.015 3.985 6 H 0.122 0.878 7 C -0.212 4.212 8 C 0.305 3.695 9 O -0.449 6.449 10 N -0.318 5.318 11 C -0.022 4.022 12 C 0.000 4.000 13 H 0.088 0.912 14 C -0.165 4.165 15 C -0.155 4.155 16 C 0.024 3.976 17 H 0.107 0.893 18 C -0.011 4.011 19 N -0.335 5.335 20 C -0.354 4.354 21 H 0.073 0.927 22 C -0.219 4.219 23 N -0.600 5.600 24 Si 0.766 3.234 25 H -0.195 1.195 26 H -0.176 1.176 27 H -0.243 1.243 28 H 0.127 0.873 29 H 0.117 0.883 30 H 0.124 0.876 31 H 0.256 0.744 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.120 0.880 36 H 0.087 0.913 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.073 0.927 42 H 0.112 0.888 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -21.239 2.163 -4.457 21.809 hybrid contribution 0.719 0.295 0.399 0.873 sum -20.520 2.457 -4.058 21.062 Atomic orbital electron populations 1.21902 0.87624 1.06400 1.06287 1.21655 0.92400 0.82290 0.73876 1.90716 1.71978 1.32789 1.51822 1.45951 1.05212 1.10219 1.74918 1.20738 0.82971 0.95632 0.99111 0.87783 1.22085 1.02230 1.03630 0.93262 1.20676 0.81316 0.89879 0.77614 1.90634 1.56514 1.38953 1.58768 1.48085 1.10951 1.17542 1.55193 1.22558 0.92255 0.89111 0.98318 1.22440 0.93332 0.90668 0.93597 0.91179 1.22555 0.97969 0.97760 0.98173 1.22474 0.98891 0.94614 0.99503 1.22319 0.87527 0.94506 0.93219 0.89289 1.22180 0.98588 0.86283 0.94049 1.45439 1.00874 1.12232 1.74963 1.18415 0.79623 0.95492 1.41854 0.92727 1.25834 0.94732 1.01650 0.99721 1.69915 1.04296 1.35124 1.50643 0.86026 0.76853 0.80632 0.79923 1.19515 1.17649 1.24308 0.87273 0.88324 0.87557 0.74445 0.90565 0.91052 0.90700 0.87966 0.91275 0.92425 0.90343 0.91699 0.90694 0.92682 0.88765 0.92827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 10.30 71.24 0.73 -0.97 16 2 C 0.51 10.40 7.90 87.66 0.69 11.09 16 3 O -0.59 -17.39 16.76 -3.04 -0.05 -17.45 16 4 N -0.71 -14.17 5.04 -446.10 -2.25 -16.42 16 5 C 0.12 2.92 2.12 44.25 0.09 3.01 16 6 H 0.10 2.64 6.18 -2.39 -0.01 2.62 16 7 C -0.15 -3.22 9.20 71.98 0.66 -2.55 16 8 C 0.52 14.29 6.95 87.66 0.61 14.90 16 9 O -0.57 -17.64 15.42 -3.05 -0.05 -17.69 16 10 N -0.59 -17.54 2.24 -813.79 -1.82 -19.36 16 11 C 0.10 3.19 4.96 86.46 0.43 3.62 16 12 C 0.11 4.00 2.85 45.47 0.13 4.13 16 13 H 0.07 2.92 3.68 -2.38 -0.01 2.91 16 14 C -0.13 -4.07 5.98 31.55 0.19 -3.88 16 15 C -0.12 -3.58 6.21 31.70 0.20 -3.39 16 16 C 0.13 4.63 4.33 45.61 0.20 4.83 16 17 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 18 C 0.11 3.62 5.88 86.55 0.51 4.13 16 19 N -0.61 -26.65 2.42 -635.92 -1.54 -28.19 16 20 C -0.23 -12.14 10.71 84.03 0.90 -11.24 16 21 H 0.06 3.25 8.06 -2.91 -0.02 3.23 16 22 C -0.02 -1.33 5.47 84.86 0.46 -0.86 16 23 N -0.95 -58.19 13.97 21.65 0.30 -57.88 16 24 Si 0.94 44.27 24.79 68.60 1.70 45.97 16 25 H -0.27 -11.86 6.39 99.48 0.64 -11.23 16 26 H -0.25 -11.29 5.99 99.48 0.60 -10.69 16 27 H -0.31 -15.41 7.11 99.48 0.71 -14.71 16 28 H 0.11 0.88 8.14 -2.38 -0.02 0.86 16 29 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.42 7.24 7.74 -92.71 -0.72 6.52 16 32 H 0.08 1.59 6.87 -2.39 -0.02 1.57 16 33 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 35 H 0.10 2.64 5.26 -2.39 -0.01 2.63 16 36 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.06 1.93 6.96 -2.39 -0.02 1.92 16 38 H 0.08 2.20 7.86 -2.39 -0.02 2.19 16 39 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 40 H 0.07 2.08 7.85 -2.39 -0.02 2.06 16 41 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.09 2.81 7.16 -2.38 -0.02 2.80 16 43 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -69.49 332.20 2.23 -67.26 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: 0.13 Total: 20.95 kcal Atomic # 6 Polarization: 17.01 SS G_CDS: 5.81 Total: 22.82 kcal Atomic # 7 Polarization: -116.55 SS G_CDS: -5.31 Total: -121.86 kcal Atomic # 8 Polarization: -35.03 SS G_CDS: -0.10 Total: -35.13 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.70 Total: 45.97 kcal Total: -69.49 2.23 -67.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691805170.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.311 kcal (2) G-P(sol) polarization free energy of solvation -69.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds